Sceloporus undulatus (fence lizard): 121916949
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Entry
121916949 CDS
T07740
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121916949 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sund03041
]
121916949 (PRPF8)
Spliceosome [BR:
sund03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121916949 (PRPF8)
Complex C
U5 SnRNP specific factors
121916949 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
121916949
NCBI-ProteinID:
XP_042298463
LinkDB
All DBs
Position
11:complement(5718386..5734573)
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGVFPFRGPCPPMPAPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMAENPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGFEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgtcttccccttccgagggccctgcccgcccatgcccgcccctctggccccg
ctgccggactacatgtccgaggagaagctccaggagaaagcccgcaaatggcagcagctg
caggccaagcgctacgccgagaagcgcaagttcggctttgtggacgcccagaaggaggac
atgcccccggagcatgtgcgcaagatcatccgcgaccatggagacatgaccaacaggaag
ttccgccacgacaagcgcgtctacctgggggccctgaagtacatgcctcacgccgtcctg
aagctcctggagaacatgccgatgccgtgggagcagatccgggacgtgcccgtcctctac
cacatcaccggcgccatttcctttgttaacgagatcccctgggtcattgagcccgtctac
attgcccagtgggggtccatgtggatcatgatgcggcgggagaagagggacaggcggcac
ttcaagcgcatgcgcttcccgccctttgatgatgaagagccgcctctcgactacgccgac
aacatcctggatgtggagcccctggaggccatccagttggagctggaccctgaggaggat
gccccagtcctggactggttctatgaccaccagccgctgaaggacagccgcaagtatgtg
aatggttccacctaccagcgctggcagttcacgctacccatgatgtccactctctaccgc
ctggccaaccagctcctcacagacctggtggacgacaactacttctacttgtttgacctg
aaggccttcttcacttccaaggccctcaacatggccatccccggagggcccaaatttgag
cctctagtccgagacatcaacctgcaggacgaggactggaacgagttcaatgacatcaac
aaaatcatcatccggcagcccatccggaccgagtacaagatcgccttcccctacctgtac
aacaaccttccccatcatgtccacctcacctggtaccatacacctaatgtggtcttcatc
aaaactgaggaccccgacctcccagccttctactttgatcccctcatcaacccaatttct
cacagacactcggttaagagccaggagcccctcccagatgacgatgaggagtttgagctg
ccagagtttgtggagcccttcctgaaagagacccccctctatacggacaacacagccaac
ggcatcgccctcctctgggccccccggcccttcaacctgcgctcgggcagaacccgccgg
gccctcgacatccccctcgtcaagaactggtaccgagaacactgtcctgctgggcagcca
gtcaaagtgcgggtctcataccagaagctcctgaagtactatgtcttaaatgctctcaag
caccggcctcccaaggcccagaagaagaggtacctcttccgctccttcaaggctaccaag
ttcttccagtcaaccaaactggactgggtggaggtgggccttcaggtctgccgccagggg
tacaacatgctcaacctgctgatccaccgcaagaacctcaactatctccacctggactac
aacttcaacctgaagcctgtcaagaccctcaccactaaggagaggaagaagtctcgcttt
ggcaatgctttccacctttgccgggaggtgctgcgtctgacaaagctggtagtggacagc
catgtccagtaccgactggggaatgtggacgccttccagctggcagatggccttcagtac
atctttgctcatgttgggcagctgacagggatgtaccggtacaagtacaagctgatgagg
cagatccggatgtgcaaagacctcaagcacctcatctattaccgcttcaacaccggtcca
