KEGG   Sceloporus undulatus (fence lizard): 121916528
Entry
121916528         CDS       T07740                                 
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
sund  Sceloporus undulatus (fence lizard)
Pathway
sund03030  DNA replication
sund03410  Base excision repair
sund03420  Nucleotide excision repair
sund03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sund00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    121916528 (RFC5)
   03410 Base excision repair
    121916528 (RFC5)
   03420 Nucleotide excision repair
    121916528 (RFC5)
   03430 Mismatch repair
    121916528 (RFC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sund03032]
    121916528 (RFC5)
   03036 Chromosome and associated proteins [BR:sund03036]
    121916528 (RFC5)
   03400 DNA repair and recombination proteins [BR:sund03400]
    121916528 (RFC5)
DNA replication proteins [BR:sund03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    121916528 (RFC5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    121916528 (RFC5)
Chromosome and associated proteins [BR:sund03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    121916528 (RFC5)
DNA repair and recombination proteins [BR:sund03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     121916528 (RFC5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    121916528 (RFC5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_11 AAA_22 AAA_lid_RFC1 AAA_assoc_2 RuvB_N ResIII AAA_14 DEAD PhoH AAA_16 DUF815 nSTAND_NTPase5 AAA_24 AAA_7 AAA_19 AAA_5 AAA_30 TIP49 ATPase_2 TniB DNAX_ATPase_lid nSTAND3 Mg_chelatase Thioredoxin_6 RNA_helicase
Other DBs
NCBI-GeneID: 121916528
NCBI-ProteinID: XP_042297674
LinkDB
Position
10:complement(2691555..2707057)
AA seq 336 aa
MASPEERMGAARSANLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGT
GKTSTILACAKQLYKEKEFNSMVLELNASDDRGIDIVRGPILNFASTRTIFKKGFKLVIL
DEADAMTQEAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP
RLQHVIEKEKVDVSDDGMKALVTLSNGDMRRSLNILQSTNMAFGKVTEETVYTCTGQPLR
SDIANILDWMLNQDFTTAYHNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIQLLIK
MADIEHHLAVGTSEKIQLGALVGAFQVTRDLIAAEA
NT seq 1011 nt   +upstreamnt  +downstreamnt
atggcgagccccgaggagcgaatgggggccgcgaggagcgcgaacttgccttgggtagaa
aaataccggcctcagacgctaaatgatctgatctctcatcaggacattctgagtaccatt
cagaagttcatcagtgaagatcggttgcctcatcttctcttctatgggcctccaggaact
ggcaagacttccaccattttggcttgtgctaaacaactttacaaagaaaaggaattcaac
tctatggttctggagctaaatgcttcagatgatcgaggtattgacattgtcagagggcct
atcctgaactttgccagcacaaggaccatctttaagaaaggctttaagctggtgattctg
gatgaagcagatgccatgacgcaggaagcacagaatgccctcaggcgtgtaatagaaaaa
ttcacagagaacacccgattttgcctgatctgcaactatctctccaagatcatcccagcc
ttgcagtctaggtgcaccagatttcgctttggtcctctcacaccagagctcatggttcct
cggttgcagcatgtcattgagaaggagaaagtcgatgtaagtgatgatggaatgaaggca
ctggtgacactgtcaaacggtgatatgcgcagatctctgaacattttacagagcacaaac
atggcttttggaaaggtgacagaggagacagtgtacacctgtactgggcagccactcaga
tctgacattgccaacatccttgactggatgctgaaccaagacttcaccactgcctaccac
aatatcatggaactgaagacattgaaggggctggcactgcatgatatcctgacagaaatt
cacctgtttgtccaccgagttgactttccatcatcagttcgaatccagttgctgatcaag
atggcagatattgagcatcatctagctgtggggacaagtgagaagatccagctgggggct
cttgttggtgccttccaggtcaccagagacctcattgcagctgaagcttaa

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