Sceloporus undulatus (fence lizard): 121916018
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Entry
121916018 CDS
T07740
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03008
Ribosome biogenesis in eukaryotes
sund03013
Nucleocytoplasmic transport
sund03015
mRNA surveillance pathway
sund05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121916018 (NXF1)
03015 mRNA surveillance pathway
121916018 (NXF1)
03008 Ribosome biogenesis in eukaryotes
121916018 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121916018 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sund03019
]
121916018 (NXF1)
03009 Ribosome biogenesis [BR:
sund03009
]
121916018 (NXF1)
Messenger RNA biogenesis [BR:
sund03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121916018 (NXF1)
mRNA cycle factors
Stress granule specific factors
121916018 (NXF1)
Ribosome biogenesis [BR:
sund03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
121916018 (NXF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_8
UBA_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
121916018
NCBI-ProteinID:
XP_042296650
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All DBs
Position
9:complement(32658003..32685041)
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AA seq
631 aa
AA seq
DB search
MADGGGKGGYSEHDDRVGGGGGGGGGGGGNRGFPGRRRKGRGPFRGKMYSETNHHQRNWS
SAGPGPHNWLEEEDGDVLMSDAHDVLRSRYTPYGQRPNRPDRGSLSNVNLTVRRNLNIPD
RNVPRNTANKQSWYKITIPYGRKYEKAWLINAIQNLCTIPFSPVEFHYASNRVLFYVDEA
AVANALKQASRRIVAPDGYKVVLIVNPCPPPASVYRDLKPEENEQLKLCMSKRYDGSQQA
LDLKNIHADSDLVAQNIDMVLSRRSCMVAVLEIIQENIPELLSLNLSENKLYRLDDMADL
PMKAPNLKILNLSGNQLKSERELDRLKGLKLEELWLDSNPLCDNFRDQSTYISAIRERFP
KLLRLDGHELPPPITFDVETPTTLPPSKGSYFCSEGLKVLIVQFLQQYYTIYDSGDRQGL
LDAYHDGACCSLSIPIANPCRSTLADYFKSSRNVKKLKDPHMRFRLLKHTKLSVVAFLSE
LPKTQHDINSFVVDVCAQTNTLLCFTLNGIFKDVDSKCRDSVRAFTRVFITVPVGHNGLC
IVNDQLFIRKATNMEIRKAFVMPAPTPSSSPVPTLTAEQQEMLQNFSLQSGMNLEWSQKC
LLDNDWDYAKAAHAYGQLKAEQKIPEVAFIH
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggaggagggaaaggaggctacagcgaacatgatgatcgtgtgggtggagga
ggaggtggaggaggtggcggcggtggcaacagaggcttccctggacggaggagaaaaggc
cgggggcccttccgaggaaaaatgtacagtgaaacgaaccaccatcagcggaattggagc
agtgcaggtcctggtcctcacaactggctggaggaagaggatggagatgttctcatgagc
gatgcacatgatgtgctgcgatcccgctacactccttatggacagcgtccaaaccgacca
gatcggggaagtctaagcaatgttaatctcacagtgagacggaatctgaatattcccgac
cggaatgttcccaggaataccgccaacaagcagtcctggtataagattacgattccctat
ggaaggaaatatgagaaggcctggttgataaatgccattcagaacttgtgcaccatcccc
ttcagcccagtagagtttcactatgccagtaatcgagtactgttttacgtggacgaagct
gctgtggccaatgccctcaaacaggcatcaaggaggattgttgcaccagatggctacaag
gtggtgctaatcgtgaacccgtgccctccgcccgcgagtgtctatcgtgatctaaaacca
gaggaaaatgagcaactgaagctttgcatgagtaaaagatatgatggttcccagcaggct
ttggatttgaagaatattcatgcagattcagatctagtagcacaaaacattgacatggtg
ttgagtcgccgatcctgcatggtagctgtgctggagatcattcaagagaacatccctgag
ctcctttctttgaacctgagtgagaacaagctctatcggctggatgatatggctgacctg
cccatgaaggctcccaacctgaagatcctcaatttatctggcaaccaattgaagtcagaa
cgtgagcttgacaggttgaaaggcttgaagcttgaagaactgtggctggacagcaaccca
ctgtgtgataacttccgggaccagtccacctacatcagtgccatccgagaacggtttcca
aaactactgagactggacggtcatgaactccctcctcctatcacttttgatgttgaaaca
ccaaccaccctccctccaagcaagggcagttatttttgctctgagggcttgaaagtgcta
attgtacagtttctgcaacaatattacaccatctacgactctggggaccggcaagggctg
ttggatgcctatcatgatggagcatgttgctccttgagtattcctatagcaaacccttgc
aggagcactttggctgactacttcaaaagcagcagaaatgtgaagaaactgaaggatcca
cacatgcgcttccggcttctcaagcacacaaagctgagtgttgtggctttcctcagtgag
cttcccaagactcaacatgatattaattcctttgtggtggatgtctgtgcacaaacgaac
acactgctttgtttcacactgaatgggattttcaaggacgtggacagcaagtgtcgggac
tcggtgcgagccttcacccgcgtattcatcactgtgcctgttggccacaatgggctgtgc
attgtgaatgaccagctcttcattcgtaaggccaccaacatggaaatccgcaaagctttt
gtcatgccagcacccacaccttcttccagccctgtacccacactcacagcggaacaacag
gagatgttgcaaaatttctcgctacagtctggaatgaacctcgagtggtctcagaagtgc
cttttggacaatgattgggactatgctaaagcggcccatgcctacggccagctcaaggct
gagcagaagattccagaagtggcgttcatccactga
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