Sceloporus undulatus (fence lizard): 121919300
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Entry
121919300 CDS
T07740
Symbol
COL4A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund04382
Cornified envelope formation
sund04510
Focal adhesion
sund04512
ECM-receptor interaction
sund04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121919300 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121919300 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121919300 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121919300 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sund04147
]
121919300 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
sund00536
]
121919300 (COL4A1)
Exosome [BR:
sund04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121919300 (COL4A1)
Glycosaminoglycan binding proteins [BR:
sund00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121919300 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121919300
NCBI-ProteinID:
XP_042301697
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All DBs
Position
1:complement(170237038..170444558)
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AA seq
1677 aa
AA seq
DB search
MAAALPLAAFLLLLLFFLLESPRTAQAAAACSGCGKCDCSGVKGQKGERGLPGLQGLVGF
PGVQGPEGPPGSPGLKGDTGEPGLPGTKGTRGPPGHAGYPGNPGLPGIPGGDGPPGPPGI
PGCNGTKGERGPVGPPGLPGLPGNLGPPGLPGIKGDPGEFIGLTPDGVLKGEKGFHGQPG
SPGLPGLPGAEGPIGPSGPPGRPGPPGPPGPPGPKGHMGLGFQGPKGDKGERGVMGPPGP
QGAAPVEGEKGTVIIRGEKGDPGEKGDPGLPGSPGLVIKGEKGEPGKPGARGRPGKDGED
GEKGRSGDPGQPGFPGLPGAYGPKGDKGVTGLPGLPGIVIGTEEEEVYGEKGDPGPPGFA
GPKGEPGPKGFPGVPGTPGPPGQPSPGITGAPGFPGERGEKGDQGPPGLPLYGPKGRNGP
PGPRGFPGPPGPPGITDGILECQPGEPGDPGSPGLPGQHGFSGERGEKGEKGELCFACDA
AGLPGSPGPQGNPGEPGIPGPPGAKGDRGRPGFDGIPGVVGPPGLPGLIGNPGAKGEPGD
VFLDSDLKGEKGATGFPGTPGFPGRDGNPGRDGLPGAPGPKGASGTIGLKGDRGPPGTSG
FPGARGEKGFPGPPGVGPSGPPGDKGDTGISGFPGTPGSPGPKGEAGRAIPLPGAPGADG
IPGAPGFPGIQGDKGDPGITGRPGPPGEKGLTGPPGIGFPGLPGPPGFPGQTGAPGLPGG
KGDTGPQGLPGTPGLQGQKGEPGLGLPGPKGFPGAKGQDGFPGAKGDQGYPGQPGEKGFP
GVPGQPGSQGEPGPAGLPGVQGSPGVPGIGPPGPPGPPGPTGPPGSIGVSGIKGERGYPG
IPGLDMPGPKGDKGSQGPTGLPGLQGIPGVPGSQGREGKPGIPGTKGEMGVMGTPGIQGP
PGPIGSPGLPGEKGDIGFPGVAGQRGNPGLKGEKGEVGLPGEPGSMDHVDMENMKGQKGD
QGSKGQPGPSGEKGTQGDPGIPGMPGKDGDPGLPGEAGPKGDAGLPGYQGEPGPPGQKGS
SGEMGLPGQSGEKGVQGLPGEAGRPGFPGEKGVKGEKGQPGFPGIGFPGAPGEKGEPGWT
GSPGVPGEKGEKGALGITGFPGAPGAKGQPGLPGSPGVPGIPGERGEKGTPGLHGFPGLK
GQTGDPGPSGPPGISGEKGEPGYDGIPGSSGPKGEPGIPGRGLPGLPGAKGERGAKGDVG
FPGAAGSPGIPGVKGEPGFAGPQGPPGQAGLPGLPGRIGEGPKGDRGPQGRPGLQGPPGP
QGSSGAPGLSGAKGEKGSAGWPGPPGRPGLKGDPGAQGIPGNVGFPGAAGQKGDIGTPGI
PGPQGPRGPPGVPGLKGEQGDQGFPGAKGFPGPPGPPGPFQLLKGEPGLPGLQGPPGAKG
SSGPPGPKGQQGVTGPFGLNGSPGLPGFDGTPGQKGETGPVGPPGPRGLPGPPGPEGVPG
SMGPPGSPSVAHGFLVTRHSQTIEEPPCPSGTRLMFNGYSLLYIQGNERAHGQDLGTAGS
CLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGESIKPFISRCAVCE
APAMVMAVHSQTIQIPPCPEGWRSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAP
FIECHGKGTCNYYANAYSFWLATIERNEMFKKPTPSTLKAGELRSNVSRCQVCMRRT
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgcgctgcccctggctgccttcctcctcctcctcctcttcttcctcctggag
agccccaggacggcccaggcggcggcggcttgttctggctgtggaaaatgtgactgcagt
ggagtaaagggccaaaaaggtgagagaggtttgccaggtttacaaggtttggttggtttt
cctggagtacaaggaccggaagggcccccagggtccccaggactgaagggtgatactgga
gaaccgggactaccaggaacaaaagggacaagaggtccacctggtcatgcaggctaccca
ggaaatcctggccttcctggcatccctggaggagacggccccccaggtcctcctggcatc
ccaggatgcaatggaacaaagggtgaaagaggtccagttggccctccaggtttacctggt
ttacctggaaatctagggcctccaggacttccaggaataaagggagatccaggtgaattt
attggactcacaccagatggtgtactaaaaggtgaaaaaggatttcatggccaacctgga
tcaccaggattacctggtttaccaggtgctgaaggccctattggaccatctggacctcct
ggaagaccaggtcctccaggaccacctggtcccccaggtccaaagggtcacatgggcttg
ggtttccagggaccaaaaggtgataagggtgaacggggagtcatgggtcctcctggtccc
caaggagctgctccagtagaaggagagaaagggactgtaatcatccgtggagagaaaggc
gatcctggtgaaaagggtgaccctggccttccaggatcaccaggactagttatcaaaggc
gagaaaggtgaacctgggaaacctggtgcacggggaagacctgggaaggatggagaggat
ggagagaagggaagaagtggagaccctggccaaccaggatttccaggattacccggagca
tatggccctaaaggagataagggtgtaacaggtctaccaggacttccaggaatagttata
ggtacagaggaagaagaagtgtatggtgaaaagggagacccaggtcctccaggattcgca
ggaccaaaaggtgaaccaggtccaaaaggttttcctggagtgccgggaacaccgggtcct
ccagggcaacccagtccagggataacaggagcacctggttttcctggggaaagaggagaa
aaaggtgaccaaggcccccctggacttcctctatatgggccaaaagggagaaatggacct
ccaggacctcgtggcttcccagggcctccaggcccacctggcataacagatggaattctg
gagtgccagcctggtgagcctggtgacccaggctcaccaggactccctggtcaacatggc
ttctcaggagaaagaggagaaaaaggtgaaaaaggtgaactctgttttgcctgtgatgca
gctggccttcctggatctccaggccctcaggggaatccaggggaaccaggtattccagga
cctccaggtgctaaaggcgacagaggtcgtcctggatttgatggcattccaggagtggta
ggaccaccaggtttgcctggattgattggaaatccaggagcaaaaggagaacctggagac
gtcttccttgactctgatttaaaaggagaaaaaggagctactggcttccctggaactcca
ggcttccctgggagagacggaaatccggggcgtgatggtttgccaggtgctccaggacct
aaaggtgcatcgggaaccattgggctgaaaggagaccgtggccccccagggacaagtggt
ttcccaggagctcgtggggagaaaggctttcctggtccgccaggagttgggccttctgga
ccacctggtgataaaggggacacaggaatttcagggttccctggcactcctggaagtcca
ggacctaaaggtgaagctggccgagccattcctttgcctggtgccccaggggcagatggt
atacctggtgctcctggatttccaggcatccaaggtgacaagggagatccaggcattaca
ggaaggcctggcccaccaggtgaaaaaggcctgacaggaccaccaggaatagggtttcct
ggccttccgggacctccaggtttcccaggacagacaggtgcaccaggtttacctggaggg
aaaggagatactggtccccaaggattaccaggtacaccaggactacaaggccaaaaaggt
gaaccaggacttggtctcccaggccccaaaggttttcctggtgcaaaagggcaagatggg
tttcctggagcaaaaggtgatcaagggtatcctggtcaacctggagaaaaaggatttcca
ggtgtacctggccagccaggatcccaaggtgagcctggtcctgctggattaccaggtgta
