Sceloporus undulatus (fence lizard): 121920522
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Entry
121920522 CDS
T07740
Symbol
FOCAD
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
sund
Sceloporus undulatus (fence lizard)
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sund03019
]
121920522 (FOCAD)
Messenger RNA biogenesis [BR:
sund03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121920522 (FOCAD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
PH0730-like_N
Motif
Other DBs
NCBI-GeneID:
121920522
NCBI-ProteinID:
XP_042303593
LinkDB
All DBs
Position
2:199080196..199228411
Genome browser
AA seq
1692 aa
AA seq
DB search
MKVNRKQSGRWTLLELYAIRNSPHPLITVLENRPDCWPILLQHLTTFFQHCPDSTENSCV
SIMRPFLRYLYCEPCQLREHAELRMALLRVLLQPHEPGSKEEPTALECHLLQLFCDLVPH
RQVKDLPQVTETLLFLQELFQSLLRYPNVWKIQLCQLSLQLLCFCEVSLQSTGECSSLIC
LMEENVELLKEDFPFEMAIIGLGFLLLQAPANQQKPILKLAIKILSCSETKKTQTAALIL
VMPALQILSSTAVQDYITEDSGGTTRQQLAINLLEIVQQEEMNEKNQPACSDRFFPITSA
YGSLHTTWKILELLRERSSTFDWLSSVKSMLPITTDVPVHVFLLLAYLLVQENGESLRDV
LATTTEIAKADSSQVPNLIPVLMFKLGKPLESVLCRDILYTLPALGVHKVCVAQILRALQ
VLGSTPKLQAVTLRLMTSLWEKQDRVYPELQRFMAMSDMASLSVSKDTQWEKVIAKAASI
RDICKQRPYQHGADMLAAISQVLNECTKPDQATPAVLVLQGLHALCQAEVVCIRSTWNAL
STKLSCDTRPLILKTLSELFSLVPSLMVNSNEYEKFKAQVVSFLWNHTQNKDPVVATAAY
KSLSEFGSEEHTILHLPEQARPEKDQQEEEDINEEEGEEEEIDLSVPGASYIKLLLLTSS
PVLPAFEEFSASLVKQEMANMPRGIYHSALRGSAVRSDQGKTVSGVPNFMLKMYERNKQP
GLRPGLAGGMLLSYDLPIHMGKDGKPISRFLASRGRNFHQMLTALLHEVNIQPSEWHRSL
LLPQSWAGFMERTYHAILQGRQAELEMQLKHGKEGPEEVQYKQFTAWLWVRDMLTDVIKG
ASKESPVVKGNCLLALTGLAVVVAKHEKGLSSDMEKQFDTEPDFLLTKHWISMVIDTLLS
IVDSHYRPKGQVFPWFYQKSYSGENTASAIARSCAATALSLLVPVFIVSYKEKVEEVLNL
LIALLPGKPNADESQAVQIHMGLALGMFVSRLCKEKVSDISDKQTNPLMMKSLNALEDCC
FDTSLEYNTGCILGVGLVLSLMCHSNLTDSQDYISGTLRKLCKYLDDAEDQSRTFQEILA
YAISCVSISTFSVKIIEAVEAEEIMNKLQKLTEANQQTAGFALALGNVVHGLSVSGHGKA
EDLGNRLFPAWMKIVLAEGAPTMQRLAAVNGLVSVVGSERAMLQLKTEAIQSSQFQSKLN
EVIRTLSQIISFSGVIGLQTNSAWLLGHLHLSTVSATHSQTSVPPDFSYLPEKSFLRAAT
DFMIEAGKKGPEQVLPNLVKAAMVPIALTGESYQYPPVNWASVLSPLLRLDFGDEIQQLC
IKLAVTQAQSSQNAAMLLGMWVAPPLVYSLSIQAKRYLFTSLPVWVKYVAEDKLQAFTEV
FMVQHFEVKNQPKDLELCWNILQGLHQAMKLPSPAQYSWSCLCRAAERIFELLPNEIRQN
EVKMYIESAKCFSEMTDTEVDRIAQASKNNLEKVTFVKVYLVSQGRFPLLRWSDVISTAA
GYQQKETIVWMLLHSFYHARIVIHENTGVLKRMEWLLELMGFIRNVSLKMTSIPNVAPGE
AVSFCLWIFASAVVAWADHAAPLLLGLSANWSPWESEAASRLSPNYLGKRPVDRLAIQET
LTLLPGSLQTLLAKEPWKEQTQKFIDWQFSIMEASSEVLSHAYRDLLKASLLTLRSLPEF
KKKATWTKAYGW
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtaaataggaaacagagtgggagatggacactattggagctctatgcaatcagg
aactcccctcatcccctgattactgttcttgaaaacagacctgactgctggcccattctt
