Sceloporus undulatus (fence lizard): 121917058
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Entry
121917058 CDS
T07740
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03030
DNA replication
sund03420
Nucleotide excision repair
sund03430
Mismatch repair
sund03440
Homologous recombination
sund03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121917058 (RPA1)
03420 Nucleotide excision repair
121917058 (RPA1)
03430 Mismatch repair
121917058 (RPA1)
03440 Homologous recombination
121917058 (RPA1)
03460 Fanconi anemia pathway
121917058 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sund03000
]
121917058 (RPA1)
03032 DNA replication proteins [BR:
sund03032
]
121917058 (RPA1)
03400 DNA repair and recombination proteins [BR:
sund03400
]
121917058 (RPA1)
Transcription factors [BR:
sund03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121917058 (RPA1)
DNA replication proteins [BR:
sund03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
121917058 (RPA1)
DNA repair and recombination proteins [BR:
sund03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
121917058 (RPA1)
MMR (mismatch excision repair)
121917058 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
121917058 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DUF8448
CpXC
CATSPERD-E_C
PHD_Pygo
Motif
Other DBs
NCBI-GeneID:
121917058
NCBI-ProteinID:
XP_042298618
LinkDB
All DBs
Position
11:5787725..5819578
Genome browser
AA seq
624 aa
AA seq
DB search
MALRLSEGAIAAIMKGDNSVKPVLQLINIRPISSSSGPPRYRMLMSDGVNTLSSCMLATQ
LNSMVDDKTLTANAICQINRFIMNTLKDGRRVMIMMDLTVLRAGDANAPKIGNPVQYVEG
AEQSVKPQQSPGLAANPAPSHPPQHQNSSPGAGVASPSGMAAKYGGLSKVPGKGPGHYFA
NTPEGSQTKVVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIR
ATAFNDQVDKYFPLIELNKVYYFSKGYLKVAKMQYTAVKNEYEIAFSHDTSVIPCEDAQH
LPSIQFDFVSVGDLESVSKDRLVDVIGICKSYGDATKITIRSSNREVFKRDMELMDMSGK
TVTVTLWGTEAEKFDGSQQPVVAIKGARVSDFGGRSLSVITSSTVIINPDRPEAFKLRGW
FDSEGQLLEATSISNARTGPAGDGNANWKTLHEVKTENLGQGDKADYFSCVGTVVYLRKE
NCMYQACPTPDCNKKVIDEQNGLYCCEKCNKQFPNFKYRMTLGVNIVDFQDNLWITCFQE
AAETILGQNAAYLGELRAKDEQAFGEVLDNATFTTYEFRIRIKLETFNDESRVKATVMDV
KPVNHKEQAKRLILTIRRNAELLG
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcgctccggctgagcgagggggccatcgcggccatcatgaaaggggacaactctgtg
aaacccgttctccagctcattaacatccgtcccatctctagcagcagtggtcctccgcgt
taccggatgctgatgagtgatggcgtgaacacgctttcctcttgcatgctggcaacacag
ctgaactccatggttgatgacaaaaccttgacagcaaacgcaatctgtcaaattaaccgc
ttcatcatgaacacccttaaagatggaaggagagtgatgattatgatggatttaactgtt
ctccgagctggcgatgccaacgcccctaagattggcaatccagtgcagtatgtggaagga
gctgagcaatccgtgaagccacagcagagccccggcctagcagccaacccagcaccaagc
cacccaccccagcaccagaacagcagcccaggagctggtgtcgcttcaccctcaggaatg
gcggcgaagtatggtggcctttccaaggttcctgggaaagggccaggccactactttgcg
aacaccccagagggctcccagaccaaagtggtgcccattgccagcttgaatccgtaccag
tccaagtggactatttgcgcccgggtgactcaaaaaggacagatccgaacatggagcaac
tcacgtggagaagggaagctgttctccatagagctggtggatgaaagtggtgagatccga
gcaacggcctttaatgaccaagtggacaagtatttccctctcattgagttgaacaaggtc
tattacttctccaaaggctacctgaaggtagccaaaatgcaatacacggccgtgaagaac
gagtacgagattgcattttcccacgacacctctgtcatcccctgtgaggacgctcagcac
ctccccagcatccagttcgactttgtttccgtcggcgacttggagagtgtcagcaaagac
cgtcttgtagatgtcattggcatctgcaagagctatggggatgctacaaagatcaccatc
aggtcctccaaccgggaagtcttcaagagggacatggaattgatggacatgtctggcaag
acagtgactgtcactctctggggaacggaagctgagaagtttgatggctctcagcagcct
gtggtggccatcaaaggagccagagtttcagattttggtggccggagcctctcggtcatt
acgtcgagcaccgtcatcataaaccctgatcgccccgaggccttcaagctccgcggatgg
tttgactcagaagggcagctcctggaggccacctccatatccaacgcccggactgggccc
gcaggagatgggaacgccaactggaaaactctgcacgaggttaaaaccgagaacctaggt
caaggagataaggctgattacttcagttgtgtgggcacagtggtctacttgcggaaggag
aactgtatgtaccaggcgtgcccaaccccggactgcaataagaaagtcattgatgagcag
aatgggctgtattgctgtgaaaaatgcaacaagcagttccccaacttcaagtaccgcatg
acccttggggtgaacattgttgacttccaagacaatctgtggatcacttgcttccaggag
gctgcggagaccatcctggggcagaacgcagcctatcttggagaactgagggcaaaggat
gaacaagccttcggcgaggtgctcgataatgccacgttcaccacctacgaatttcgcatc
aggatcaagctggagactttcaacgacgagtcacgcgtgaaggcaacagtcatggatgta
aagccggtcaaccacaaggagcaggccaagcgactgatcctgaccatcaggaggaacgct
gagctgctgggttga
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