Sulfurovum sp. NBC37-1: SUN_1297
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Entry
SUN_1297 CDS
T00572
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sun
Sulfurovum sp. NBC37-1
Pathway
sun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SUN_1297 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sun03019
]
SUN_1297 (rhlE)
Enzymes [BR:
sun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SUN_1297 (rhlE)
Messenger RNA biogenesis [BR:
sun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SUN_1297 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
HI1480
P-loop_SecA
AAA_25
Flavi_DEAD
Cas3-like_C_2
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
BAF72250
UniProt:
A6Q9U1
LinkDB
All DBs
Position
complement(1332247..1333620)
Genome browser
AA seq
457 aa
AA seq
DB search
MSFTNLGLNESLLKAIKDQGYTSPTPIQKQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLL
ERLSETHPKMGKKQIRVLVLTPTRELAAQVAESIKTYGKYMKYTSTVVYGGVGINPQLAT
IRRGVDIVIATPGRLLDIAGQQGIDFSALETLVLDEADRMLDMGFIHDIKKLMKMMPKER
QTLLFSATFSLEIKKLASGLLKNPVLVEVARENTTADQISQVVHFVDKSRKRELLSQLIK
TKDWRQVLVFTRTKHGANRLTKQLEEAGISAAAIHGNKSQGARTKALASFKANEIRVLVA
TDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGQSGEAVSLVCVDEHKLLFDIE
KFIKSEIKKVHIEAFTPDPNIKAEPIQNGRGGGQKRGGGNSRNRSRNTNTSNREHKESSA
KKANTKNSAAAKIGNNIQEKLDKLEKRDMNPNRQRRR
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttacaaacctgggattaaacgaatcccttctcaaagcaataaaagatcagggg
tacacctctccaacacccattcagaagcaggcaatacctgtagtcatagaaggcaaggat
gtccttgccgcggcgcagaccggtacgggaaaaaccgcaggttttaccctgcctctgctt
gagagactttcagaaacccacccgaaaatgggtaaaaaacagatacgtgtcctggtactg
acaccaacacgtgaacttgccgcacaggttgccgagagcatcaagacctacggcaaatat
atgaagtacacttctacagtcgtttacggcggtgtgggtattaacccgcagctggcgacc
atccgaaggggtgtcgacattgttattgcaacaccgggaaggcttctggacattgcaggt
cagcagggcatagatttctctgcgttggagacacttgtcctcgacgaagcagacagaatg
cttgatatgggcttcattcatgacattaaaaaactgatgaagatgatgccaaaggaaaga
caaacactgctcttctccgcaacattctctctcgagattaaaaagctggcttcaggactt
ttaaaaaatcctgtgctcgtagaagtggcgagagagaacactaccgcagaccagatcagc
caggtcgtccactttgtggataaatcacgaaaaagagagctgctttcgcaactcatcaaa
acaaaggactggagacaggttctcgtctttacgcgtaccaaacatggtgcgaacaggctg
acgaaacagcttgaagaagcaggcatctccgctgcggccattcatggtaacaaaagccag
ggtgcaagaacaaaagcacttgcctccttcaaggccaatgagatccgtgtgctggtagca
acggatattgccgcaagagggatcgacatagaccagctgccgcacgtggtcaattatgag
ctgccgaatgtacctgaagattatgtgcaccgcatcgggcgtaccgggcgggcagggcag
agtggtgaagctgtttctctggtctgtgtagatgaacacaagctgcttttcgacatagag
aagttcataaaatcagagatcaaaaaagtacatatagaggctttcacgccggacccaaat
atcaaagcggaacccattcagaacggaagaggcggcggacagaaacgtggaggcggtaat
agccgtaacagatcgaggaatacaaatacatccaacagagaacataaagagagttccgcc
aaaaaagcaaacacaaaaaacagtgctgcggccaagataggtaacaacattcaggaaaaa
ctggacaaactcgaaaagagggatatgaatccgaacaggcaaagaagaagataa
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