Sulfurovum sp. NBC37-1: SUN_2041
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Entry
SUN_2041 CDS
T00572
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sun
Sulfurovum sp. NBC37-1
Pathway
sun03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SUN_2041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sun03400
]
SUN_2041
Enzymes [BR:
sun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SUN_2041
DNA repair and recombination proteins [BR:
sun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SUN_2041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
BAF72982
UniProt:
A6QBX3
LinkDB
All DBs
Position
complement(2119326..2122310)
Genome browser
AA seq
994 aa
AA seq
DB search
MVYQSNIYEYLENVKEEKLLLCKDDKEALQIRDVAQLLGFDTFVLPDIRVNMGEDLRAYV
EDLQLFFAQLSAYHASDRKKILISPVRTVLLPFPKPEFFRNKVLEFGDTVDLNELKDTLY
QWGYHFTDIAASRGEVSFRGDIIDIFPIDAEKPYRISLFDDEIESIQHYDEATQKRFEEE
LDSVEFTPAFLALDKKQYEALRKRVERSRYDTFVKDIDSLGLWHLEDLGQSALEQFPAVW
ASNLDEELKEIYELGEPLVPRKEFLLPAIPEGSRYRDLEVVDPNKLLEAHKDKKITVIAR
NESIVRGSELSTFENIEFVYQDGIVNIMGDDRLILSLNKPLKKKRVKKATIILDELKPGD
YVVHENHGVGIFKGIEKRDVLGATSEFVVIFYQNEDSLLIPVSSLEVIDRYVAEGGALPV
LDRLGKASFKKLKGKVREKLFAIASQIINLSAQRHLKKGIRMKIDREEHTLFMSKAGFLH
TEDQERAINDMLDDMSSGRMMDRLLSADVGFGKTEVAMNGMFVAVRNGYQAMMIAPTTLL
SSQHYKSLKERFYDYGFKVAKLDRFSTTKEKNAILKGLAEGTIDVVVGTHALLKAKFKNL
ALVIIDEEHKFGVKQKEALKEMSIDVHLLSMSATPIPRSLNMALSEVKSFSEILTPPTER
QGVRTFVKSYDDKVIKEAILREMRRGGQIFYVFNSIAGIDEKKKQLLEILPKLRVAVLHS
KISAKETEDEMLKFEDGEYDVLLSTSIVESGIHMPHANTMIVEGADNFGIADLHQLRGRV
GRGGREGYCYFMVTDKDRLTENAKKRLIALESHSDLGSGAVLAFHDLEIRGGGNIIGEAQ
SGHIKQIGYSLYLRMLEDAIKELSGQDKEVAHNIDMKLSIDAYLNEELIEEDRLRLELYR
RLSLCETTGEVYEIEAEIADRFGKPDTITRQFIDVMVMKVLAKQQEISKVSSYGENVFIE
FREEGKERVVLKSNSKDDDDIIAAAMGYLKGNNI
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggtgtatcaaagtaatatctatgaatatttggagaacgtaaaagaagaaaagcttctt
ttgtgcaaagacgataaggaagccttgcaaataagagatgtagcacaactgctagggttc
gatacctttgttctacccgatatcagggtcaatatgggtgaagaccttcgtgcctatgtg
gaggaccttcagctcttttttgcacagctttccgcctatcatgcttccgacagaaaaaag
attctcatctcgccagtccggactgtactgctgccatttccaaaacctgaatttttcagg
aataaagtcctggaattcggcgacacggtcgacctgaatgaactgaaagatactctgtat
cagtggggataccactttacagatattgctgcaagcagaggtgaggtttcttttcggggg
gacatcatcgatatctttcccatcgatgctgaaaaaccctaccgtatttccctttttgat
gatgaaatagagtcaatacagcattatgacgaagcgacacagaagcgtttcgaagaggag
ttggacagtgtagaatttacgccggctttccttgcgcttgacaagaagcagtatgaggcc
cttagaaaaagagtagagcgaagccgttatgatactttcgtcaaagatatagattctctt
