Sceloporus undulatus (fence lizard): 121914630
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Entry
121914630 CDS
T07740
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03440
Homologous recombination
sund03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121914630 (PALB2)
03460 Fanconi anemia pathway
121914630 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sund03400
]
121914630 (PALB2)
DNA repair and recombination proteins [BR:
sund03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
121914630 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
121914630 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR5
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
121914630
NCBI-ProteinID:
XP_042294138
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Position
8:complement(1131049..1139015)
Genome browser
AA seq
1190 aa
AA seq
DB search
MEAPRGKAPLDPEEKAQLKEKLAFLKREYRRTFHRLQRAERAERVKTYVKRTVAEQNLLL
IQEENEKDREGSVIGQTALVASEEVPISTCPTRSPGKTPSITFKPEPEVFNQEDVCLLST
PVSKRTGRDCRKVLFGPVEKWAHLSKSRTRAQRRATLPLEKRAESASEALCGDVGCQPEQ
GAGASSGGSQSPVFKRRISSIREAMPELSVATTDGSSCESIPLVLRPECPQEASAKTRDS
FPFPYPLSCESQVPSLSPPCHQKPSVSFENSARENTPSQKDLQSGRKEAALMEENQAQSG
EENSDLRRFAVSSQDLEGHGTPLGVPEGGMYEEGSPGKESPASGFCSGDPPSSKSRANGL
RKPLEPDSSLLEEPLPPAAPAQKVLSSCTVVEGLLFPVEYYVRTTRRMSSRQSEINLEAV
IQSHLGRSKKGQKVAWKERNTELVLSSQEPVGSAGPPKAVPFSAPAASPSFQSSCESAAS
NRGLVQSEGRLQIRRKRRPRERSHSWTLSTSLQDPLENSEVADGSFTSSKSQGREEVGPG
RGKATETPVVAGGRRRGRKGPGKGRNHEAELETILSSPVLPEADPASGFEKDLEEDCERL
LWENNPSQQTGSLPCHSQRGEASPLQWLPPSNPDLQEFCLPEDEFGLLKSEKLKTCVVKE
PESLTAEGQPLASEAGPEESAPGESFRDAGTSAAQETLAASQLPRHLHQTDLSSNELLFS
PAPDGVSCPLQSPLPTPAFPMVGTTPASPALPASQVSPDVFCASSWQATAGDGGEPGTLA
EASPSFPRSGMRRQRLQSQCRASWPAEEELESLEERLAGESLRGSSESPKQNEGEVECLV
EPSLEGILGEGKLQMTSKLKSCSGSSFVDVGTVWWEAADFTALCVLTASETSVSLWRQMD
DGHWAVMHTWHFNKVLVIQIIPLPGVRSLVCVALGSLEIVEIRFLFHSSEGDSVTQSSVK
AGKIKAVLGLRKRRLVTSCGSLRDQEVEVASFSELGRSNERQTLMPPEETILAFADVEGM
QEALVGMTATNCLVVWNLASGQLLRKMSVGCSYPASVCHRAYADLGLLFVVLSHPHAKES
KACGIPAFQVVAINPKTARSATVTSLSLPLGSEGRYLEGEVRDASAAAVMTSGTIAVWDL
FLGRCTAVLPPNSEGKWSLVRWSVTDTCLLAGQNDGSVYIYSYTPHLRSP
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggaggctccgcggggaaaagcccctctggacccggaagagaaggcccagctgaaggaa
aagctggcctttttgaaaagagagtacagaaggacctttcacaggttgcagcgcgctgaa
agagctgagagggtaaaaacctacgtcaagagaacagtggcagagcaaaatcttttgctt
atacaggaggagaatgagaaggaccgtgaaggatctgtcattggccagacagcactggta
gcctccgaggaggtccctatcagtacctgtccgacaaggagccctggaaagacaccatcc
atcaccttcaagcctgaacccgaggttttcaaccaagaagatgtttgcttgctctcaact
cctgtttccaaacgtaccggtcgggactgtagaaaagttctctttggtccagtggaaaaa
tgggcccatctctcaaaaagcagaaccagagcacaacggagggcaaccttgcctttggaa
aagagagcagaatctgccagtgaggcactttgcggagatgttggttgccaaccagaacag
ggggcaggtgccagcagtggtggttctcagtcaccagtctttaagaggagaatcagcagc
attcgggaggccatgccagagttgtcagtggccacaacagatggaagcagctgtgaatcg
attcctttggtgctacgtccagaatgtccacaggaagcttccgcaaagactagagattcc
tttccatttccttaccctctgtcctgtgagagccaggtgccctcccttagtcctccctgc
