Sceloporus undulatus (fence lizard): 121914245
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Entry
121914245 CDS
T07740
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121914245 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sund03041
]
121914245 (DHX38)
Enzymes [BR:
sund01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121914245 (DHX38)
Spliceosome [BR:
sund03041
]
Complex C
Other components
Step II factors
121914245 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
Flavi_DEAD
PhoH
AAA_16
AAA_30
SRP54
AAA_7
Motif
Other DBs
NCBI-GeneID:
121914245
NCBI-ProteinID:
XP_042293438
LinkDB
All DBs
Position
8:complement(23072783..23089912)
Genome browser
AA seq
1329 aa
AA seq
DB search
MARAGLAALLRVFVGQEAEQGGKGKGRGRAAAPTALPCLPGPVCPGKSWGRPQRGGTSEP
SRKEPEPEPEPEPEPASSASLHRLSGLSPESQRGGLVVRKRSATEEQHVFKIPAPRTSLL
GLDLLAAQKRREREERAEAAGGEAERKRPRIASSSSPKDWAEEAAARDDADVAGGEEGDA
DPANAASGRSGRKDRHYRSARAETPSHTGGVSEEFWERSRQRERERREQGVYASSKEEKE
RKRDHDRKRDHREERDRSRRSSGGGGRSERESSSSERGSSSSSSSRKSEPESPRHRPKDA
ATPSRSGWEEEDSAYSSSRRSQWESPSPAPSYRDSERSQRGSASRESDRRDRDRSLRSRY
PEETPLPTPSYKYNEWADNQRHSGATPWLSRGRGKREDGEDGIAFETEEERQQWEEDQRQ
ADRDWYMMDEGYDEFHNPLASSSEEYVRKREQHLQKQRQKRISAQRRQINEDNERWETNR
MLTSGVVHRLEVDEDFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLA
IIARKGSQLVRKHREQKERKKAQHKHWELAGTKLGNIMGIKKEEEEEGAKQILAEDGSVD
YRTEQKFADHMKEKSEASSEFAKKKSIVEQRQYLPIFAVQQDLLTVIRDNSIVIVVGETG
SGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMAVSLGEEVGYAIRFEDC
TSENTVIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDL
KLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDVLFSKTPQEDYVEAAVKQALQVHLSS
APGDILIFMPGQEDIEVTSEQIVEHLEELENAPALAVLPIYSQLPSDLQAKIFQKAPDGV
RKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAG
RTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPED
NMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSML
SVPAIFYRPKGREEESDQVREKFAVPESDHLTYLNVYLQWKSNSYSTLWCSEHFIHAKAM
RKVREVRAQLKDIMVQQRMSLASCGTDWDVVRKCICAAYFHQAARLKGIGEYVNIRTGMP
CHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSR
QESRRRAKEEASAMEEEMALAEEQLRARREEQERRNPVGSIRSAKIYTPGRKEQGQPATP
RHTPARFGL
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagctggcctggctgccctgctccgggtctttgtggggcaagaggccgagcag
ggaggcaagggcaagggcaggggcagggctgcagccccgaccgcccttccctgcctccct
ggccctgtttgcccagggaaatcctgggggcggccacaaaggggggggacatctgagccg
agcaggaaggagccggagccggagccggagccggagccggagccggcctcctccgcgtcg
ctgcaccgcctttcgggcctgtctccggagtcgcagcggggagggctggtggtgcggaag
cggagcgccaccgaggagcagcacgtcttcaagatcccggcgccgaggacctcgctgctc
ggcctcgacctcctggccgcccagaagcgccgcgagcgagaggagcgggccgaggctgcc
ggcggagaggcggagcggaagaggccccgcatcgcctcctcctcctccccgaaggactgg
gccgaggaggcggctgcaagggacgacgcggacgtcgccggcggagaggaaggggacgca
gaccccgctaatgccgcctccgggcgcagcgggcgcaaggaccggcactaccgctctgcg
cgcgcggagacgccgtcacacaccggcggagtcagcgaggagttctgggagcgcagccgg
cagcgggagcgggagcggcgggagcaaggggtctacgcttcctccaaggaggagaaggag
cgcaagagggaccacgaccgcaagcgcgaccaccgagaagaacgggaccgaagtcggcgc
agcagcggagggggcggccgctctgagagggagtcctcctcctcagagaggggcagcagc
agcagcagcagcagccggaagagcgagccggaaagccctcgccaccgacccaaagatgcg
gctactccttcgcgctcaggctgggaagaagaggacagcgcctacagctcttcgcgtcgc
