Candidatus Karelsulcia muelleri CARI: SMCARI_068
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Entry
SMCARI_068 CDS
T01303
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sum
Candidatus Karelsulcia muelleri CARI
Pathway
sum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMCARI_068 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sum03021
]
SMCARI_068 (rpoC)
03400 DNA repair and recombination proteins [BR:
sum03400
]
SMCARI_068 (rpoC)
Enzymes [BR:
sum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMCARI_068 (rpoC)
Transcription machinery [BR:
sum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMCARI_068 (rpoC)
DNA repair and recombination proteins [BR:
sum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMCARI_068 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
ADM89897
UniProt:
E0TJC0
LinkDB
All DBs
Position
complement(70621..74844)
Genome browser
AA seq
1407 aa
AA seq
DB search
MNYEIIDNSFKKVTISFSSSEDILKDSYGEVLKPETINYRTHRPELDGLFCERIFGPTKD
FECVCGKYKKKRYKGLICDRCGVEIIEKQVRRYRIGHINLIVPIVHIWGFRSLPNKIGYV
LGLSSKKLDMIIYYERYVVIQPGIAQDYKNLYIKKFSLLTEEEYIFILNYLPKENQYLSN
NDPNKFIAKMGAECLKELLKNVDLKLLSDSLKNQANKETSKQRRFESFKRLNVVESFKEG
EKKGGKMTNLIFKVIPVIPPELRPLVPLDGGRFASSDLNDFYRRILIRNNRLKRLIEIKA
PEIILRNEKRMLQESVDSLFDNSRKITAIKSESNRPLKSLSDSLKGKQGRFRQNLLGKRV
DYSARSVIVVGPKLKLNECGLPKYIAAEIYKPFIIKILIERGIVKTVKSAKRLIDKKYPM
IWDILENLVKGHPVLLNRAPTLHRLGIQSFQPKLIEGKAIELHPLVCSAFNADFDGDQMA
VHLPLSTEAILEAKLLMLASQNILNPANGDPITVPSQDMVLGLYYMTKELKSTTEKKMKG
EGMCFSSLEEVEIAYNNKILDIHAIIKVKVKILQNNELISKIIETTVGRVLFNIVVPKQV
GYINELLTKKSLRDIISKILNKTNIPTTAKFLDEIKELGFYNAFKGGLSFNINDLKIPKE
KKNLIKKAMEKVYLVKSHYNMGLITNNERYNKIIDIWTNTNAKLTEKVINYMQISKQGFN
SIYMMLDSGARSSKEQIRQLSGMRGLMAKPQKTSLIGSEIIENPILSNFLEGLSILEYFI
STHGARKGLADTALKTADAGYLTRRLVDSAQDIIIKENDCKSSLGIRISALKKNEEIIEP
LSYRILGRIVLKNVYNPINNKLLIKSSEIIDKKNIKLITEASIDSIEVRSPITCKSKTGI
CIKCYGKNLANGFIVQKGEAIGVIAAQSIGEPGTQLTLRTFHVGGTAGNIYKSSKIKAKY
DGIIKYKDIKVVKTNFEKIVVSRSSEIFLLNKNGVVLMKKNIPYGSKLFVSNKQFLKKDE
IICSWDPYNAVIIAELSGIIKYENLEKGLTFKVQIDEQTGFQEKIILEVKNIIPTLKIVN
KKNKVLKTYNLPIGGHLIVNDGDEINEGTILIKTPRKYFQSGDITGGLPRLSELFEARNP
SNSAIISEIDGIVSFGKLKRGNKEIIIKSKRGKKKKYLIRRSKQIIVQENDFIKAGMPLS
DGDISLYDILNIKGLKAAQKYLINEIQKVYRLQGVKINDKHFEIIVRQMMQKVKIIKSGD
SKFLEGNIELKKTFIEENKKILEMKVIEESGDSKKFVKGDLISIKDIRKENNFLNFSNKK
QLKFRNTNIAISKPIIQGITKAALQTKSFISAASFQETTKVLTEAALKKKTDYLNGLKEN
VIVGNKIPAGTGFTKFKKIYMIDDLNY
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaattatgaaataatagataattcttttaaaaaagtaactattagtttttcttcctct
gaagatattttaaaagattcatatggagaagtattaaaaccagaaactataaattatcgt
actcatagacctgaattagatggtcttttttgtgaacgtatttttggacctacaaaagat
tttgaatgtgtttgtgggaaatataaaaaaaaacgttataaaggattaatctgcgataga
tgtggcgtagaaataatagaaaaacaagttcgtcgttacagaattggccatattaattta
atagtccctatagtccatatatggggatttagatctcttccaaataaaataggatatgtt
ttaggtttatcatctaaaaaacttgatatgatcatttattatgaacgttatgtagtaatt
caaccaggaattgcacaagattataaaaatttatatataaaaaaattcagtttattaact
gaagaagaatatatctttatattaaattatcttccaaaagaaaatcaatatttatctaat
aatgatcccaataaatttattgctaaaatgggagctgaatgtttaaaagaattattaaaa
aatgttgatttaaaactgttatcagattctttaaaaaatcaagccaataaggaaacatct
aaacaaagaagatttgaatctttcaaaagattaaatgtagtagaaagttttaaagaagga
gaaaaaaaaggaggtaaaatgacaaatcttatttttaaagttattcctgtaattcctcca
gaattacgtcctttagtccctttagatggagggaggtttgcttcttctgatttaaatgat
ttttatagaagaattttaattcgtaataatagattaaaaagattaatagagattaaagct
cctgaaatcatattacgtaatgaaaaaagaatgttacaagaatctgtagattcacttttt