catcagaagccatctgttagctttgaaaactcagccagagagaacaccccatcacaaaaa
gacctacaaagcggcaggaaggaggctgccctgatggaagagaatcaagcacagtcagga
gaggaaaactcagatctcaggaggtttgcagtgagcagccaggatttggaaggacatggc
accccccttggtgtgcctgagggtggcatgtatgaagaaggaagcccaggcaaggagtct
ccggcctcaggcttctgcagtggagatcctccttccagcaaatcgagggcaaatggttta
agaaaaccgcttgaacctgactcttccctcctggaagagccgcttcctcctgctgcacct
gctcagaaggtgctgagctcttgtacggtggttgagggtctcctcttccctgtggagtat
tatgtgaggaccactcggcgaatgtccagccgccagagcgagatcaacttggaggccgtc
attcagagccatctggggagaagtaagaaagggcagaaagttgcatggaaggagaggaac
acagagctggttttgtcctcccaagagccagtaggaagtgctggcccaccgaaggctgtt
cctttctcagctcctgctgcttctccttccttccagtcctcttgtgagagtgctgcttcc
aatagaggcctggttcagagtgaggggcgcctgcagatcaggagaaagaggagaccaaga
gagaggtctcattcctggaccttgtccacctccttgcaagatccattggagaactcagag
gtagcagatggttctttcacctccagtaagtctcaaggaagggaagaagttggcccaggc
agaggcaaggccacggagactcctgtggtggctggtggcagacggagaggcaggaaggga
ccaggaaagggcagaaaccatgaggctgagttagaaacaatccttagttctcccgttctc
ccagaagctgatcctgcttctggctttgagaaggacctggaagaagactgtgagaggctt
ctttgggagaataacccctctcaacagactggaagtcttccctgtcacagccagagaggt
gaagcatcccctctccagtggctgccgccttctaacccagacctccaagaattctgctta
cctgaagatgaatttggtctcctgaaatcagaaaaactcaagacttgtgttgtgaaagag
ccagagagtttgactgctgagggccaaccacttgccagcgaggctggtcctgaagaatca
gcaccaggggagagcttcagagatgctggcacatctgctgcacaagagactttagctgcc
tcacagcttcctcgccacttgcaccagacagatctttcctcaaatgaactgctcttctcg
ccagccccagatggtgtgagctgcccactgcagtccccactgcccaccccagctttcccc
atggtggggaccactccagcttccccggctttgcctgctagccaagtctctccagatgtg
ttttgtgcttcctcttggcaagcaacagctggtgatggaggtgaacctgggaccttggca
gaggcttctccctccttcccaagaagtggcatgaggagacagcggctgcagagtcagtgc
agagccagttggccagctgaagaggaactagagagccttgaggaaagactggctggagag
tctctgcggggttccagtgaatcccccaaacagaacgaaggggaggtggagtgcctggtg
gaaccatcactggaaggcatcctgggagaaggcaaattgcaaatgacttcaaaactcaag
agctgctctggttcctccttcgtggatgtgggcaccgtctggtgggaagcggcagacttc
accgctctgtgtgttttgacagccagcgagacatccgtttccctctggaggcagatggat
gacggtcactgggcagtcatgcacacctggcacttcaacaaggttctagtcattcaaatc
attcccctgccaggggtccgcagcctagtgtgtgtggctttaggatccctggagattgtg
gagatacggtttttgtttcattcttctgagggcgactctgttacacaatcgtcagtcaaa
gcaggaaagataaaagctgttcttggcctgaggaagaggaggctagtcaccagctgcggc
tccctcagagaccaagaggtggaagtcgcctccttctcagagctgggaaggagcaacgag
agacagactttgatgcctcctgaagagaccatattggcttttgcagatgtggaagggatg
caggaggctttggttggcatgacagccacgaactgccttgtcgtctggaacttggcatct
gggcagctgctgaggaagatgtctgtgggctgctcctaccctgcctctgtctgccacaga
gcctatgctgacttgggcctcctgtttgtggtcctgagccatccgcatgccaaggagagc
aaggcctgtgggatccctgccttccaggtcgtcgccatcaaccccaagacagccaggagt
gcaacggtgacgtcgttgtcccttccactgggcagcgaaggaaggtacctggaaggcgag
gtgagggatgcttctgcagcggccgtgatgacgtctggaaccattgccgtgtgggattta
tttttggggaggtgcacggctgtgctgccccccaactctgaagggaagtggtctctggtc
aggtggtcagtcacggacacctgtttgcttgctgggcaaaacgacggcagcgtttacatc
tacagctacacacctcacctgcgctctccctga
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