ggattgtggcatcttgaagatctcggtcaaagtgcactcgaacagttccctgccgtttgg
gcaagcaatctggatgaggaacttaaagagatctacgaactgggtgaaccgctggtacca
agaaaggaattcctgctccctgccattcccgaaggcagccgctaccgtgaccttgaagtc
gtcgatcctaacaaactgcttgaggcccacaaagacaaaaagatcaccgtcatcgcccgt
aacgagagtatcgtccgaggctctgagctgagcacttttgagaatatcgagtttgtctac
caggacggtattgtcaatatcatgggggatgacaggctcatcctctccctgaacaaaccg
ctcaagaagaaacgggtcaagaaagcgacgatcatccttgatgaactcaagcccggtgac
tatgtggtacatgagaaccacggtgtgggtatcttcaaagggatagaaaagcgtgatgtt
cttggggcgaccagtgaatttgtggtgatcttttatcagaacgaggattctctgctcatc
ccggtctcctctcttgaagtgatcgaccgctatgtggcagagggcggggctctgcctgtt
ctggacaggctcggcaaggcaagttttaaaaagctcaaaggcaaggtcagggagaaactt
tttgccatcgcttcccagatcatcaatctctctgcccagaggcacctgaaaaaaggtatc
aggatgaagatcgacagagaggagcatacgcttttcatgtccaaagccgggttcctgcat
accgaagatcaggaaagggcgatcaacgatatgctcgatgatatgagttcgggccggatg
atggaccgtctgctctctgccgatgtgggctttggaaagaccgaagtggcgatgaacggg
atgttcgttgccgtcaggaacggttatcaggccatgatgatcgcaccgaccacactgctg
agttcccaacactacaaaagcctcaaggaacgtttttacgattacggcttcaaagtggcc
aaactggaccgtttttctacgaccaaagagaaaaatgccatcctgaagggactggcggaa
gggactatcgatgtggtagtgggtacccatgcactactcaaggcaaagttcaagaacctt
gctctggtaatcatagacgaagagcacaagttcggtgtaaaacagaaagaggcactcaaa
gagatgagtatcgatgtgcatctgctctcgatgtctgccacacctataccgcgctcgttg
aacatggcgctttcagaggtcaagagcttttctgaaatacttacacctccgacagaacgc
cagggcgtccgtacttttgtgaagagttatgacgacaaagtgatcaaagaggccattctg
agggagatgcggcgcggtgggcagatcttctatgtcttcaactccattgccgggatagac
gagaaaaagaaacagttgcttgaaattctgcctaagcttcgtgttgccgtactgcactca
aagatctccgccaaagagacggaagatgagatgctgaagttcgaggatggagagtatgat
gtactgctctccacctccatcgtcgagtcaggcatccatatgccacatgccaacacgatg
atcgtcgaaggggcggacaatttcggtatcgccgacctgcatcagctcagaggccgtgtc
ggacggggcggaagggaagggtactgctacttcatggtaacggacaaggacagattgacc
gagaatgccaaaaagcgcctcattgcgctggaatcgcactccgatctcggttcgggtgcc
gtgctggctttccatgacctcgagattcgtggtggtggtaacattatcggggaagcacag
agcggacacatcaagcagatcggttattcgctctacctgcgtatgcttgaagatgccatc
aaagaattgagcggacaggacaaagaggtggcgcacaatatcgatatgaaactttcgatt
gatgcctacctgaacgaagagctcatcgaggaggacaggctgcgtttggagctctatcgg
agactttcgctttgcgaaacgacgggagaagtttatgagatagaagccgagatcgcagac
agatttggtaaaccggatactattacaagacagttcatcgatgtcatggtgatgaaggta
ctggcaaaacagcaagaaatctccaaagtttcttcttatggtgaaaatgtgttcatcgaa
ttcagagaagaggggaaagaacgtgtggtgttgaaatcaaactcaaaagacgatgatgat
atcattgctgcagcgatggggtatctaaagggaaataatatttag
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