Sceloporus undulatus (fence lizard): 121919299
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Entry
121919299 CDS
T07740
Symbol
COL4A2
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund04382
Cornified envelope formation
sund04510
Focal adhesion
sund04512
ECM-receptor interaction
sund04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121919299 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121919299 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121919299 (COL4A2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121919299 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sund04147
]
121919299 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
sund00536
]
121919299 (COL4A2)
Exosome [BR:
sund04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121919299 (COL4A2)
Glycosaminoglycan binding proteins [BR:
sund00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121919299 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121919299
NCBI-ProteinID:
XP_042301696
LinkDB
All DBs
Position
1:170444559..170669590
Genome browser
AA seq
1720 aa
AA seq
DB search
MGSSRHFHLGHWTGQTLPILVLLELTILLSGKVEAGGKSYTGPCAGRDCSGVCECLPEKG
SRGQPGLLGQQGPSGPPGLEGIPGLPGHKGDKGERGQPGITGPKGEVGQRGVTGFSGADG
VPGHPGQAGSRGKPGHNGCNGTTGDLGQQGSQGPGGLPGFFGMQGPKGQKGEPFVLTPEL
ARQFLGDPGDPGLMGFPGPVGARGPVGPFGLVGNPGPPGPPGAPGPPGPQGNKGIGFYGD
TGDKGDPGPPGPPGLPSTRELVISTDVISNEYKGVKGIKGIRGQPGIPGFYPYISEKGED
GVTGFPGPRGLPGINGLKGADGNVGFPGQDGISGTAGQKGMKGEPGDRGIQGPPSYALRP
RLIKGGRGDWGARGVPGPQGDRGEQGSPGRPGLQGSSDDASARRGLPGEMGPKGFIGDPG
FPAAYPGPPGLDGASGSPGFPGAPGPPGSSEYYFGQKGLPGLQGPAGRQGYPGPRGEKGV
KGEEGDCRCPEGIEGKRGPAGPPGPPGFPXSNGTAGGKRELGDQGPHGVPGYAGAKGFPG
APGPPGRQGQKGDARNITTKGTKGEQGTAGIPGPRGADGLPGRDGKDGIPGFPGLRGDGV
RGEPGDAGQPGPPGPKGFPGELGSPGIGLPGPKGYPGPPGDPGVYGSPGFPGPPGPPGAP
AEIDCGQTAQVIIDIRDNRTEPFQPGTGCIQAPKGVPGHPGLPGPRGAKGAKGIPGEFGL
PGSKGFLGLQGDRGLEGSPGPAGFSGPRGNKGAPGLPGEQGLPGSPGLQGLPGPQGAKGI
TGDRLGAPPGSPGNAGPPGFPGLKGQQGDQGIPGLRGSDGVPGPAGPKGYRGPSGSVGAT
GVPGPPGSFGFPGMPGQQGPMGRTGSQGYVGLPGDKGDPGDPGQPGPIGLKGVAGGKGDP
GFPGAKGKVGDPGHPGLDGMPGLPGVKGTKGSPGIGGFKGAMGFKGWPGWKGVRGESGLI
GLQGVQGLPGESGWKGDRGNRGSPGAPIKIMPGMLLEVKGEKGDEGESGIKGTLGLKGSK
GMLGFPGQTGRSGLPGFPGFAKGQKGDLGPKGVKGVSGYPGTPGTHGISGFPGITGRRGE
KGFPGIVGIPGERGQSGEIGNTGDTRNLPGTPGSKGDAGIPGSSGLKGAIGEKGEAGDPG
PFGSEGMKGLPGSPGLRGQGGFPGQTGERGSPGDPGIPGSSGEKGNSGQIGFPGEKGIPG
IRGIPGLDGLPGTKGFPGSPGPDGYGLPGFPGIWGDKGTVGEPSPVEGSRGPPGQKGERG
DPGTRGPPGALGPDGRPGLPGVSNISGTSGDEGSPGLNGVPGYPGPPGIPGLDAPPGTKG
EEGQIGVVGEDGQKGLRGDPGASGRPGIPGFPGARGYKGEQGVMGFVGLLGIPGETGPTG
PKGDRGATGFQGPPGSPGLPPILPKLVAEQGSPGAHGNRGPPGTLGEMGPQGPPGDPGFR
GPTGNPGLQGRGGMPASPGFRGDQGRPGLQGPGGFEGSAGEPGTPGVPGMPGRSINIGYL
LIKHSQSDQEPMCPVGMNKLWSGYSLLYFEGQETAHNQDLGLAGSCLARFSTMPFLYCNP
GDVCYYASRNDKSYWLSTTAPLPMMPVEEEEIRPYISRCSVCEAPAVAIAIHSQDMTIPH