gtgggcaaaggccccggctgtggcttctgggcccctggctggcgagtgtggctgttcttc
atgagaggcatcacaccactgctggagcgctggctgggcaaccttctggccaggcagttc
gaaggccgtcactcaaagggtgtagccaagacggtcaccaaacagcgagtggagtcccac
tttgacctggagttgcgggcggcagtgatgcacgacatcctggacatgatgccagagggg
atcaagcagaacaaggcccggaccatcctgcagcacttgagtgaagcctggcggtgctgg
aaggctaacattccctggaaggtgcccgggctgcccacacccattgagaacatgatcctg
cgctacgtcaaggccaaagctgactggtggaccaacacagcccactacaaccgagagcgc
atccgccgtggggccactgtggacaagacagtctgcaagaagaacctgggccgtctcacc
cggctgtacctgaaggctgagcaggagcggcagcacaactacttgaaggatgggccctac
atcacagccgaggaggctgtggctgtctacaccaccactgtccactggctggagagccgg
cgcttctcgcccatcccctttcctccactctcctacaaacatgacaccaagctgctgatc
ctagccttggagaggttgaaggaggcctacagcgtaaagtcccgcctgaaccagtcacag
cgagaggagctgggcctcattgagcaggcctacgacaatccccatgaggccttgtcccgc
atcaagcgacacttgctgactcagcgagccttcaaagaggtgggcattgagttcatggac
ctgtacagccacctggtccctgtatatgatgtagagcctctggagaagatcacagatgct
tacttggaccagtacctctggtacgaggcagacaaacggcggctcttccccccatggatt
aagccggctgacactgagcccccgcccttgctggtgtacaagtggtgccagggcatcaac
aacctgcaggatgtctgggagaccagtgaaggcgagtgcaatgtcatgctggagtcgcgc
tttgagaagatgtacgagaagattgacttgacgctgcttaacaggctgctgcgcctcatt
gttgaccacaacattgccgattacatgacagcaaagaacaatgtggttatcaattacaag
gacatgaaccacaccaattcctatgggatcatccggggtctgcagtttgcctccttcatc
gtacagtattatggcctggtgatggatctccttgtgttgggcctccaccgcgccagtgag
atggctggccctccacagatgcccaacgacttcctgagcttccaggacattgccacagag
gtggcccaccccatccgcctcttctgcagatacattgaccgcatccacatcttcttcagg
ttcacggccgacgaggcaagggacctgatccagcgctacctcacagaacacccagatccc
aacaatgagaatattgtgggctacaacaacaagaagtgctggccccgggacgcccgcatg
cgtctcatgaaacacgacgtcaaccttggccgcgctgtcttctgggacatcaagaaccgt
ctgcctcgttcagtcaccactgtccagtgggagaacagcttcgtctctgtctacagcaag
gacaaccccaatctgctcttcaatatgtgtggctttgagtgccggatcctgcccaagtgc
cgcacaagctacgaggagttcacccacaaagatggggtctggaacctgcagaacgaggtg
accaaggagcggacagcgcagtgttttctgcgggtggatgatgaatccatgcagagattc
cacaaccgggtccgtcagatccttatggcctctggctcaaccacattcacaaagattgtg
aacaagtggaacacagccctaatcggcctgatgacctatttccgtgaagccgtggtgaac
acccaggagctgctggatctgctggtgaagtgtgaaaacaagatccagactcgaatcaag
attggtctgaactccaaaatgcccagccgtttcccgccagtggtcttctacactcccaag
gagttggggggcctgggcatgctctctatgggacatgtcctcatcccccagtctgatctg
aggtggtccaagcagacagacgtgggcatcacgcatttccggtcaggaatgagccacgag
gaggaccagctgattcccaacttgtatcggtacatccagccctgggagagtgagttcatt
gactcccaacgagtgtgggcagagtatgccctcaagaggcaagaagccattgcccagaac
aggcgcctgaccctggaggacttggaggactcgtgggaccgaggcatccctcgcatcaac
acccttttccagaaggaccgccatacactggcatatgacaaaggctggagggtcaggaca
gacttcaagcaataccaggttctgaagcagaaccctttttggtggacccaccagcgccat
gacgggaagttgtggaacctgaataactaccggacagacatgatccaagcactcgggggc
gttgagggcatcctggagcacaccctcttcaaggggacctacttccccacctgggagggt
