Sceloporus undulatus (fence lizard): 121920239
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Entry
121920239 CDS
T07740
Symbol
DHX16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121920239 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sund03041
]
121920239 (DHX16)
Enzymes [BR:
sund01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121920239 (DHX16)
Spliceosome [BR:
sund03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121920239 (DHX16)
Complex C
U4/U6.U5 tri-SnRNP related factors
121920239 (DHX16)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
PWI
Flavi_DEAD
SecA_DEAD
nSTAND3
Motif
Other DBs
NCBI-GeneID:
121920239
NCBI-ProteinID:
XP_042303260
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All DBs
Position
2:complement(19795021..19820867)
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AA seq
1064 aa
AA seq
DB search
MASGELERWVSGQLHSLLGLSERHVVAFMVGLATRSRTPEELLARLEETETLRVTEPSAR
AFAQQLWEKVPHQAPRERPARLAEQEALAMQQKNRSYTLLEDSDEEQPGGAAAAAQGSKR
QRPPRGPEGKQRKRHKHLRQRQEEEEEDGKDSDERSSAGDGRRKQAPATMKEEEEEDEWD
RSERERLQDLEERDAFAERIKRKDKEKTRNILERSDKKAYEEAQKRLKMAEEDKKLMIPE
LRKQSRREYLAKREKDKIEDLEAEIADEEYLFSEQELTALERQELEYKRKVRDLAKQYKQ
AGEQEKLEKSNRYYMPEESRSKKIPDRYEEPQTEDHMAPRDEQRRWEEDHIGAAALRFGA
RDAGQRHPHKDYEYVLEDDEMIQFVNAVQMRGTVQNKSQEEKPELSEAERKKLSIQEVRR
SLPIFPYREDLLAAIAEHQILIIEGETGSGKTTQIPQYLCEEGYTEKGMKIGCTQPRRVA
AMSVAARVSQEMGVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLSSYSVV
IIDEAHERTLHTDILFGLIKDIARFRPELKVLIASATLDTERFSTFFDDAPIFRIPGRRF
PVDIFYTKAPEADYLEACVVSVLQIHVTQPRGDILVFLTGQEEIEACCEMLQDRCRRLGS
KIAELLVLPIYANLPSDMQAKIFEPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQ
KSYNARTGMESLIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAYKNEMEETTVPEIQR
TNLGNVVLLLKSLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRKMAE
LPVDPMLSKMILASEQYKCSEQILTIAAMLSVNNAIFYRPKDKVVHADNARMNFFLPGGD
HLVLLNVYSQWVECGYSMQWCYENFIQFRSMRRARDVREQLEGLMERIEVDITSSEGDYI
PVRKAITAGFFYHTARLTRSGYKTVKHQQTVFVHPNSSLFEEQPRWLIYHELVFTTKEFM
RQVIEIDSTWLLEVAPHYYKAKELEDASTKKLPKKVGKTREELG
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgggggagctggagcgctgggtctccgggcagctgcactctttgctgggcctg
agcgagcggcacgtggtggccttcatggtgggcctggccacgcgcagcaggacgcccgag
gagctcctggcccgcctcgaggagaccgagaccctccgcgtcaccgagccctccgcccgg
gccttcgcccagcagctctgggaaaaggttccccaccaggccccgcgggaacgcccagcc
aggctggcagagcaggaggccttggccatgcagcagaagaaccgttcctacactctgctg
gaggacagtgatgaggaacagcctggtggggcagcggcggcagcccagggttccaagcgc
cagcgtcccccacgaggccctgaaggcaaacagcggaagcggcacaaacacctgaggcag
cgccaggaggaggaggaggaggacggtaaagactccgatgagaggagcagcgcaggcgat
gggagacggaaacaggccccagccaccatgaaggaggaggaggaagaggacgaatgggat
cggagtgagcgagagcgattgcaggacttggaagagcgggatgccttcgcggagcgcatc
