Sceloporus undulatus (fence lizard): 121915282
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Entry
121915282 CDS
T07740
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121915282 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sund03400
]
121915282 (MSH2)
DNA repair and recombination proteins [BR:
sund03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121915282 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
AAA_27
MCU
Motif
Other DBs
NCBI-GeneID:
121915282
NCBI-ProteinID:
XP_042295288
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Position
1:complement(20670723..20779595)
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AA seq
960 aa
AA seq
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MAASMNSSSSSSFSSSSFPSLSSSSSNSPREGCWPEGSTAESGFVRAVLALPEKPSTTIR
FFERGDYYTVHGSDAVLAAREVFKTKAVIRILGSGSRKLESVALSKMNFESFLRDLLLVR
QYRAQVYKNKAGNKSTKESEWYLAYKGSPGNLAQFEDILFGNHEMSSSVGVMGIKLMSAD
GQKVVGVGFVDTLVRKLEVCEFPDNDQFSNLEALLVQMGPKECVLPLGETGGDMEKLRQV
VQRGGILITDRKKSEFSTKDIVQDLNRLLRSKKKERVSSATLPEMDKQVAISSLAAVMKY
LELLTDDSNFGQFELSTFDLNQYMTLDHAAFRALNLFQGSTENTQGTQSLAGLLNKCKTP
QGQRLVNQWIKQPLMDKNKIEERLNLVEAFIEDAELRQSLQEDLLRRFPDFSRIAKKFQK
KATLQDCYKIYQAINQIPNMIQALGKTDGNHDVLLEAVFMKPLKELHSDFSNFQMMIDET
LDMNTVESHEYLVKSSIDPNLAELRENMDKLEGKMQGVLKTAAKELSLEPGKSIKLECNA
QYGHFFRITYREEKVLRNNLKYKILETQKNGVKFSNSALKEINEEYIKNRKEYEEMQDVV
VKEIISVASGYKEPIQHLNDVIAQLDAVVSFAHASNTAPTPYVRPTILEKGEGQIVLKAA
RHPCIEVQDDVAFIPNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC
DSAEVTIVDCILARVGAGDSQLKGVSTFMAEMLETSSIIRTATENSLIIIDELGRGTSTY
DGFGLAWAISEYIATKIGAFCMFATHFHELTALADQVPIVNNLHVTALTTEETLTMLYRV
KKGACDQSFGIHVAELAAFPKRVLDNAKAKALELEEFQNIGKPEEKEDEDDEEPAAKKRY
REKEEGEKIIQDFLSKVKAMPLADMSETDIQTKLKELKDEVVARNNSFVNEILSRTKVVS
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggcggcttcgatgaactcttcctcttcgtcctcgttttcttcctcctccttcccctcc
ttgtcctcctcgtcctccaattccccgcgcgagggctgctggcccgagggctccaccgcc
gagagcggcttcgtccgcgccgtcctggccctgcctgagaagcccagcaccaccatccgc
ttcttcgagcggggcgactactacaccgtccacggcagcgacgccgtcctggccgccaga
gaggtcttcaagaccaaggccgtcatccgcatcctgggctcaggaagccggaaactggag
agtgttgcccttagcaagatgaattttgaatcctttttgagggatctgcttctggtgcgt
caatatagggctcaggtgtacaagaacaaagccggaaataaatccaccaaagagagtgaa
tggtatctggcgtacaagggttctccagggaatcttgcccaatttgaggatattctgttt
ggcaaccatgagatgtcatcatctgttggtgttatgggcattaagctaatgtcagctgac
ggacaaaaagttgttggagttgggtttgtggatactttagtgagaaagctagaagtgtgc
gagtttccagataatgatcagttttcaaacctagaagctctgctagtccagatgggacca
aaggagtgtgtgctacctcttggagagaccggtggagatatggagaaactgagacaggtg
gttcagagaggaggaattctgatcacagacaggaaaaaaagtgaattttcaacaaaagac
attgttcaagatcttaaccgtttgctgagatcaaaaaagaaagagcgtgtgtctagtgct
acgttgcctgagatggacaaacaggttgccatctcttccttggctgcagtgatgaagtat
ttagagctcttaacagatgactctaattttgggcagtttgaactttccacttttgacctc
aatcagtacatgacactggatcatgctgctttcagagcccttaaccttttccagggttca
acagaaaacacccaaggtacacaatctctggctggattgttaaataagtgcaaaacacct
caaggacagaggctggtgaatcagtggatcaaacagcccctcatggacaagaacaaaata
gaggaaaggctaaatttggttgaagcctttatagaagatgcagagctaagacagtctctt
caagaagacctcctccgtcgcttcccagacttcagtcggatagcaaaaaaatttcagaag
aaggcaactttgcaggattgttacaaaatataccaggctattaatcagatacctaatatg
atacaagcactaggcaaaactgatgggaaccatgatgtgctgttggaagcagtgttcatg
aagcctcttaaggagctacactcggatttctctaatttccaaatgatgattgatgaaact
ttggacatgaatacggtggagagccatgaatatcttgtgaaatcttcaattgatccaaat
ctcgctgagctaagggagaatatggacaagttagaggggaaaatgcagggtgtgctgaag
actgcagccaaagagctgagtctggaacctgggaagagcatcaaattagaatgcaatgca
caatatgggcatttctttcgaattacctacagagaggagaaggttctgcgaaacaatctc
aaatataagatcttggaaacacagaagaatggggtgaagttctccaatagtgcactgaaa
gagataaatgaggaatacataaagaatagaaaggagtatgaagaaatgcaggatgttgtc
gttaaagaaatcatcagtgttgcatcaggttacaaagagcctatacagcacctgaacgat
gtcatagcccagctggatgctgtggtcagctttgctcatgcctccaatacagcaccaacg
ccatatgtgcgtccaacaattttggaaaagggggaagggcagattgtgctgaaagctgcg
agacacccctgcatcgaagtccaagatgatgttgccttcatccccaacgatgtgaccttt
gaaaagggcaagcagatgttccatatcattactggcccaaacatgggagggaagtcaacc
tacatccgtcaaactggtgtcattgttcttatggcccagattggatgttttgtgccttgc
gactctgcagaggtgacaattgtcgattgcatccttgctcgagtaggggctggagatagt
cagctgaaaggtgtgtctaccttcatggcagaaatgttggagacatcttccatcatcaga
actgcaacagaaaactcacttataatcattgatgaactgggaagaggaacatctacatat
gatgggtttggattggcatgggcaatctcagaatatattgccaccaaaattggagccttt
tgcatgtttgccactcacttccatgaactgacagcactagctgaccaggttccaatcgtg
aataacttgcatgtcacagcattaaccacagaggagactctcacaatgttgtaccgtgtg
aaaaaaggggcttgtgatcagagttttggtatccatgtagcagagctggctgcatttccc
aaacgtgtgctagacaatgccaaagcaaaggctctggagttagaggaattccagaatatt
ggaaagcctgaagagaaggaggatgaggacgatgaagaaccagcagccaagaaacgctac
agagaaaaggaggaaggtgaaaaaataatccaggatttcctttccaaagtaaaagcaatg
ccactggcagacatgtctgaaacagacatccagaccaaactgaaagagctaaaagatgag
gttgtagcaagaaacaatagttttgtaaacgaaatactttcccgaacaaaagttgtgtca
taa
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