Sceloporus undulatus (fence lizard): 121920541
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Entry
121920541 CDS
T07740
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
sund
Sceloporus undulatus (fence lizard)
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sund03036
]
121920541 (SHOC1)
Chromosome and associated proteins [BR:
sund03036
]
Eukaryotic type
Meiosis-specific proteins
Others
121920541 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
121920541
NCBI-ProteinID:
XP_042303607
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All DBs
Position
2:complement(206318878..206374072)
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AA seq
1405 aa
AA seq
DB search
MFAAVKYIGIDYYYEKVARERLSFECLAIHIPSCLYQDKNYYHDGRFADDKYRKPWTRVS
IDSTQMTFSMLDLWKKSLYIDDFLERKPISSTCFYIHNEEVEIVPSSNPCSPFDIEEAYM
LKKESEKKEPISDNDLQSSSAPEVVKEQEKGLYIEDELIFTDYLVQYANWLPTLQTLLSR
LNIFYVEDPLLNSEGDRITEEDIFRECLTFKRTVTLLFAEESHEDFCKVSLKDEKAPVLA
IQLPFYKTADLRLCSEIPTYLALKNLYQVTPEVTGDENECLRITSEDFEGKITPETMEMS
NCCSILDIYANKNRSLLDFREPEASYTSFHPAELELPLTPPSRTEKFHVNLLCTQLQQEP
VSPFGNSDLIPESTTECLENRMWQSEKYQHPLNSLLLTDQQNVVPLCQQLPVTELKTLLS
VHEDTLVFSSLEEDGWINLREKMASPCILEAFCTDLSDGVIACTEGEVFSKFTEFQLDKC
LEENISLAKTTVESFRVAESSRTKDSCWSPPKKETFSSFRLEPTSIQYDRATEDESTPTE
NHIEETKLGREIRKPLSFGSQKEDKNDEFQLISLNNVSVGPDSVPQNKRPVPLELPRKSQ
DDFDFLSNFIMLRSKHVITQSEETNNVDIQEEGPNAKEESPAPEKHDSPIILNTTVPIEK
QSKENEAAASIEIKPSESQFQAYLILEVAVAPFLQDLMTLGMCNWKFATLNFDDSRFFLK
QQEKVMKDTFKEGVTGLKTGYLLTEKRGTLLESKNVISSLQRYSCVVVRNQHIGPDFPWT
HFSLMVEYNYSENSCWVDLCKKLNISYITFKTALPEAAGIDEGFPDNLGGVLSNVPIPYV
FLTSEGLINTPEILQLLESKYNITFIERSCCEALQFFGSTERYVVMTIDECTALVMQNVE
ELSYEKSSDNIVLRLMVLSLQYSSCWILLYSRERLNFQYSLGGKTLHHLALIYAALVPFA
QKSEDFDVKVALTPGIEETAFLVRQIADHTLLTSKKYPQEWLDKAWLSVLPSEAEKCLLT
FPCIHPLVAQVMLKKSSSLEWLLSATFAQLQQLLPEVPEKVLKHFTDITSLYNLKPLPKS
KPIKQPMPPEGETNSTINSSCQLLNSEVLLSSFPECNPFNEYSGFSPEVQKSKSCSLDYY
QNEFCTPLKSTLRNNLTAPAISYKEERHQCLPFLKKMETERRVHSSLALNNLEEPKHICC
EASMPYLSYSQSGTNTYLENYTQNRMFLSKVSGGQKLEIPVLSKNPVHQDVKNVCEIKKQ
PPVKQRHSAQDFRYSWCLDFNKGRPFQQSSDHFLGEFEGIAYCSPELQSEKKLGDKHPFL
QAAGSSFHSANFYKTISNTDGFFNPNFQITGDYAAKKGPNLSYNLREQDASAGLEFAQLP
QLKKRRLTFEKDPARSDGQTRLKFF
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcagctgtaaagtatattggaatagactattattatgagaaagtggctagggag
aggctttcctttgagtgcttggctattcacatcccttcctgtttataccaggataaaaat
tattatcatgatggaagatttgctgatgataaatataggaaaccctggacaagagtttct
attgattccactcagatgacattttctatgcttgatctctggaagaagagtctttacata
gatgatttcttggagaggaaacccatttcaagcacttgcttctatattcataatgaagaa
gttgaaattgttccaagttcaaatccctgttcaccgtttgatatagaagaggcttatatg
cttaaaaaggaaagtgagaagaaagaacctatttctgacaatgatttgcagtctagttct
gctccagaagtagttaaagagcaagaaaaaggtttatatattgaagatgaacttattttt
actgactatttggtgcaatatgctaactggctaccgactctccaaacactcttaagccgc
ctaaacattttctatgtggaggaccctcttttaaattctgaaggtgaccgtatcacagaa
gaagacatcttcagggagtgcttaacattcaaaaggactgtgacactacttttcgcagaa
gagtcacatgaagatttttgcaaagtatctttaaaggatgagaaggcccctgtacttgct
attcagttgccattctacaaaacagcagacctcagattgtgcagtgagattcccacatat
ttggcgctgaaaaatttatatcaagtaactccagaagttacaggagatgaaaatgaatgt
ctcagaataaccagtgaagactttgaaggaaaaattacaccagagacaatggagatgtct
aactgttgttccatattggatatttatgccaataagaatagaagtttactagacttcaga
gagccagaagcaagttatacttcattccatcctgccgaactggagttaccactgactcct
ccaagtagaacagagaagtttcatgttaatttactgtgcacgcaactacaacaagaacca