ctgcagcacttgacaacatttttccaacattgcccagacagcacagaaaattcctgtgtt
tctataatgaggccatttctaaggtacctctactgtgagccttgccagctgcgagaacat
gctgaattacggatggccctacttcgagtcttgcttcagccacatgagcctgggagcaaa
gaagaacccactgccctcgagtgccacctccttcagctgttttgtgacttggttccacat
cgtcaggtaaaagatctgccacaggtcacagagacactgctttttctgcaagagttattc
cagagtctgctacgctaccctaatgtttggaaaatacagttatgccagctctccctgcaa
cttctgtgcttctgtgaggtttccctgcagagcacaggggaatgttcatctttaatttgc
ttaatggaagaaaatgtggagcttctgaaagaggactttccatttgaaatggccataatt
ggattaggcttccttctgttgcaggctccagccaatcaacaaaagccaatcttaaaacta
gccatcaagatcctttcctgttctgaaaccaagaagactcagacagcagcccttatcttg
gtgatgcctgcactgcagatcttatcatccacagcggtacaggactacataactgaggac
agtggaggcactacaagacagcagttggccattaatcttctagaaattgtacagcaggaa
gaaatgaacgagaaaaaccaaccagcttgttctgatcgcttcttccccataaccagtgct
tatggttcattgcacactacttggaagatccttgagcttctgagagaaaggtcttctaca
tttgattggttatcttctgtgaagtcgatgctgcctattacaactgatgtccctgtccat
gttttccttctgctggcctatctccttgttcaagaaaatggagagagccttcgtgatgta
ctggctactactactgaaattgccaaagcagattcatcccaggtgccaaacctgattcca
gtcctgatgtttaagctgggaaaaccactggagtctgtactgtgccgggatatcttgtat
accttgcctgctttgggtgtgcacaaggtttgtgtggcgcagattttacgtgcactgcag
gtgttgggaagcacgccaaagcttcaagctgttacgttacgactgatgacatctttatgg
gagaaacaggatcgagtttatccagagctgcagagattcatggcaatgtctgatatggcg
tctctgtctgtcagcaaagatactcagtgggaaaaagtgattgccaaagcagcctctatc
agagacatatgcaagcaaagaccataccaacatggagcagatatgttggctgcaatttct
caagtactgaatgagtgcacaaaacctgaccaagccacaccagctgtcttagtcttacaa
ggacttcatgcactttgtcaagctgaggttgtttgcattcgctctacatggaatgcactc
tcaacaaagttgagttgcgacactcggccactcattttaaaaacactgagcgaactgttt
tcccttgttccatcattaatggtgaattcaaatgagtatgagaaatttaaagctcaagtt
gttagcttcctgtggaaccatacacagaacaaggatcctgttgtagccactgctgcatac
aaatctctgtctgaatttggttcagaagaacataccatccttcatcttcctgaacaggca
aggccagaaaaggaccaacaggaagaggaagacataaatgaagaggaaggtgaagaagaa
gaaatagatctctctgttcctggtgcctcatatatcaaactattattgctcacctcttct
cctgttttgccagcatttgaagagttttccgcatcactggtgaaacaggagatggccaac
atgccccgtggaatataccattctgcgctccgtggaagtgctgtgcgatcagaccaaggg
aagactgtgtcgggtgttccaaactttatgctaaaaatgtatgagaggaataagcagcca
gggctgaggcctggccttgcaggtggcatgttactgagttatgatcttccaatccacatg
ggcaaggatggcaagcctatcagtcgattcctagctagtaggggacgcaatttccaccaa
atgttaacagctctccttcatgaggtaaacattcagccttcagagtggcaccgctctctg
ctgctgcctcagtcctgggcaggatttatggagagaacatatcatgccattttacaggga
aggcaagctgagttggagatgcagttaaagcatggaaaagagggacctgaagaagtgcaa
tacaaacaatttacagcctggctctgggtcagagatatgctgactgatgtaatcaagggt
gcttcaaaggaaagcccagtggtaaaaggaaattgtctcctagccttaacaggtcttgca
gttgttgtagccaaacatgagaaagggctttcttcagacatggaaaaacagtttgatact
