Sceloporus undulatus (fence lizard): 121916528
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Entry
121916528 CDS
T07740
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03030
DNA replication
sund03410
Base excision repair
sund03420
Nucleotide excision repair
sund03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121916528 (RFC5)
03410 Base excision repair
121916528 (RFC5)
03420 Nucleotide excision repair
121916528 (RFC5)
03430 Mismatch repair
121916528 (RFC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sund03032
]
121916528 (RFC5)
03036 Chromosome and associated proteins [BR:
sund03036
]
121916528 (RFC5)
03400 DNA repair and recombination proteins [BR:
sund03400
]
121916528 (RFC5)
DNA replication proteins [BR:
sund03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121916528 (RFC5)
DNA Replication Termination Factors
ELG1-RFC complex
121916528 (RFC5)
Chromosome and associated proteins [BR:
sund03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121916528 (RFC5)
DNA repair and recombination proteins [BR:
sund03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121916528 (RFC5)
Check point factors
HRAD17(Rad24)-RFC complex
121916528 (RFC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_22
AAA_lid_RFC1
AAA_assoc_2
RuvB_N
ResIII
AAA_14
DEAD
PhoH
AAA_16
DUF815
nSTAND_NTPase5
AAA_24
AAA_7
AAA_19
AAA_5
AAA_30
TIP49
ATPase_2
TniB
DNAX_ATPase_lid
nSTAND3
Mg_chelatase
Thioredoxin_6
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
121916528
NCBI-ProteinID:
XP_042297674
LinkDB
All DBs
Position
10:complement(2691555..2707057)
Genome browser
AA seq
336 aa
AA seq
DB search
MASPEERMGAARSANLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGT
GKTSTILACAKQLYKEKEFNSMVLELNASDDRGIDIVRGPILNFASTRTIFKKGFKLVIL
DEADAMTQEAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP
RLQHVIEKEKVDVSDDGMKALVTLSNGDMRRSLNILQSTNMAFGKVTEETVYTCTGQPLR
SDIANILDWMLNQDFTTAYHNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIQLLIK
MADIEHHLAVGTSEKIQLGALVGAFQVTRDLIAAEA
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggcgagccccgaggagcgaatgggggccgcgaggagcgcgaacttgccttgggtagaa
aaataccggcctcagacgctaaatgatctgatctctcatcaggacattctgagtaccatt
cagaagttcatcagtgaagatcggttgcctcatcttctcttctatgggcctccaggaact
ggcaagacttccaccattttggcttgtgctaaacaactttacaaagaaaaggaattcaac
tctatggttctggagctaaatgcttcagatgatcgaggtattgacattgtcagagggcct
atcctgaactttgccagcacaaggaccatctttaagaaaggctttaagctggtgattctg
gatgaagcagatgccatgacgcaggaagcacagaatgccctcaggcgtgtaatagaaaaa
ttcacagagaacacccgattttgcctgatctgcaactatctctccaagatcatcccagcc
ttgcagtctaggtgcaccagatttcgctttggtcctctcacaccagagctcatggttcct
cggttgcagcatgtcattgagaaggagaaagtcgatgtaagtgatgatggaatgaaggca
ctggtgacactgtcaaacggtgatatgcgcagatctctgaacattttacagagcacaaac
atggcttttggaaaggtgacagaggagacagtgtacacctgtactgggcagccactcaga
tctgacattgccaacatccttgactggatgctgaaccaagacttcaccactgcctaccac
aatatcatggaactgaagacattgaaggggctggcactgcatgatatcctgacagaaatt
cacctgtttgtccaccgagttgactttccatcatcagttcgaatccagttgctgatcaag
atggcagatattgagcatcatctagctgtggggacaagtgagaagatccagctgggggct
cttgttggtgccttccaggtcaccagagacctcattgcagctgaagcttaa
DBGET
integrated database retrieval system