Sceloporus undulatus (fence lizard): 121914545
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Entry
121914545 CDS
T07740
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121914545 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sund03019
]
121914545 (EDC4)
Messenger RNA biogenesis [BR:
sund03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121914545 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
121914545 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EDC4L
Beta-prop_HPS5
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
CelTOS
Motif
Other DBs
NCBI-GeneID:
121914545
NCBI-ProteinID:
XP_042293975
LinkDB
All DBs
Position
8:complement(9070194..9100177)
Genome browser
AA seq
1402 aa
AA seq
DB search
MASASIDIEDATQHLRDILKLDRPSGSVNENQRSSSSYNGDLNGLLVPDPIATGDGVSLT
KPVPQTVPLGALQEKQVICLSGDDSSTCMVITAKDVEIVASSDSSITSKARGSNKVKIQP
VARYDWEQKYYYGNLIAVSNDYLAYAIRGASNGSAMVRVLSVSTAERTLLKGFTGGVADL
AFAHLNSNQLACLDEAGNLFVWRLAMENGRIQEEILVNIKRPDGTPRNSFRRIIWCPFIP
DENEDSCEEGSQTVALLHEDRAEVWDLDIIRANHSSWPVEVTNIKEGFIVVKGHSTRLSE
GALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQDP
EVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSMSVLPSLKACLDLSAEYLI
LSDVQRKVLYVMELVQNQEEGKAFFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPAEE
ESDGLSAEGTQGTGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDTAAPIPSHGSHE
DFAFPDHLADLGTEGLGSEKGSMHGSQPDLRRISELSVPVDFLSPSNDTKLKLMTPDAFM
TPSTSLQQITGSPGSSISSLTAVTTMSSSSVSEPPIPRPAEEVSPSSKMQLDGSLGLSSS
SGSLQTSPRSHSVLLSGLPDRLTPKVPISISPENPTHVLERQEVEPLVVPQSSPTRERSP
DVISSASTAMSQDIPEIASETLQRSFGAAPSGLPTEVLDSNHHTDSMASAASALHLLSPR
NRHGSEHSHHSLDMAPNEVDMLTAPSLLETALPQETATSDTNVSQPWPAAPDITRETRNS
MADSPRNEVEEKHKSSYHRHSYHMLQHDSQDASAEQSDHDDEVASLASTSGGFSAKAAAQ
RLPVKDWKAKVSPRASPKLKRKGKKDDDSRDVSQSPRSFDQQVAPEYQDELMSLLRTQQR
EIAELRQNQMELMQRLSDHLDTVQSSLMGHIERVAESQQEQEQRRLEQALAEGQQRSGQL
QEHLSQQLSQSLSTAACSRLERTIREEMKKTVPPCISKTLDPITGQLSNTIANKLTAVEG
TLKENVTKLVKSKNLTDAIARAAADTLQGPMQSAYREAFQNVVLPAFEKSCQSMFQQIND
TFKQGTQEYIQQLETHMKNKKARDQDARDSQLNQLRQLVTTFQSTTDQMASTIATSVHTE
VQHQLHVVVGNMQESILAQVQRVIKGEVSMAMKEQQAAVTSSIMQAMRSAAGTPIPATHL
DFQSQQAHVLQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPQQVFGQHPCPLSQPVLL
SLIQQLSSDLGARTELKLNYLEEAVMHLDHSDPITRDHMGSVMNQVRQKLFQFLQAEPHN
SLSKPARRLMIMLQGLVTPSMS
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgccagcatcgacatcgaggacgccacgcagcacctgcgggacatcctcaag
ctggaccggccttcgggttctgtgaatgaaaaccaaagatcatctagttcgtacaatgga
gatctaaatggtttgttggtgccagatcccattgcaactggagatggagtttccttaacc
aagcctgttcctcaaacagttcccctgggagcacttcaggagaagcaagtcatttgcctc
tctggagatgatagctccacctgtatggttatcactgctaaagatgttgagatagttgcc
agcagtgactccagcatcaccagtaaagctagagggagcaacaaggtaaaaatccagcca
gtagccagatatgattgggagcagaagtattactatgggaatctgatagctgtgtcaaat
gactacctggcatatgccattagaggtgccagcaatggctctgccatggtgcgagtcctc
agtgtcagcacagctgagcggacgctgctgaaaggcttcactggtggtgttgcagacctg
gcttttgctcaccttaactccaatcagctggcctgcctggatgaagccggcaaccttttt
gtgtggcgcctggccatggaaaatggaagaatccaagaagagattttagtgaacatcaag
cgacctgatgggactcctcggaacagcttcagaaggatcatatggtgtcctttcatccct
gatgagaatgaggacagctgtgaggaaggcagtcagactgtggctctgttgcatgaggat
cgggcagaggtctgggaccttgatataatccgagccaaccacagttcttggccagtggaa
gtgactaacatcaaagaaggctttattgtggtgaaaggtcacagcacgcgcctcagtgaa
ggagccctttcccctgatggcactgtcttggccacagcaagccatgatggctttgtcaaa
ttctggcagatttacattgaagggcaagatgaaccaagatgtctccatgaatggaaaccc