gagccagactttcttttgacaaagcactggatctccatggtgattgatacgctgcttagc
attgtagatagtcattatcgccccaaaggccaagtcttcccatggttttaccagaaatcc
tactctggtgaaaatacagcgagtgctattgctcggtcctgtgcagcgactgctttgtct
cttttggtgcctgtttttattgtatcctacaaggaaaaggttgaggaagtcctgaattta
ctgattgctctgttacctgggaaaccaaatgcagatgagtctcaggctgttcaaattcac
atgggccttgctttggggatgtttgtttcacggctctgcaaagagaaagtcagtgatata
tctgataaacaaacgaatcccttaatgatgaagtctctgaatgcattagaagactgctgt
tttgacacaagtctagagtacaacactggatgcatcttgggtgtaggacttgttctctca
ctgatgtgtcacagcaacctaacagactcccaagattacatctctggtaccttgcgtaaa
ctttgcaaatacttggatgatgcagaagaccaaagcagaaccttccaggaaattcttgcc
tatgcaatttcctgtgtcagcatttccacttttagcgttaagatcattgaagctgtggag
gccgaagagatcatgaacaagttgcagaaattaacagaagctaatcagcagacagctggc
tttgctttggcactggggaatgtcgttcatgggctatctgtgtctggtcatggtaaagca
gaagaccttggtaacaggctgtttccggcctggatgaaaattgtacttgcagagggagcc
cctacaatgcaacgccttgcagcagtcaatgggctggtctctgtggtaggttctgaaaga
gcaatgctacagttgaaaactgaggctatccagtcttcgcagtttcaaagcaaacttaat
gaagtcatcagaaccctgagccagataatcagcttttctggagtgattggccttcaaaca
aattcagcatggcttttgggacatctgcatctctccactgtgtctgcaacccatagtcag
acatctgttccaccagattttagctacctgcctgaaaaaagcttccttagggcagcaact
gactttatgattgaagctggaaagaaaggccctgaacaagttcttcccaacttggtaaag
gcagctatggtccccatagcattaactggagaaagctaccagtatccaccagtgaactgg
gcatcagttctttcacctctactgaggttagattttggagatgagatacagcagctctgc
attaaactagctgtgacccaggcccagtcatctcagaatgcagcaatgcttttggggatg
tgggtagcaccacctctagtatacagtctaagtatccaagcaaagagataccttttcact
tctttacctgtgtgggtgaagtatgttgcagaagacaagctgcaggctttcactgaagtg
tttatggtgcagcattttgaagtaaagaaccagccaaaagatttggagctttgctggaac
attctacaggggctccaccaagccatgaaacttcctagccctgcccaatacagctggagc
tgtctttgtagagctgctgagaggatatttgagcttttgccaaatgagattcggcaaaat
gaggtgaagatgtatatagaatcagcaaaatgcttttcagaaatgacagatacagaggtt
gatcgaattgcccaagcctcaaagaacaacctggaaaaggtcacatttgtcaaagtttat
ttagtttctcaaggcagatttcctttgctcagatggagtgatgtgattagcactgcggct
ggataccaacagaaagaaaccattgtatggatgctactgcacagcttctaccatgcacga
atagtgatccatgaaaacactggagtcttaaagagaatggagtggctgttggaactgatg
ggatttattagaaatgtttctttaaagatgacttctataccaaatgtggctcctggagag
gctgtcagtttctgtttgtggatctttgcttctgctgtggttgcctgggctgaccacgct
gcaccactgctacttggcctcagtgctaattggtctccctgggaaagtgaagcagcctca
agattgtctccaaattatttgggcaagcggccagtagatagattggccatacaagagacc
ctcacccttcttccagggagcctgcaaactctattggctaaagagccatggaaagaacag
acacaaaagtttattgactggcagttcagcataatggaggcatcaagtgaagtactgtcc
catgcttacagagatcttttgaaagcttcactgttgaccctgaggtctctcccagagttc
aagaagaaggcaacatggacaaaggcttatggatggtag
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integrated database retrieval system