Sceloporus undulatus (fence lizard): 121915299
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Entry
121915299 CDS
T07740
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03015
mRNA surveillance pathway
sund03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121915299 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
121915299 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sund03019
]
121915299 (PABPC4)
03041 Spliceosome [BR:
sund03041
]
121915299 (PABPC4)
Messenger RNA biogenesis [BR:
sund03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121915299 (PABPC4)
mRNA cycle factors
Stress granule specific factors
121915299 (PABPC4)
Spliceosome [BR:
sund03041
]
Complex C
Other components
Complex C specific factors
121915299 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RRM_occluded
RBD_RDR6
DUF6262
POP1_C
Motif
Other DBs
NCBI-GeneID:
121915299
NCBI-ProteinID:
XP_042295336
LinkDB
All DBs
Position
9:complement(14568436..14580654)
Genome browser
AA seq
629 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
LELGAKAKEFTNVYIKNFGDDMDDERLKELFNRYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEEANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANAIINQFQPAASGYFMPAVPQAQNRP
TYYAPNHMTQIRPNPRWQQGGRPQGFQGMPNMRQSGPRPSLRHLAPASNAQASRGLPGAT
QRVGVPPSAPNLAPRPPVAAQAPRAVPPYKYASSVRSPHPAAQPLQTPQPAVHVQGQEPL
TASMLAAAPPQEQKQMLGERLFPLIQSMHLSLAGKITGMLLEIDNSELLHMLESPESLRS
KVEEAVAVLQAHQAKKEAAQKVGIVAATS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagctgcaagtagctacccgatggcgtccctatacgtgggcgacttgcacccg
gatgtgacggaggccatgctttacgagaaattcagccccgccggccccgtgctttccatc
cgcgtctgcagagacatgatcacgcggcgctccttgggatatgcgtatgtcaacttccag
cagccggcggatgctgagcgagctctggacaccatgaactttgacgtgatcaagggcaaa
cccatccgcatcatgtggtcccagcgggacccttctctgaggaagtcgggggttgggaac
gtcttcattaagaacctggacaaatccatagacaataaggcactttatgacacattctca
gcttttgggaatatcctttcctgcaaggtggtgtgtgatgagaacggctctaagggctac
gcatttgttcactttgagacacaggatgctgcagaccgggccattgagaagatgaacggc
atgctgctcaacgaccgcaaagtatttgtaggcagatttaagtcccgcaaagagcgtgaa
ctagaattgggagccaaagcaaaggagttcaccaatgtttacatcaaaaactttggagat
gacatggacgatgagaggctgaaggagctgtttaacagatatggtaagaccctcagtgtt
aaagtcatgacagaccccactggaaagtccaaaggctttggctttgtgagctttgaaaaa
catgaagaagccaacaaggccgtagaagaaatgaatgggaaagacatcaatgggaaaatg
gtgtttgtgggccgtgcgcagaagaaagtagagcgccaggcagaattgaagcgcaagttt
gagcagctaaagcaggagagaatcagccgctatcagggagttaatttatacattaagaac
cttgatgatacaattgatgacgagaaactgaggaaggaattctctccttttgggtctatc
acaagtgccaaggtcatgctggaagatgggcgaagcaaaggctttggcttcgtctgcttt
tcttctccagaagaagccaccaaagctgtgacagaaatgaatgggcgcattgtaggctcc
aagccattgtacgttgccttggcacagaggaaggaggagcggaaagcccacctcaccaac
cagtacatgcagcgcattgctgggatgagagccctgccggccaatgcgatcatcaaccag
ttccagccagctgcaagcgggtattttatgcccgctgtgccccaggctcagaacagaccc
acttactatgcaccaaatcacatgactcagattcgccccaacccacgttggcagcaagga
gggaggcctcaaggcttccaaggtatgccgaacatgcgccagtctggacctcggccaagc
ctgcgccacttggctcctgcaagtaatgctcaggcctcccgtggcttgcctggtgccacc
caaagggttggggttcctccctcagctccgaatttagcccctcgaccccctgtggctgcc
caagctcccagggctgttccaccatacaaatacgcctcaagcgtccgcagcccccaccca
gctgcacagcctttacagacccctcagcctgctgttcacgttcagggacaggagccttta
actgcatccatgctagctgctgctcctccccaggaacagaaacagatgctgggagaacgt
ttgttccctctcatccaatctatgcacctgagccttgcgggaaagatcacaggaatgctg
ctagagatcgacaattctgagttactgcacatgctggagtccccagaatccctccgctca
aaggtggaggaggctgtggcagtgctgcaggctcaccaagctaagaaagaagccgcccag
aaagtgggcatagttgctgctacctcttaa
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