Sceloporus undulatus (fence lizard): 121917031
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Entry
121917031 CDS
T07740
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121917031 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sund03400
]
121917031 (LIG3)
Enzymes [BR:
sund01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121917031 (LIG3)
DNA repair and recombination proteins [BR:
sund03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
121917031 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
121917031
NCBI-ProteinID:
XP_042298572
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All DBs
Position
11:4590036..4602037
Genome browser
AA seq
911 aa
AA seq
DB search
MAEQRYCVDYAKRGTAGCKKCKEKILKGMVRIGKVVPNPFTESGGDMKEWYHVKCVFEKL
ERARATTKKIEDLTDLEGWEELQDPEREMINQHIADLSSKTVSTPKKKAAIQAKISPSGQ
ITSPKKTAAAVVPSDPSPKKFSGFAAKPGGSSEGGTGAGSSQKPSLSVQRSDPKHKDCLL
REFRKLCASVAEKPSYNVKTQIIQDFLQKGTSGDGFHGDLYLTVKLLLPGVIKSVYNLND
KQIVKLFSRIFNCSQEDMVRDLEQGDVSETVRIFFEQSRSCPPAAKSLLTIQEVDDFLTR
LSSLTKEDDQQNLLQEVASRCTANDLKCLIRLIKHDLKMNAGAKHVLDALDPNAYEAFKA
SRNLHDVVERVLKNQQESQKVPGLKKTLSVQATLMTPVQPMLAEACKSIEYAMKKCPNGM
YSEIKYDGERVQVHKKGEHFNYFSRSLKPVLPHKVAHFKDYIPKAFPGGHSMILDAEVLL
IDTKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIFFNDVSLMDRPLQERRKFLHDNMVE
IPNRILFSEMKHVTKALDLADMINRVIREGLEGLVLKDVKSIYEPGKRHWLKVKKDYLNE
GAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPDSQKWCTVTKCAGGHDDATLARLQK
ELDMVKISKDPSKIPSWLKINKNYYPDFIVPDPKEAPVWEITGAEFSKAEAHTADGISIR
FPRCTRIRDDKDWTTATTLPQLRELYQLSKAKSDFTVVAAEEDNSTAGSSGENEGQPKPS
APRPAPKPQAGKSPAKAKKPEAPKPAERSPLKKAEEKRGEKRKASKMEGEKKKPTLLDIF
TGVKLYLAPSVEDFRRIRRYFIAYDGDLVREFDGASATHIMGGAEESLAAQQVSPEWIWE
CIRKRRLVAPR
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcagcgctactgcgtggactacgccaagcgcggcacagcaggctgcaagaag
tgcaaggagaagatcctgaaggggatggtgcgcatcgggaaggtggtgcccaaccctttc
acggagtccggaggggacatgaaggagtggtaccacgtcaagtgcgtcttcgagaagctg
gagagggccagggccaccaccaagaagatcgaggacctgaccgacctggaaggatgggag
gaactgcaggaccccgagagggagatgatcaaccagcacatcgcagatctgtcctccaaa
actgtgagcacaccaaagaaaaaggctgccatccaggcaaagatttcgcccagcggtcaa
atcacttcccctaagaaaacggcggcggcggtggttccttcggatccctcgccaaagaaa
ttctcgggttttgcagccaaaccaggcggatcatctgaaggagggaccggcgccggatct
tcccagaagcccagtttatccgtccagcggagtgaccccaaacacaaggactgcctcctg
cgggagtttcggaagctctgcgcctcggtggctgagaagcccagctacaacgtcaagacc
cagatcatccaggacttcctgcagaaggggacctctggtgatggcttccatggggatctc
tacctgaccgtgaagctgctgctgccgggggtcatcaagagtgtttataacctgaacgac
aagcagatcgtcaagctcttcagccggattttcaactgcagccaagaggacatggtccga
gacctggaacagggagatgtttccgaaacggtgcggatcttctttgagcaaagcaggtcc
tgcccaccggctgctaagagcctcctgaccatccaagaggtggacgatttcctcacccgc
ctctccagcctgaccaaggaggatgaccagcaaaacttgctgcaggaagttgcaagcagg
tgtacggccaacgacttgaagtgcctcatccggctgatcaagcatgacttgaagatgaac
gctggtgcaaaacacgtactcgatgctttggacccgaacgcatatgaggcattcaaagca
tcgcgcaacctccatgatgtggtggaaagggtgctgaagaaccaacaggaatcccagaag
gtgccagggctgaagaagaccctcagtgtccaggcgacgctgatgacccccgtccaaccc
atgctggccgaagcctgcaagtcgatcgagtacgccatgaagaagtgtcccaacgggatg
tactcagagatcaagtacgacggggagcgggttcaagtgcacaagaaaggcgaacacttc
aactatttcagccgcagcctcaagccggtcctacctcacaaggtggcccatttcaaggac
tacatccccaaggcgttcccggggggtcacagcatgatcctggatgcggaggtcctcctg
attgacaccaagacggggaagccattgccttttgggactctcggggtgcataagaaagca
gccttccaggatgccaacgtctgcctctttgttttcgactgcatcttcttcaacgatgtc
agcctgatggacagacccttgcaggaacgccgcaagtttctccacgacaacatggtggaa
atccccaaccggattctcttctctgagatgaagcacgtcacgaaagcgttggacctcgct
gacatgatcaaccgagtcatccgagaagggctggaaggactggtactcaaagatgtgaag
agcatctacgaaccagggaagcggcactggctcaaagtgaagaaggattacctgaacgaa
ggcgcaatggccgacacagcagatctggtggtcttaggggctttctatggccaaggcagc
aaaggtggcatgatgtccatcttcctcatgggatgctatgatcccgacagccagaagtgg
tgtacggtgaccaaatgtgccggtgggcatgatgacgccactctcgcccggctgcagaag
gaactggacatggtgaagatcagcaaggaccccagtaaaatccccagctggctcaagatt
aataagaactactatccagactttattgttccagatccaaaggaagcgccagtctgggag
atcacaggcgctgagttctcaaaagctgaggcccacaccgccgatgggatctccatccgc
ttcccccgttgcacccggatccgggatgacaaggactggaccacggcgaccacactccct
caactccgagaactgtaccagctctccaaagccaagtcggacttcacggtcgtggcagcg
gaggaggacaactccacggccggcagcagcggggagaacgaggggcagccgaaaccttct
gccccgcgcccagctccaaagccacaggccggcaaatcacctgcaaaagccaagaagcct
gaagctcccaaaccagctgaaagatcccctttgaagaaagcagaggagaaacgaggagaa
aagaggaaagcctccaagatggagggagaaaagaagaagccgacgctgctggacattttc
accggggtgaagctctacctggccccttccgtggaggacttccggaggatcaggcgctat
ttcatcgcctacgacggagacctggtgagggaattcgacggggcgtcggcgacccacatc
atgggcggcgcggaggagagcctggccgctcaacaggtctccccagaatggatctgggaa
tgcattcggaagaggcggctggttgccccgcgttag
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