Sceloporus undulatus (fence lizard): 121916720
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Entry
121916720 CDS
T07740
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121916720 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sund03400
]
121916720 (MSH6)
DNA repair and recombination proteins [BR:
sund03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121916720 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
121916720
NCBI-ProteinID:
XP_042298035
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Position
1:complement(20279750..20306474)
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AA seq
1333 aa
AA seq
DB search
MSRQSSLLNFFPPSRGRKRGGSDAEEEEDMEDLEDARRRSGKAPRSKRGSNRAPPADCDF
CEFTPGDLVWAKLEGYPWWPSLVYKHPTEGILFRGRGRASRIHVQFFDDDPSRGWVSIRY
IRPYAGSTGRDTQRGGVFYSSKPEIRRAMELADAAMKKDKSERLDLAVCDKPSESEEEEE
EDMEQVSDEGDEFSATKEVKHKNKRTAGRQRHHGKTKKRKIMDSDSDNEGSDMEFKPDEA
SSDENSVGIGDSETSESEINSEKKVKRPIKVPPKHTIKPTQEKEYRLPQKEYPKNDVPET
PIREINLSSEILYKLASYAAPECYDYRANINGGGDTPAVWEHDKIEWLQDGKRKDGRRRR
QNDPEYDPCTLFVPEDYLRNCTPGMRKWWELKSQNFDCVIFYKVGKFYELYHMDAVVGVN
KLGLVFMKGTWAHSGFPEIAFDRFSNILVQKGHKVVRVEQMETPEMMEARCKSMSHPTKF
DRVVHREVCRIISKGTQTYSILDGDFSETHNKYLLCVKEKCDDSAGIHRTYGVCFVDTTV
GKFYLGQFLDDRHSSRFRTLLAHNTPVQILFERGNPSAETQKIMKSLLPSTVQEGLTAGS
QFWNASKTLKTLIEEGYFQDKENSNSGAVLPPVIRSMTAESDSLGLTPGENSELALSALG
CCVFYLKKCIIDKEILSMAKFEEYVPVDIDIGKRTKSSSIFAKTNQRMVLDGVTLANLEI
LENATGSAEGTLLERIDTCCTPFGRRLLKQWICAPLCNPCAISDRLDAIEDLVAEAAKMS
EIRDLLKKLPDLERLLSKIHSIGSSLKDQNHPDNRAVMYEEARYSKKKIVDFLSALEGFK
VVVEVISILEDIVGGFASKTLRQTVTVKSKNPEGFFPDLKAELAKWDAAFDHTTARKTGV
VNPQPGFDSDYDKALEDISDVEERLRQYLEEQRKRLGIRAMMYWGAGKNRYQMEIAETAV
PRDLPDEYVLKSSRKGYKRYWTKDIEQMLTDIVNAEDRRDAAQKACMKRLFYDFDKNSRD
WQTAVECIAVLDVLLCLAHHSQGCDGPLSRPVILLPEDNTPPFLELKHSRHPCITKTFFG
DDFIPNDIFIGVEDEKGNSENKAPCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCFVPAES
CRLTPVDRVFTRLGASDRIMSGESTFFVELSETSSLLQHATEHSFVLMDELGRGTATFDG
TAIASAVVKELSESIKCRTMFSTHYHSLVEDYSLSPSVQLGHMACMVENESEDPSQETIT
FLYKFVKGACPKSYGFNAAKLANIPEEVIQKGHKKAKEFERSTVSLKLFRNLCQMADATP
PSRDGLKKVLLQV
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgccagagcagcctcctcaacttcttccctccttcgcggggcaggaagagaggc
ggcagcgacgccgaggaggaggaggacatggaggacttggaggacgcccggcggcgctcc
ggaaaggccccccgcagcaagcggggcagcaacagggccccgccggccgactgtgacttc
tgtgaatttacacctggtgatttagtttgggccaagcttgaaggatatccatggtggcca
tctcttgtgtacaagcatccaacagaaggaatacttttccggggcagaggaagagcatct
cgcatccatgtacaattttttgatgatgacccatcgaggggctgggttagcattagatac
ataagaccctatgcaggttctacaggcagagatacccagaggggaggtgtgttttacagt
tcaaagcctgagattagaagagcaatggaactggcggatgcagctatgaaaaaagataaa
agtgagcgacttgatctggcagtgtgtgacaaaccttcagaaagtgaggaggaagaagag
gaagatatggagcaggtgagcgatgagggtgatgaattttctgcaacaaaggaagtgaaa
cataaaaataaaaggacagctggacgacagcgacatcatggaaaaaccaagaagagaaag
attatggattcagacagtgataatgaaggttcagacatggagtttaagcctgatgaagcc
agcagtgatgaaaatagtgttggaataggtgacagtgaaacttctgaatctgagataaac
tcagaaaagaaagtaaaacgtcccattaaagtcccacctaaacacaccattaaaccaaca
caggaaaaggaatacagacttccccagaaggaatatcctaaaaatgatgttcctgaaact
cccatcagagaaattaatctttcctctgagattctgtataagttagcatcttatgcagct
cctgaatgctatgattatcgagcaaacattaatggaggaggagatactccagctgtgtgg