catgatggcagacccctttcctgcttgctcttctgtgacaatcataaaaaacaggaccca
gaagttcccttttggaggtttctcattacaggagcagatcagaaccgagagctgaaaatg
tggtgtactgtgtcatggacttgtctgcagactgtccgattttctccagatatattcagc
tctatgagtgtccttcctagcctgaaggcctgcctggatctttctgctgagtatttgatt
ttgagcgatgtgcagcgaaaggtcttgtatgtgatggaacttgtccagaatcaagaggag
ggtaaagcatttttcagctccatttcagagttcctgctgacccatccagtcttgagcttc
ggtatccaggtggtcagtcgctgccggctgagacatacagaagtcctgccagcagaagag
gagagtgatggcctgagtgcagaaggcacccagggtacgggagctgtggaatcagctgca
ggagtgctgatcaaactcttctgtgtccacactaaggcccttcaggatgtacaaatcaga
ttccaacctcttcacagtccagacacagctgctccaataccctctcatggctcccatgaa
gattttgcattcccagaccacctggctgacttaggtacagaagggctgggatcagagaaa
ggatccatgcatggctcacagccagatttacgccgcatttcagagctatctgtgcctgtg
gatttcctctccccatccaatgatacaaaactgaaactcatgactccagatgcattcatg
actcccagtacatctctgcaacagatcacaggatcacctggaagcagcatcagttcgctc
acagctgtcactaccatgagcagttcttctgttagcgagcccccaattcctaggccagct
gaagaggtatctccaagctcaaagatgcaattggatggcagccttggactgagcagcagt
agtgggagtctccagacaagcccacgaagtcattcagttctcctctctggtcttcctgat
agattgaccccaaaggttcccatctcgatttccccagaaaaccccacgcatgtgctggag
cggcaagaagtggagcctctggtggtacctcagtcttcccctacccgtgaacgctcccca
gacgtcatttcctcggcctcgactgccatgtctcaggatatccccgagattgcttcagag
accctgcagcgcagctttggtgcagctccttcagggctccccacagaggtcctggattct
aaccatcacacagacagcatggcttctgcagcatcagctttgcacttgctgtctccccgg
aatcgacatggttctgagcatagccatcactccttagacatggctcccaatgaggtggac
atgttaaccgcaccctccctgctagagacagccttacctcaggaaactgcgacttctgac
actaatgtgagccagccatggccagctgctcctgacatcaccagagaaaccaggaacagc
atggcagacagccccaggaatgaagttgaagaaaaacacaagagctcttatcacaggcat
agttaccatatgctgcagcatgacagtcaggatgctagtgctgagcaaagtgatcatgat
gatgaagttgcaagcttagcttctacgtcaggtggatttagtgccaaagcagctgcccag
cggctgcctgtgaaggactggaaagccaaggtgtctcctcgagcctccccaaaacttaag
aggaaggggaagaaagatgatgattccagggatgtatcacagtccccaagatcctttgat
cagcaggttgctccagagtaccaggatgaactgatgtcattgctgaggacacagcagagg
gaaattgcggaactgagacaaaaccagatggagctaatgcagaggttaagtgatcacttg
gacactgtgcagagctcccttatgggccacatagaaagagtggcagaatctcagcaagag
caggagcagcgaaggttggaacaggccttagctgagggacaacagcgtagtgggcaactg
caggagcacctatcccaacagctttcccagtccctctccacagctgcttgcagtcggctg
gaaaggaccatccgtgaagagatgaagaagacggtgcctccttgcatttccaagaccttg
gatcccatcactgggcagctgagtaacaccattgcgaacaagcttacagctgttgagggg
acattgaaggagaatgtcaccaagctggtgaaatcaaagaatctaacagatgctattgcc
cgggcagctgctgataccttgcaagggcccatgcagtcagcgtaccgggaggcgtttcag
aacgtggtgctgcctgcttttgagaagagctgtcagtccatgtttcagcaaatcaacgac
accttcaagcaaggcacacaagaatatattcagcagctggagactcatatgaagaataag
aaagcacgggaccaggatgcccgggactcacagctgaaccagctccgacagctggtcacc
acatttcagagcaccaccgaccaaatggcatccaccattgcaaccagtgtgcatactgag
gtgcaacatcagctccatgtggtcgtgggcaacatgcaagaatccatcctggcccaggtg
cagcgagtgatcaaaggagaagtgagcatggccatgaaggagcagcaggcagctgtcacc
tccagcatcatgcaggcaatgcgctctgctgcaggcacacccatacctgccactcaccta
gactttcagtctcagcaggcacatgtgctgcaactgttacagcagggacacctgaatcaa
gcctttcagcaggctctcaccgctgcagatttgaacctggtcctttatgtttgtgagacg
gttgatcctcagcaagtgtttgggcagcatccatgtccattgtcccagcccgtcctcctg
tctctaattcagcagctttcttcagatttaggagcccggacagaacttaaactcaattac
ttggaagaggcagtgatgcatctagaccacagtgaccccataacccgtgaccacatgggc
tcggttatgaatcaggtgcgacagaagctcttccagttcctgcaggcagagcctcacaac
agcctgagcaagcctgcccgccggctcatgatcatgcttcaaggcctggtcactcccagc
atgtcctaa
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integrated database retrieval system