ctcttctgggaaaaagccagtgggtttgaggagtccatgaagtggaagaagctgaccaat
gctcagcgctcaggtctcaaccagatcccaaacagacggttcaccctctggtggtcgccc
accatcaacagagccaacgtgtacgtgggcttccaggtgcagctggatttgacaggtatc
ttcatgcacggcaagatccccactctgaagatctccctcatccagatcttccgggcccat
ttgtggcagaagatccacgagagcatcgtcatggacttgtgtcaggtttttgaccaagag
ctggatgccctggagattgagacagtgcagaaggagacaatccacccccggaagtcctac
aaaatgaactcctcctgcgctgacatcctcctctttgcctcctacaagtggaatgtttct
cggccctcgctgctggcggactccaaggacgtgatggacagcaccaccacccagaagtac
tggatcgacatccagctgcgttggggcgactatgactcccatgacattgagcgctatgcc
cgggcaaagttcctggactacaccacagacaacatgagcatctatccttcccccaccggt
gtcctcattgccatcgatctggcctacaacctacacagtgcctatgggaactggttccca
gggagcaagccgctgatccagcaggccatggccaagatcatgaaggccaacccggctctt
tatgtcctgcgggagcggatccggaaggggctgcagctctactcctcggagcccaccgag
ccctacctctcctcccagaactacggggagcttttctccaaccagatcatctggttcgtt
gatgacaccaacgtctaccgggtcaccattcacaagaccttcgaagggaatttgacaaca
aagcccatcaatggtgccatcttcatcttcaacccccggactgggcagctctttttgaag
atcatccacacttcagtgtgggctgggcaaaagcgcttgggccagctggccaagtggaag
acagctgaagaggtggcagctctcatccggtcccttcctgtggaggagcaaccaaagcag
atcatcgtcacccgcaagggcatgctggaccctctggaggtgcacttgctggacttcccc
aacatcgtcatcaaaggctctgagctgcagctgcccttccaggcctgtctgaaggtggag
aagtttggggacctgatcctgaaggccacggagccccagatggtcctcttcaacttgtac
gacgactggctgaagaccatctcctcatatacggctttctcccggctgatcctcatcctc
cgggctttgcacgtgaacaatgaccgggcgaaggtcatcctgaagccagacaagaccacc
atcacggagccccaccacatctggcccacgctgacggatgaggagtggatcaaggtggag
gtgcagctgaaggacctgatcttggccgactacggcaagaaaaacaatgtgaacgtagcg
tccctgacgcagtcggagatccgggacatcatcctggggatggagatctcggccccctcg
cagcagcgccagcagatcgcggagatcgagaagcagaccaaggagcagtcccagctgaca
gccacccagacccggacggtcaacaagcacggggacgagatcatcacctccaccaccagc
aactacgagacccagactttctcctccaagaccgagtggcgggtcagggccatctctgct
gccaacctccacctgcggacaaatcacatctatgtgtcctcggatgacatcaaagagacc
ggctacacctacatcctccccaagaacgtgctgaagaagttcatctgcatctcagacctc
cgggctcagatcgctggctacttgtatggagtgagccccccagataacccccaggtgaag
gagatccgctgcatcgtgatggtgcctcagtgggggacccaccagacggtccacctgcct
ggacagctcccccagcatgagtacctcaaggaaatggagcccttggggtggatccatacg
cagcccaacgagtccccacagctctccccacaagatgtgacgacccacgccaaagtcatg
gcagagaatccttcctgggatggagagaagaccatcatcatcacctgcagcttcaccccc
ggctcctgcaccctgaccgcctacaagctgacccccagcggctttgagtggggccggcag
aacacggacaaagggaacaaccccaagggctacctgccctcccactatgagcgcgtccag
atgctgctctcggatcgcttcctgggcttcttcatggtcccagcccagggctcctggaac
tacaacttcatgggcgtgcgccacgacccaaacatgaagtacgagttgcagctggcaaac
cccaaggagttctaccatgaggtccatcgcccctcgcacttcctcaactttgccctcctg
caggaaggggaggtctactctgccgaccgcgaggatctctacgcctga
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integrated database retrieval system