aagcgcaaagacaaggagaagacacgcaacatcctggagcgttcagacaaaaaggcctat
gaagaagctcagaagcgtctgaagatggcagaagaggacaagaaattaatgatcccagag
ttacgtaagcagtctcgccgagagtatttggccaaacgggaaaaagacaagatagaagac
ttggaagcggagatagcagatgaggaatatctgttctctgagcaggagctcacagccttg
gagcgacaggagctggaatacaaacgtaaagtgcgtgacttggcaaagcagtacaagcaa
gctggagagcaggagaagctggagaagagcaatcgctactatatgcctgaggaaagtcgc
agcaagaaaatcccagatcgttatgaggaaccccaaacagaggatcacatggccccacgc
gatgagcagcgacgttgggaagaagaccacataggagcagctgctctccgttttggggct
cgggatgctggtcagcgccatcctcacaaagattatgagtatgtccttgaggatgatgag
atgatccagtttgtgaatgctgtgcagatgcgagggacagttcaaaacaagtcccaggag
gagaagccagagttgtcagaggctgagcgcaagaagctgtccatccaggaggtgcgccgg
agcctgcccatctttccctaccgtgaagacctgcttgctgccattgccgaacatcagata
ctcataattgaaggggagaccggctctggcaagaccactcagattccccagtacttatgt
gaagagggctacacagaaaaaggaatgaagattggctgcacccagcccaggcgagtggcg
gctatgagtgtggctgcccgtgtttcccaggaaatgggtgtcaagcttggaaatgaagtg
ggctatagcatccgttttgaggactgcacctctgagcggacggtgctgaagtacatgact
gatgggatgctgctaagggaattcctgactgaacctgacctgagcagctacagtgtcgtc
atcattgatgaggctcacgagcgcactttgcacacagacatcctctttgggctgatcaag
gacattgctcgcttccggcctgagctgaaagtgctgattgccagtgcaaccctggacaca
gagcgcttctctactttctttgacgatgctcccatcttccgcattcctgggcgcaggttc
cctgttgacatcttctataccaaggccccagaggctgactacctggaggcatgcgtggtg
tcagtgcttcagatccatgttactcagccccgaggtgatatccttgtattcctcactggc
caggaagaaatcgaggcatgctgcgagatgttgcaggatcgctgccgtcgcttgggatcc
aaaatagcagaactgctagtcctcccaatctatgccaacctcccctctgacatgcaggcc
aagatttttgagccaactccaccaggagccaggaaggttgttgtggccacaaacattgca
gagacatctctgaccatagatggcatcatctacgtgattgatcctggtttttgcaagcag
aagagctacaacgctcgcacaggcatggagtcactcattgttactccttgctctcgggct
tctgctaaccagcgagcaggaagagctggccgggtggctgcagggaaatgcttccgtctc
tacacagcctgggcctacaagaatgagatggaagaaaccacagtgccagagattcagcgg
accaacttgggcaatgtggtactgcttctgaagagcttgggcatcaatgatctgatccat
ttcgacttcatggacccaccaccccacgagactttggtactggcactagaacagctttat
gccctgggggccctcaatcatcttggcgagcttaccaagctgggccggaagatggcggag
cttcctgtggatcccatgctgtccaagatgatcctggcttcagaacagtacaagtgttca
gagcagatcctcactatcgctgccatgctttcagtcaacaatgccattttctatcggccc
aaggacaaagtagtccatgcagacaatgcccgcatgaatttcttcctgcctggtggagac
caccttgttcttctcaatgtttacagtcagtgggtggagtgtggttactccatgcagtgg
tgctatgagaacttcatccagttccgctccatgagacgagccagggatgtgcgagaacag
ctggaagggttaatggaacgcattgaagtggacataacttccagtgagggagactacatc
ccagtccgtaaggccattactgcgggtttcttctatcacacagctcgcctaacccgcagc
ggttacaagacagtcaagcaccaacaaacagtgtttgtccatccaaacagttcccttttt
gaagaacaaccacgctggctcatctatcatgaattggtctttacaactaaagaattcatg
agacaggtcatagaaattgacagcacatggctcctggaggtggcccctcactactacaag
gccaaggaattagaagatgcttctaccaagaaacttcccaagaaagtagggaaaacacga
gaggagcttggataa
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integrated database retrieval system