gtttcaccctttggtaacagtgatttaattccagaatccactactgaatgcttagaaaac
cggatgtggcaatcagagaaataccaacatcctctgaattcccttttacttacagaccaa
cagaatgttgtacctctgtgtcaacaacttccagttactgaactgaaaacactgctgtct
gtacatgaagacaccttggtatttagctccttggaagaagatggatggattaatttaagg
gagaaaatggcttcaccgtgtattttggaagccttctgcacagatttaagtgatggagta
attgcttgtactgagggggaagtattctcaaaatttactgaatttcagttagacaaatgt
cttgaagagaatatttccttggctaaaactacagtggagtcttttcgtgttgctgaaagt
agtagaacaaaggattcctgttggtctcctccgaagaaagaaacattttcgtcatttcgc
ttggagcccacatcaatacagtatgatagagctacagaagatgagagtacacctactgaa
aatcatattgaggaaaccaaattagggagagaaataagaaaacctttatcatttggaagt
caaaaagaagataaaaatgatgagttccaactaatcagtcttaacaatgtgtctgttgga
cctgacagcgtcccacagaacaaaaggcctgttccccttgagctgcctaggaaaagtcaa
gatgattttgattttttaagcaactttatcatgctgagatcaaaacatgtgatcacccag
agtgaggaaacaaacaatgtggatattcaagaagaaggtccaaatgctaaggaggagagc
ccagcacctgaaaagcatgatagtcctatcatccttaatactacagtccctatagaaaag
caaagcaaagaaaatgaagcagcagcttccattgaaattaaaccatcagagagccaattt
caggcatatcttatccttgaagtagcagtggctccatttttacaagacctcatgactctt
ggcatgtgtaattggaagtttgccacccttaattttgatgactccagattttttttaaaa
cagcaagagaaagtgatgaaggatacttttaaagaaggtgtaactggcttgaaaactggg
tatttgcttacagagaaaagaggaactttgttagagagcaaaaatgtcataagtagttta
caaagatattcttgtgttgttgtacgtaatcagcatattggacctgattttccctggact
catttttcactaatggtggagtataactattcagaaaattcctgttgggtggatctttgc
aaaaaattgaacatttcttatataactttcaaaacagctctcccagaagcagctggaatt
gatgagggtttcccagataatttggggggtgtcctttccaatgtgccaatcccctatgtt
tttctgacatctgagggactcatcaacaccccagaaatcctgcagttactggaatccaag
tacaacattacatttattgaacgaagctgctgtgaggcattacagttctttggaagtaca
gagcgctatgttgtgatgaccatagatgaatgtactgcccttgttatgcagaatgtggaa
gaactcagttatgaaaagtcatctgataatattgtattaagactgatggtgctatccctc
cagtatagttcctgttggattcttttatactccagagaaagactgaattttcagtatagt
ctgggtggaaagactctgcatcaccttgccttaatttatgcagccttggttccatttgcc
cagaagtcagaagactttgatgtgaaggtggctcttacaccaggaattgaagagacagca
tttttggttcgtcagattgctgatcacactctgttgacatctaaaaaatatcctcaggag
tggctggacaaagcctggctttctgtcttaccatcagaggcagagaaatgcttgcttaca
tttccatgcatccatcctctggtggctcaagtgatgttaaagaaaagttcttcactggag
tggcttttgtcggcaacttttgcccagcttcagcaacttttgccagaggtgccagaaaaa
gtcttgaagcattttactgacatcacatcactgtacaacttaaaaccactgccaaagtca
aaacccataaagcaacctatgcctcctgaaggagaaacaaactctaccatcaactccagt
tgtcaactccttaattcagaggtgttgttgtctagcttcccagaatgtaatccctttaat
gaatattcaggattctctcctgaagtacagaaaagcaaaagctgttctctagattactac
caaaatgagttttgtactccactgaaatcaacattaagaaacaacttaacggcccctgcc
atatcatacaaagaagagaggcatcagtgtctcccatttttgaaaaagatggaaacagaa
agaagagtacattcatcacttgcactgaacaatcttgaagaacctaagcacatctgctgt
gaagcctccatgccatacttaagctacagtcaaagtggcactaatacttaccttgaaaat
tacacgcaaaatagaatgtttctttcaaaggtgtcaggaggccaaaagctagagattcca
gtcttgtcaaagaatcctgtccatcaagatgttaaaaatgtatgcgaaatcaaaaagcag
cctcctgtgaagcagcgacactctgctcaggatttcagatattcttggtgccttgacttt
aataaaggtcgtccattccagcagagctctgaccattttctaggagaatttgaagggatt
gcatattgcagtccagagcttcagtctgagaagaaattgggggataagcaccctttccta
caagcagcgggttcatctttccatagtgcaaatttctacaaaaccatatcaaacacagat
ggattcttcaacccgaactttcaaataactggagactatgcagcaaagaaaggccccaat
ttatcatataatctaagagagcaagatgcttcagcaggtttagaatttgcccagttacca
cagctgaaaaaacgtcgtctaacatttgaaaaagaccctgcaagaagtgatggtcaaaca
cgtcttaaattcttttaa
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