Sulfitobacter sp. SK012: C1J03_07885
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Entry
C1J03_07885 CDS
T05563
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sulz
Sulfitobacter sp. SK012
Pathway
sulz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sulz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C1J03_07885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sulz03021
]
C1J03_07885
Transcription machinery [BR:
sulz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C1J03_07885
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
Motif
Other DBs
NCBI-ProteinID:
AXI45949
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All DBs
Position
1627876..1629873
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AA seq
665 aa
AA seq
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MAAKDTNEDAKTDDQDSGHSLDMSQAAVKKMIGDAREKGYITYDQLNTVLPPDQVSSEQI
EDVMSMLSEMGINIIEDEDEDAEDEDAKGGTEVATTDNNRDLTLSASTTEKLDRTDDPVR
MYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLR
DVIDLEATFGTQMGEEEATTPVVPAFGAPTAQTKTEGGQELDADGNPITADDDDDDDDDE
QANMSLAAMEAALKPQVLEALDIIADDYVKLSEMQDSRISATLNEDGSFSAKNEKAYQKL
RSEIVLLVNELHLHNNRIDALIDQLYGINRRIMQIDSAMVKLADQARINRKEFVDEYRGY
ELDPNWMERMAGKAGRGWQMFIERSSGKVDELRSDMAQVGQYVGLDIPEFRRIVQQVQKG
EKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
TYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAAKLQ
MPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVL
ASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLR
SFLDQ
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaagacaccaacgaagacgccaaaaccgacgaccaagattccggccattcg
ctggatatgagtcaggccgcagtcaaaaagatgatcggtgatgcccgcgaaaagggctac
atcacttatgatcagctgaatactgttctgccacctgatcaggtctcgtccgaacaaatc
gaagacgtgatgtcgatgctcagcgaaatgggcatcaacatcatcgaagacgaagacgaa
gacgcagaggatgaagatgccaagggtggcaccgaggtggccacaacggataacaaccgt
gacttgaccctttcagcgagtacgacagaaaagttggaccgcacagatgaccctgtacgg
atgtatctgcgtgagatgggctcagttgaacttctgagccgcgagggcgaaatcgccatc
gccaagcgtattgaggctggccgcaacacgatgatcgcagggctgtgtgaaagcccgctg
accttccaagcgattacaatctggcgtgacgaacttctctccgaagacattttgctgcgc
gacgttatcgatctggaagccacgtttggcacccagatgggcgaagaagaggcgacgaca
cctgtcgttcctgcctttggcgctcctacggcccagacaaaaaccgagggtggccaagag
ctggacgccgatggcaatccgattactgcagatgatgatgacgacgacgatgatgacgaa
caggccaacatgtcgcttgctgcgatggaagcggccctgaaaccacaggttttggaagcg
ctcgacattattgccgatgactatgtcaagctaagcgagatgcaagacagccgcatttcc
gctacgctgaacgaagacgggtcgttttctgcaaagaatgaaaaggcttatcagaaactg
cggtcagagatcgtgctgctcgtgaacgagctacatctgcacaacaaccgtatcgacgcg
ttgattgaccaactttacggcatcaaccgccgcatcatgcaaatcgacagtgcaatggtg
aagctggcagaccaagcgcgcatcaaccgcaaggaatttgtggatgaataccgtggctat
gagcttgatccaaattggatggagcggatggcaggtaaggccggtcgcggctggcagatg
tttatcgaacgctcgtccggaaaagtcgacgagctacgctctgatatggcgcaggtcggt
cagtatgtaggtctggatatccctgagtttcgccgcatcgtgcagcaggttcagaagggc
gagaaagaagcgcgtcaggccaagaaagaaatggtcgaagcgaacttgcgtctggtgatc
tcgatagcgaaaaagtacacgaaccgcggcctgcaattccttgatcttattcaagaaggt
aacatcggcttgatgaaagccgtggacaagtttgaatatcgtcgcggctataagttctca
acttatgcgacgtggtggatccgtcaggcgatcacgcgttctattgcggatcaggcccgt
acgatccgtattccggttcatatgatcgaaacgatcaacaagctggtgcgtacaggtcgt
cagatgctgcacgaaattggccgcgagccgacgccagaagaactggccgcaaagctgcaa
atgccgcttgaaaaagtgcgcaaggtgatgaaaatcgccaaggagccgatttcgctggag
acgccgattggcgacgaagaagacagccagctgggcgacttcattgaggacaagaatgct
gtgctgcccttggacagcgcgattcaagagaacctcaaggaaaccacgacgcgcgttctg
gcaagccttacaccgcgcgaagagcgtgtattgcggatgcgctttggtatcgggatgaac
acggatcacacgctggaagaagttggccagcagtttagcgttacacgcgaacgtatccgt
caaatcgaagcaaaggcgctgcgcaagctcaagcatccatcgcgtagccgcaagttacgg
tctttcctggaccagtaa
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