CPEGWRSLWIGYSFVMHTAGGAEGGGQSLVSPGSCLEDFRSTPFIECNGAQGTCHYFANK
YSFWLTTIDRQFQPSPSSDTLKAGLIRTHISRCQVCMKNL
NT seq
5163 nt
NT seq
+upstream
nt +downstream
nt
atgggaagttcacgccatttccatttaggacactggactgggcagacattgccaattttg
gtactcctagaactgactatcttgctaagtggcaaagtggaagctggaggaaaatcctat
acaggaccatgtgcaggaagagactgcagtggagtatgtgaatgcctgccagaaaaaggt
tcccgtggccagccaggattgcttggacagcaaggaccctctggaccacctggcctcgaa
ggtatcccagggctaccaggtcacaaaggagacaaaggtgaaagaggccaaccaggaata
actggacccaagggagaagtgggacaaagaggggtcactggattttctggtgcagatggt
gttcctggccatccaggtcaagcaggatcgagagggaaaccaggccataatggctgcaat
gggaccacaggggatctgggtcagcagggaagccagggacctggaggcttgcctggtttc
tttggaatgcaaggacccaaaggtcagaagggggagccttttgtactgactccagaatta
gctagacaattcctgggagaccctggtgacccaggcttgatgggcttcccagggcctgtt
ggtgcccgtggtcctgtaggtccatttggtctggttggcaacccaggtcctcctgggcct
ccaggagcaccaggtcctccaggacctcaaggcaacaagggtattggcttttatggagat
acgggtgacaagggtgatcctggcccacctggtccccctgggcttccatcaacaagagag
ttggtcatttcaacggatgtaatttcaaacgaatacaagggtgtgaaaggaataaaagga
ataaggggacaacctggaattccgggtttctatccatatatttcagaaaagggagaagat
ggagtgacaggctttccaggaccaagaggtttgccaggaatcaatggcctcaaaggagct
gatggaaatgtgggtttcccaggacaggatggcatctccggtactgctggtcaaaaagga
atgaagggagaaccaggagaccggggtattcaaggaccaccaagttatgcgcttcgtccc
agactcataaaaggtggaagaggtgactggggagctagaggtgttcctggacctcaggga
gacaggggtgagcaagggagtcctggcagacccggcctgcaaggatcatctgatgatgcc
tccgcgagaagaggtttgcctggagaaatggggcccaaaggttttattggtgatccaggt
ttcccagctgcttatcctggccctccaggtttagatggtgcttccggatcccctggattc
cctggggcacctggccctccaggaagttcagagtattattttgggcagaaaggactcccc
ggacttcaaggtcctgcaggcagacaaggttacccagggccacgaggagaaaagggagtg
aaaggtgaggaaggagactgtagatgtcctgaaggtatagagggaaagagaggccctgct
ggaccaccaggtccaccaggatttccanngtccaatgggacagcagggggaaaaagagaa
ctgggagatcaaggcccacatggggttcctggctatgctggtgcaaagggatttccgggt
gcacctggacctcctgggcgacaagggcaaaaaggagatgcccgaaacattacaacaaaa
ggtaccaaaggagaacaaggaactgcagggattcctggacctagaggagcagatggttta
ccaggcagagatggtaaagatggtataccaggatttcctggccttcgaggcgatggtgta
agaggtgaacccggggatgctggtcaaccaggcccaccaggcccgaagggttttccaggt
gaacttggctcgcctggtattggtttgccaggtccaaaaggatatcctggccctccaggc
gatcctggggtgtatggtagtcctggatttccaggccctccaggtcctcctggtgctcct
gctgaaatagactgtggacaaacagcacaagttatcatagatatcagagacaatagaact
gaaccatttcaaccagggactggctgtattcaagctccaaaaggagttccagggcatcca
ggtcttccaggaccaagaggtgcaaaaggtgcaaaaggaattccaggtgaatttggcctg
ccaggatcaaaaggatttctaggccttcaaggggatcgaggtcttgaaggttcacctggc
ccagcaggatttagtggaccccgaggaaacaaaggtgcaccagggttgcctggagagcag
ggccttccaggcagtcctggcttgcaaggcctgccaggtcctcaaggtgcaaaaggaatt
acaggtgatagactaggagcgccaccaggctctccagggaatgccggaccacctgggttc
ccaggactgaaaggccagcaaggagaccaaggcataccgggactcagaggaagtgatggt
gttcctggccctgctggacccaaaggataccgtggcccttcaggatctgttggcgcgact