gaacatgataaaattgagtggctccaagatggtaagcggaaagatggtcgtaggagacgg
cagaatgatccagaatatgacccatgtactctttttgtgccagaggactaccttagaaac
tgtacgccaggaatgcggaagtggtgggagctgaagagccagaactttgactgtgttatc
ttctataaggttggaaaattctacgagttgtaccacatggatgctgttgttggggttaac
aagcttggattggtgttcatgaaaggcacttgggctcactcaggtttcccagaaatcgcc
tttgacaggttctcaaatatcctagtccagaaaggtcacaaagttgtccgtgttgagcag
atggagactccagagatgatggaggcacgctgtaaatccatgtctcacccaacaaaattt
gatagagttgtgcaccgagaagtatgtaggataatttccaaagggacacaaacctacagt
attctggatggtgacttttccgaaactcataacaagtaccttctttgtgtgaaagaaaaa
tgtgatgattctgctggcatccatcgtacctatggggtgtgctttgtcgatacaacggtt
ggaaagttctacttagggcagttcctggatgaccgccatagttcaaggtttagaactctt
ttggctcataatactcctgttcagattctctttgagcgggggaacccctctgcagaaaca
cagaagataatgaaaagcttacttccttctactgtgcaagaaggtttgactgctggttct
cagttctggaatgcatccaaaacgctaaaaactctcatcgaggaaggctacttccaggac
aaggaaaattcaaatagtggagcggttcttcctccagtaatccgatccatgactgcagaa
agtgactcattaggacttactcctggggaaaacagtgagcttgctctatcagctcttggt
tgttgtgttttctaccttaaaaaatgtattattgacaaggaaattttatcaatggcaaaa
tttgaagaatatgttcctgtggacattgatattggaaaaagaacaaaatcaagtagtatc
tttgctaaaacaaatcagaggatggtgctggatggcgtgactctagcaaacctggaaata
ctggagaatgccactggttcagcagaaggcacattactagaaaggattgacacatgttgt
acaccttttgggaggagacttctgaaacagtggatctgtgcaccattgtgtaatccttgt
gctatcagtgaccgcctcgatgcaatcgaagacctcgtggcagaagctgccaaaatgtct
gaaatccgggaccttcttaaaaaactcccggaccttgagaggcttctgagcaaaattcac
agtattggatcttcacttaaggaccagaaccatccagacaacagggctgttatgtatgag
gaagccaggtacagcaagaagaagatagtagacttcttgtctgcattagaaggatttaaa
gtggttgttgaagttatctcaattttggaggatattgttggtggttttgcatccaaaaca
ttacgacagacagtgacagtcaaatctaaaaacccagaaggctttttcccagacttaaaa
gcagaacttgcaaagtgggatgctgcctttgatcatactactgcacgtaaaactggtgtg
gttaatccacaacctgggtttgactctgactatgataaagctttagaggatataagtgat
gttgaggaacgccttcgccagtatttggaagagcagcgcaaacgacttgggatcagagcc
atgatgtattggggagcaggcaagaatcgttatcaaatggaaattgcagaaactgcagtg
cctcgagacttaccagatgaatatgtgttgaagtctagcagaaaaggctataagcgttac
tggaccaaagatatagagcagatgctgactgatattgtcaatgcagaagatcgaagagat
gctgcacagaaagcttgtatgaaaaggttgttctatgactttgataaaaacagcagagac
tggcaaacggcagtagaatgcattgcagttctagatgtcctattgtgcctcgctcatcac
agtcagggatgtgatggaccactgtcccgacctgtaatactgctgccagaagacaacacc
ccaccatttttggagctcaaacattcacgccacccttgcatcacgaaaacattctttgga
gatgacttcattcctaatgatatcttcataggtgtagaggatgaaaagggaaactctgaa
aacaaggccccctgcgttctagtgactgggccgaacatgggcggaaagtctacactcatg
agacaggctggcctgttggtaataatggcccagttgggatgttttgtacctgctgagtct
tgcaggctcactcctgtcgacagagtgttcaccagattaggagcttcagacagaattatg
tcaggggaaagtacattctttgtggagctgagtgagacttccagtctgctacagcatgca
acagaacattcctttgttctcatggatgaacttggcagaggtacagcaacatttgatgga
actgccatcgcaagtgcagttgtcaaagaactttcagagagtattaaatgccgcacaatg
ttttcaacacactaccattctttagtagaggattattctctcagtccctctgtgcaattg
ggacacatggcatgtatggtggaaaatgagagcgaagatcctagtcaagaaacaatcact
ttcctctataaatttgttaaaggagcttgccctaaaagctatggttttaatgctgcaaag
cttgctaacattccagaagaagttattcagaagggtcacaaaaaagcaaaggaatttgag
agaagtactgtctcgttgaaactgtttaggaacctttgccagatggctgatgccacacca
ccatcccgagatggtcttaagaaagttctgcttcaggtttga
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