Sceloporus undulatus (fence lizard): 121921444
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Entry
121921444 CDS
T07740
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
sund
Sceloporus undulatus (fence lizard)
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sund03041
]
121921444 (YTHDC2)
Enzymes [BR:
sund01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121921444 (YTHDC2)
Spliceosome [BR:
sund03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121921444 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
AAA_22
nSTAND3
ATPase
Ank
PhoH
AAA_16
AAA_7
AAA_23
Ank_4
AAA_29
T2SSE
SRP54
ABC_tran
AAA_30
Motif
Other DBs
NCBI-GeneID:
121921444
NCBI-ProteinID:
XP_042305496
LinkDB
All DBs
Position
2:complement(268293889..268340553)
Genome browser
AA seq
1464 aa
AA seq
DB search
MMSRPSSVSPRPPPPASSGPPSAGGPSGSAASASSALSSFGGGGGRAKGLKDIRIDEEVK
IAVNIALERFRYGEQREMEFPSSLTSTERAFIHRLSQSLGLISKSKGKGANRYLTVKKKD
GSELAHAVMTCNLIPNTKHAIRSLVQRFPVTNKERTELLPKTERGNVFAVEAENREMSKT
SGRLNNGIPQIPVKRGESEFDSFRQSLPVYEKQDEIVRIIKENKVVLIVGETGSGKTTQI
PQFLLDDCYKNGIPCRIFCTQPRRLAAIAVAERVAAERREKIGQTIGYQIRLESRVSPKT
LLTFCTNGVLLRTLMAGDSALSTVTHVIVDEVHERDRFSDFLLTKLRDTLQKHSSLKLIL
SSAALDVNLFVRYFGGCPVIYIPGRPFEVKEMFLEDLLRSTGYTNKEMIKYKKEKQREEK
QQTTLTEWYSAQDNSKPELQRQRAVPNVAEEYDLLDDGGDTVFSQLAEKDVNCLEPWLIK
EMDACLSDIWLHKDIDAFAQVFHLILTENVSVDYRHSDTSATTLMVASGRGFLSQVEQLI
GMGANVHIKSSNGWTALEWAKHFGQTEVVDLLESYCASLESGNLDESSLVHANASELSVE
DQELLKAYHHSFDDEKVDLDLVMHLLYNICHSCEAGAVLIFLPGYDEIVGLRDRILFDDK
RFADNAHRFQVFMLHSNMQTSDQKKVLKTSPQGIRKIILSTNIAETSITVNDVVFVIDSG
KMKEKSFDALNCVTMLKMVWISKASAVQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPE
LLRMPLQELCLHTKLLAPINCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTE
LGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRK
RFTAGTFSDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRAS
GFVRARGGGDIRDVNTNSENWAVVKGALVAGMYPNIVHVDRENTVLTGPKEKKVRFHPTS
VLSQPQYKKIPPANGQVAAIQALPTDWLIYDEMTRAHQIANIRCCSVVTPVTVALFCGSA
RLPSNALQEPSSFRVDGAPNDSSDSEMEDRTTANLAALKLDEWLNFKLDPEAASLLLQLR
QKWHSLFLRRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEEL
PLASSWRSNTSRKSSAEAEFADDAFNAERNPPKPALSYDINKEQNNTILRVLMKSASPAF
HQPLKYKERNVLHPKRSTDDRTDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNM
PVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSVVYLVFSVQGSGHFQGFA
RMSSEIGREKSQDWGSTGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQEL
EPQVGEQLLQLWDRIPLGDRNTAD
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcgcgccccagcagcgtctccccgcggccgcctccgccggcctccagcggccct
