Candidatus Karelsulcia muelleri CARI: SMCARI_011
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Entry
SMCARI_011 CDS
T01303
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sum
Candidatus Karelsulcia muelleri CARI
Pathway
sum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMCARI_011 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sum03021
]
SMCARI_011 (rho)
03019 Messenger RNA biogenesis [BR:
sum03019
]
SMCARI_011 (rho)
Transcription machinery [BR:
sum03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SMCARI_011 (rho)
Messenger RNA biogenesis [BR:
sum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SMCARI_011 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA
AAA_25
AAA_22
NACHT
ATPase_2
AAA_24
AAA_14
Mor
Motif
Other DBs
NCBI-ProteinID:
ADM89847
UniProt:
E0TJ70
LinkDB
All DBs
Position
complement(16019..17089)
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AA seq
356 aa
AA seq
DB search
MPENYGFLRFSYFNYLSSSDDIYVSPSQIRLFKLKTGDTIIGEVRPTKKGEKYFTLIRIF
KVNGRFPSYLKFRKSFEDLTPLFPNKKFKISGKKKTLSTRIIDLFAPIGKGQRGIIVAPP
KTGKTTLLKEIANTIAYNHPEVYLLILLIDERPEEVTDMQRNVNGEVVSSTFDEPAEKHV
KVANIVLQKAKRMVECGHDVVILLDSITRLARAYNTVSPTSGKVLSGGVDSNALHKPKRF
FGAARNLEDGGSLSIIATAIIETGSKMDEVIFEEFKGTGNMELQLDRKIANKRIYPAIDL
IASSTRKEELLLNKNTLNQIFLLRKRFSDMTPVEAMEYIKFRIINTKNKKEFFINL
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaattatggatttttaagattttcttattttaattatttatcatcatctgat
gatatttacgtatcaccatctcaaataagactttttaaattgaaaactggtgatactatc
ataggagaagttcgtcctacgaaaaaaggagaaaaatattttactttaataagaattttt
aaagtaaatggacgtttcccttcttatttaaaatttagaaagtcttttgaagatttaact
ccattatttcctaataaaaaatttaaaatttcaggtaaaaaaaaaactctttctacaaga
attatagatttatttgctcctataggaaaaggacaaagaggaattatagtagcacctcct
aaaactggaaaaacaactttattaaaagaaatagcaaatacaatagcttataatcatcca
gaagtatacttattaatacttttaatagatgaaagaccagaagaagttacagatatgcaa
agaaacgtaaatggggaagtagtatcatcaacttttgatgaaccagcagaaaaacatgta
aaagttgctaatattgttttacaaaaagcaaaaagaatggttgaatgtgggcatgatgta
gtaatattattagattctataacacgtttagctagagcatataatacggtttctcctaca
tctggaaaagttttatcaggaggagttgattctaacgcattacataaacctaaaagattt
tttggggcagctagaaatcttgaagatggtgggtctctctctataattgctacagcaatt
atagaaactggatcaaaaatggatgaagtaatatttgaagaatttaaaggaacagggaat
atggaactccaattagatagaaaaattgctaataaaagaatatatccagctatagactta
attgcttctagtacaagaaaagaggaattattattaaataaaaatacattaaaccaaatt
tttcttttaagaaaacgtttttctgatatgactcctgtagaagctatggaatatataaaa
tttcgtataattaatacaaaaaataaaaaagaattttttattaatttataa
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