cagggctcccccggtgtgccaggaataggacctcctgggccccctgggcccccaggccca
actggccctccaggatcaataggagtgtcaggaataaaaggagaaaggggctacccaggt
atccctggactagatatgccagggccaaaaggagataagggtagccaaggaccaacaggg
ctgccagggctgcaagggataccaggggtacctggctcacaaggacgagaagggaaacca
ggcattccaggaaccaaaggtgaaatgggagttatgggaacccctggaattcagggtcct
cctggccctataggatcacctggacttccaggtgaaaaaggtgacataggctttccggga
gtagctggacaaagaggtaaccctggtttaaaaggcgaaaagggtgaagttggtctacca
ggggagccaggatcaatggatcatgtagacatggaaaacatgaaaggccaaaaaggagac
caaggcagtaaagggcaacctggaccaagtggagagaaaggaactcaaggggatcctggc
ataccaggaatgccaggcaaggatggagatcctggcttacctggcgaagcagggccaaaa
ggggacgcaggccttccaggataccagggtgaacctgggcctcctggacaaaagggatct
tcaggagaaatgggtctgccagggcaatcaggagaaaagggtgtgcagggtcttccaggt
gaagctggtagaccagggtttcctggagaaaaaggtgtgaaaggggagaaaggacaacct
ggattcccaggaattggcttccctggggctcctggtgagaagggagagccaggatggaca
ggtagcccaggtgtacctggggaaaaaggtgaaaagggtgctctaggaattacaggattc
cctggggcaccaggtgccaaagggcagccaggtcttccaggttctccaggtgttcccgga
atcccaggtgaaagaggggaaaaaggaaccccaggtttgcatggttttccgggcttaaaa
ggacaaacaggtgatcctggaccctctggcccaccaggtatttctggagaaaagggtgag
ccaggttatgatggaatcccaggctcatctggtccaaagggtgagccaggtattccaggt
agaggacttccgggacttccaggagccaagggagaaagaggtgcaaaaggagatgtgggt
ttcccgggagctgcaggaagtccagggattcctggtgtaaaaggagaaccaggatttgcc
ggcccacagggtcccccaggccaagcaggacttcctggattaccaggcagaattggagag
ggaccaaagggtgaccggggacctcaaggtcgaccaggccttcaagggcctcctggtcct
caaggatcttctggggctccagggctatcaggggcaaaaggagaaaaaggaagtgcaggt
tggccagggccacctgggagacctggactgaaaggagacccgggagctcaaggaatccct
ggcaatgttggcttccctggagctgctggtcaaaaaggtgacattggaactcctggaata
ccaggccctcaaggtccaagaggtcctccaggagtccctggactcaaaggagaacaaggt
gatcaaggctttcctggagcaaaaggcttcccaggcccacctggtcctccaggccctttc
caacttctgaaaggtgaaccaggcttacctggtctgcaaggcccacctggcgctaaagga
tcctctggtcctccaggaccaaaaggacaacaaggtgtgacaggcccttttggtttaaat
ggttccccaggacttccaggatttgatggaacacctggtcagaaaggagaaactggccct
gttggcccaccaggtccaagaggcctacccggtccacccggtcctgaaggtgtgccaggg
tctatgggtccaccaggcagtccctctgtagctcatggcttccttgtgacccgacacagc
caaaccattgaagagccaccatgtccttctggaacgagactaatgttcaatggatattct
ttgctttatatacaaggaaatgaacgggcccatggccaggacttgggtacagcaggaagt
tgtctgcgtaaattcagcacaatgcctttcctgttttgtaacattaacaatgtttgcaat
tttgcctcaagaaatgattattcttactggttgtctacccctgagccaatgccaatgagc
atggctcccattacaggagaaagcatcaagccttttatcagtagatgtgctgtgtgtgaa
gctcctgctatggtgatggcagttcacagtcaaactattcaaattccaccatgtccagaa
ggctggagatctctttggataggctattcctttgtgatgcataccagtgctggtgcagaa
ggatcagggcaagccctggcctctcctggttcctgtcttgaagagttccgcagtgctcca
ttcattgaatgccatggcaaaggcacctgcaattattatgccaatgcttatagtttctgg
ctggccactattgagagaaatgaaatgttcaaaaaacctactccttccacgctgaaagca
ggggaactacgctcaaatgttagccgttgccaagtctgtatgagaagaacataa
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