ggtgtgccaggaccaccaggatcatttgggttccctggaatgccaggccagcaaggaccc
atgggcagaacaggatctcaaggatatgttggcttacctggtgacaaaggggatccagga
gatccgggacaacctggtcccataggcctgaaaggtgtggcaggtggcaaaggtgaccca
ggtttccctggagctaaaggcaaggttggtgatcctggtcatcctgggttggatggaatg
cctggcctcccaggtgtgaaaggtactaaaggctctcctggaattggcggtttcaaaggt
gctatgggcttcaaggggtggccaggatggaagggagtccgaggagagagtggcctcatt
ggacttcaaggtgttcaaggtctgcctggtgaatcaggatggaaaggtgaccgtgggaac
cgtggttcacctggagcacccattaaaatcatgcctggcatgctgttagaagtgaaaggt
gaaaaaggagatgaaggtgaaagtggtatcaaagggacccttggccttaaaggaagtaaa
ggcatgctgggctttcctggccagacaggaaggtcgggtttacctggatttccaggtttt
gcaaaaggtcagaaaggagaccttggacctaaaggggtaaaaggtgtttcaggttatcct
gggaccccaggaactcatggcatctctggcttccctggaatcacaggacgaaggggagaa
aagggctttccggggattgttggtatacctggtgaaagaggccagtctggggaaattggc
aatacaggagatactagaaatctgccaggaacaccgggttctaaaggggatgctggtata
cctggatccagtggcttgaaaggagccatcggtgaaaaaggtgaagctggtgatccaggt
ccttttggcagtgagggtatgaagggcttgccaggctcccctggtttaagagggcaagga
ggattcccagggcagactggggaacgaggctcaccaggagacccaggtattcctggatca
tcaggtgaaaagggaaattctgggcagattgggttcccaggagaaaaaggtattcctggc
atcagaggaatccctggattagatggtttaccaggtactaaaggcttcccaggatcacca
ggaccagatggatatggcctcccaggtttcccaggcatttggggtgacaaaggtacagtt
ggagaaccaagccctgttgagggtagtagaggacctccaggtcagaaaggagaaagagga
gatccaggaactcgaggcccacctggtgctcttggacctgatggaaggccaggccttcct
ggtgtttccaatatatcaggaacatctggtgatgagggatctccaggcttgaatggagta
ccaggctacccaggcccaccagggatacctgggctagatgctccacctgggaccaaagga
gaagaaggacaaataggtgtggttggagaagatggtcaaaagggacttagaggagatcca
ggtgcatctggaagacctggaataccaggttttcctggagcaagagggtataaaggtgaa
caaggagtcatgggctttgttggtctactgggaattcctggtgaaactggccccactggg
cccaaaggagacagaggggctactggatttcagggacctccaggttctcctggactgcct
cctatcctccctaaactggtggctgagcaagggtcaccaggggcccatggaaacagaggg
cctccaggcactttgggtgaaatgggtcctcaaggtccaccaggagatccaggatttaga
ggcccaacaggtaatccaggactgcaaggaagaggaggaatgccagcatctccaggcttc
agaggtgatcaagggcgaccaggactgcaaggcccagggggctttgaaggttctgcaggt
gaaccaggtactcctggggtgccaggtatgccaggacgcagtattaacataggatatctt
ctgataaagcatagccaatctgatcaagaacccatgtgccctgttggtatgaacaaattg
tggagtggctacagcttgctgtattttgaagggcaagaaacagcacataaccaggacctg
ggtctggctgggtcatgtttggctcgattcagcactatgcctttcctctattgcaatcct
ggtgacgtctgttactatgcaagtcgcaatgacaaatcctactggctctcaactacagcc
cctcttccaatgatgcctgtggaagaagaagagatcaggccttacatcagccgttgctca
gtatgtgaagctccagccgttgcgatagctattcacagccaggatatgactattccacac
tgccctgaaggatggcggagtttatggattggttactccttcgtcatgcatactgcaggt
ggtgctgaaggtgggggccagtcccttgtttctccagggagctgtctagaagacttcaga
tcaacaccattcattgaatgcaacggtgctcaggggacctgtcactattttgccaataaa
tacagtttttggcttactaccattgaccgtcagtttcagccatcaccatcatcagataca
ctcaaggctggacttatccgaacacacataagcagatgccaagtctgtatgaagaatttg
taa
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