tcgcaatgggagtccccttcccctgccccctcctaccgggactccgagcgcagtcagcga
gggtctgcttcccgtgagagcgacaggcgggaccgcgaccggtccctgaggagccgttac
ccagaggagacgccgttgccaaccccttcctacaagtacaacgaatgggcagacaaccag
cgtcactcaggcgccaccccttggctctctagaggcagagggaagcgcgaagatggggaa
gatggcatcgcctttgaaacggaggaggagcggcagcagtgggaggaggaccagcggcaa
gcggacagggactggtacatgatggacgaaggctatgatgagttccacaaccccctggcc
tcctcctcagaggagtacgtacgcaaacgggaacagcacctgcagaagcagaggcagaag
cgcatctctgctcagcgcaggcaaatcaatgaggacaatgagcgctgggagacgaaccgc
atgctgaccagtggtgtggtgcaccggctggaggtggatgaggactttgaagaggataac
gccgccaaggttcacctcttggtccacaacctggtgccacccttcctggatgggcgcatt
gttttcaccaaacagccggagcccgtgatccctgtcaaggatgccacttcggacctggca
atcatcgcccgcaaggggagccagctggtgcggaagcaccgggagcagaaggaacgcaag
aaggcccagcacaagcactgggagctggcaggcaccaaactgggcaacatcatgggcatc
aaaaaggaggaagaggaagagggggccaagcagatcctggctgaggatggcagtgtggat
tacaggacagaacaaaagtttgctgaccacatgaaagagaagagtgaagccagcagtgag
tttgccaagaagaagtcaattgtggagcagaggcagtacctgcccatctttgctgtacaa
caggacctgctgacggtcattcgagacaacagcattgtgattgttgtgggagagaccggc
agtggcaaaacgacacagctgacacagtatcttcatgaggacgggtacacggattacggc
atgattggctgcacacagccccgtcgggtggcagccatgtcggtggccaagcgtgtcagt
gaagagatggctgtgagcctgggggaggaggtggggtatgccatccgctttgaggactgc
acctctgagaacacggtcatcaagtacatgacagatggaatcctgctgcgggagtctttg
cgtgaggcagaccttgatcactacagtgccatcatcatggacgaggctcatgagcgctcg
ctcaacaccgacgtgctgtttggcctcctgcgtgaagtggtggctcggcgctctgacctg
aaactgattgtgacctcagccaccatggatgcagagaaatttgctgctttctttgggaac
gtgcccatttttcacatcccgggccgcaccttcccagtggatgtcctctttagcaagacc
ccgcaggaggattacgtggaggcagcagtgaagcaggccctgcaagtgcacctctccagc
gcccctggagacatcctcatcttcatgccgggccaggaggacattgaggtcacctcagag
cagattgtggagcacctggaggagctggagaacgcccccgccctggctgtgctgcccatc
tattcccaactgccttcggatctgcaggccaagatcttccagaaggcaccagacggagtc
cggaagtgcatcgtggccaccaatattgcagagacttccctgacagtagatgggatcatg
tttgtgatcgactctggctactgcaagctgaaggtcttcaacccacggattggcatggat
gccctgcagatctaccccatcagccaggccaatgccaaccagcgctcaggcagggctgga
aggacgggaccaggtcagtgtttcaggctctacactcagagcgcctacaagaatgagctg
ctgaccaccactgtcccggagattcagcgcaccaacctggccaatgtggtgctgctgctg
aagtctctgggagtccaggacctgctccagttccacttcatggacccgcctccagaggac
aatatgctcaactccatgtaccagttgtggatcctaggggccttggacaacacaggtggg
ctgacctccacgggtcgcctgatggtggagtttcccctggacccggctctctccaagatg
ctgatcgtttcctgcgacatgggctgcagttccgagatcctgctcattgtttccatgctc
tctgtgccagccattttctaccggccgaagggccgggaggaagagagcgaccaggtgcgg
gagaagtttgctgtcccagagagtgaccatctgacctacctgaacgtgtatctgcagtgg
aagagcaacagctactccaccctctggtgcagtgagcacttcatccatgcaaaggctatg
cgcaaagtgcgggaggtacgagcgcagctgaaggacatcatggtgcagcagcgcatgagc
ctggcctcctgcggcactgactgggatgtcgttcgcaagtgcatctgcgctgcttacttc
caccaggctgccagactaaagggcattggggaatatgtcaacattcgcacggggatgccc
tgccacctgcaccccaccagctcactttttggcatgggctacactccagactacattgtt
taccatgagctcgtaatgaccaccaaggagtatatgcagtgtgtcactgctgtggatggt
gaatggctggccgaattggggcccatgttctacagcatcaaacacgccggcaagtctcgc
caggagagtcgcaggcgggccaaggaggaagcatctgccatggaggaggagatggcactg
gcagaggagcagctccgtgcccgcagggaagagcaagagcgacgcaaccctgtgggcagc
atcaggtccgccaagatctacacgccagggcggaaggaacaagggcagcctgccacccca
cgccacacgccggctcgctttggtctgtag
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integrated database retrieval system