gataattctagaaaaattacagcaataaaatcagaatctaatagaccattaaaatcttta
tctgattcattaaaaggaaaacaaggtcgttttagacaaaatcttttaggtaaaagagta
gattattcagcaagatcagtaatagtagtaggtccaaaattaaaattaaatgaatgtgga
ttacctaaatatatagcagctgaaatttataaaccttttataattaaaattctgattgaa
agaggtattgtaaaaacagtaaaatcagctaaaagacttatagacaaaaaatatccaatg
atatgggatattttagaaaatcttgtaaaaggtcatcctgttttattaaatagagcaccg
acacttcatagattaggaattcaatcatttcaacctaaacttattgaaggaaaagcaata
gaattacatccattagtttgttcggcatttaatgcagattttgatggagatcaaatggca
gtacatcttccattatcaactgaagcaattttagaagcgaaattattaatgttagcatca
caaaatattttaaatcctgctaatggagatcctattacagtaccatcacaagatatggta
ttagggttatattatatgactaaagaattaaaatctactactgaaaaaaaaatgaaagga
gagggtatgtgtttttcttctcttgaagaagtggaaatagcttataataataagatttta
gatattcatgcaataattaaagttaaagtaaaaattttacaaaacaatgaattaatatca
aaaattatagaaactacagtaggtcgagttttatttaatatagttgttccaaaacaagta
ggatatataaatgaattattaacaaaaaaatctttaagagatataatttctaagatatta
aataaaaccaatatacctactacagcaaaatttttagatgaaataaaagaattaggattt
tataatgcatttaaaggaggtttatcttttaatataaatgatctaaaaattccaaaagaa
aaaaaaaatcttattaaaaaagctatggaaaaagtttatttggttaaatcccattataat
atgggattaataactaataatgaacgttataataaaataattgatatatggactaatact
aatgctaagttaacagaaaaagtaattaattatatgcaaattagtaaacaaggatttaat
tcaatctatatgatgctagattctggagctagaagttcaaaagaacaaatacgtcaatta
tctggaatgagaggattaatggcaaaacctcaaaaaacaagtttaataggttcagaaatt
atagaaaatccaattttatctaattttttagaaggattatctatattagaatattttata
tctacacatggagcaagaaaaggattagctgatactgctttaaaaacagcagatgctgga
tatttaacaagacgtttagtggattcagcacaagatataattataaaagaaaatgattgt
aaatcctctttaggaataagaatatctgcattaaaaaaaaatgaagaaataatagaacca
ttatcatatagaattttaggtcggatagttttaaaaaatgtttataatcctattaataat
aaattattgataaaatcatctgaaataatagataaaaaaaatataaaattgataacagaa
gcttcaatagatagtattgaagttagatctcctattacatgtaagtctaaaacaggaatt
tgtataaaatgttatggaaaaaatcttgctaacggttttattgttcaaaaaggagaagcc
ataggagtaatagccgcacaatcaattggtgaaccaggtacacaacttacacttcgaact
tttcatgttggaggaacagctgggaatatatataaatcttcaaaaataaaagctaaatat
gatggaatcatcaaatataaagatattaaagtagtaaaaactaattttgaaaaaatagtt
gtttctagatcatctgaaatctttttattaaataaaaatggagtagttttaatgaaaaaa
aatattccatatggatctaaattatttgtttctaataaacaatttttaaaaaaagatgaa
attatctgtagttgggatccatataatgctgttattatagcagaattatcaggaataata
aaatatgaaaatcttgaaaaaggacttacttttaaagttcaaatagacgaacaaactggt
tttcaagaaaaaattattttggaagtaaaaaatataatacctactttaaaaatagtaaat
aaaaaaaataaagtattaaaaacttataatttacctatagggggacatttaatagtaaat
gatggagacgagataaatgaaggaactattttaataaaaacacctagaaaatattttcaa
tcaggagatataacagggggattaccacgtttatccgaattatttgaagcaagaaatcct
tcaaattctgcaataatatctgaaatagatggaatagttagttttggtaaattaaaaaga
ggaaataaagaaataattataaaatctaaaagaggaaaaaaaaagaaatatttaataaga
agatcaaaacaaattattgtacaagaaaatgattttataaaagcaggaatgcctttatca
gatggagatatatcactatatgatattttaaatatcaaaggattaaaagctgctcaaaaa
tatttaattaatgaaatacaaaaagtatatcgtttacaaggagtaaaaattaatgataaa
cattttgaaattatagtaagacaaatgatgcaaaaagtaaaaattataaaatcaggagat
tctaagtttttagaaggaaatattgagttgaaaaaaacttttatagaagaaaataaaaaa
attttagaaatgaaagttatagaagaatcaggtgattctaaaaaatttgtgaaaggagat
ttaatttctattaaagatattagaaaagaaaataattttttaaatttttcaaataaaaaa
cagttaaaatttagaaatacaaatatagctatatctaaaccaataattcaaggtataact
aaagcggctttacaaactaaatcttttatttctgctgcttcttttcaagaaactacaaaa
gttttaacagaggctgctctaaaaaagaaaactgattatttaaatggattaaaagaaaat
gttatagtagggaataaaattcctgcaggaactggattcacaaaatttaaaaaaatttat
atgattgatgatctaaattattaa
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