ccgagcgcggggggaccctcaggctccgcggcctccgcctcgtccgccctctcttccttt
gggggcggcggtggccgggccaaggggctgaaggacatccgcatcgacgaggaagtgaag
atcgccgtcaacatcgccctggagcggttccgctatggggagcagagagaaatggaattt
ccttcatccttgacaagtactgaaagagcattcattcaccgattgagtcaatctcttggt
ctgatttctaaaagtaaggggaaaggagcaaaccgatacctaacagtgaagaaaaaagat
ggatcagagttggcgcatgcagtcatgacatgtaatttgattccaaacacaaaacatgct
attaggagcctagtacagcgctttcctgtcaccaataaagagcgtacagagcttctccca
aagacagagagaggaaatgtttttgctgttgaagctgagaacagagaaatgagtaaaaca
agtggccgacttaacaatggcatccctcaaattccagtgaaacgtggagagtcagaattt
gattcatttcgccaaagtctgccagtttatgaaaaacaagatgaaattgttagaatcatt
aaagaaaataaagttgttttaattgtgggggaaactggatcaggaaaaactactcagatt
cctcagtttctacttgatgactgttacaaaaatggaataccatgtcgcatattttgcact
cagccaaggcgtttggctgcaattgctgtcgctgaaagggttgctgctgaaagaagagag
aagatagggcagactatcggttatcagatccgactggaaagcagggtttctccaaagaca
cttctaacattttgcaccaatggcgtattacttcgtacactaatggctggagatagtgca
ctatcaactgtaacacatgttattgtggatgaagtccatgagagggatcggttcagtgac
ttcttattaacgaagttgagagacacattgcagaaacactcgtctttgaaactgatcctc
tctagtgctgctctggatgtgaatctctttgtcagatattttggaggctgcccagtgata
tatataccagggagaccttttgaagtaaaagagatgtttctggaggatctactgagaagc
acaggctatacaaataaagaaatgatcaaatacaaaaaggagaaacagcgagaggagaaa
caacagacaactttgactgaatggtattctgcacaagacaacagcaagccagaactgcaa
cgacagagagcagttccaaatgtagctgaagaatatgatttgttggatgacggtggtgac
acagttttcagtcagttggctgaaaaagatgtcaattgtcttgaaccttggttgattaaa
gaaatggatgcttgtctttctgatatctggctgcataaagacattgatgcctttgcacag
gtcttccaccttattttaactgaaaatgtcagtgttgattaccgacacagtgacacaagt
gcaacaactttaatggtagcttctggaagaggtttcttgagccaagttgaacagctgatt
ggtatgggagcaaatgttcacatcaaatcatccaacggctggacagctttggagtgggct
aaacattttggccagacagaagtggtcgacctcctggaatcctactgtgcctcactggag
tctggcaatctagatgaaagttccttggtccatgctaatgccagtgaacttagtgtggaa
gatcaagaactcctgaaagcttaccatcatagttttgatgacgaaaaggtggatcttgac
ctggtcatgcacttattgtacaatatctgtcatagctgtgaagctggagccgttttaatt
ttccttcctggatatgatgagattgtcggtttgagggatcgcatactctttgatgacaag
aggtttgctgataatgctcacagatttcaggtttttatgctgcattcaaacatgcagacc
tctgatcagaagaaagttctgaagacctcacctcaaggtattcgcaaaataatactttct
acaaatattgcggaaaccagcattacagttaatgatgtcgtctttgtgattgactctgga
aaaatgaaagagaagtcctttgatgcattgaactgtgtaactatgctaaagatggtatgg
atttctaaagctagtgctgttcaaagaaagggcagggcaggacgttgtcggcctggaatt
tgtttccgacttttcagtagactaagatttcaaaatatgctggaatttcagactccagaa
cttctaagaatgcctctacaggaactctgtttgcatacaaaattgctagctcctatcaat
tgtccaattgctgattttttaatgaaagctccagaaccaccacctgctttaattgtgaga
aatgctgtgcagatgcttaagacaatagatgctatggatacctgggaggatctgacagaa
ctaggctatcatctggctgacctaccagtagagccgcatcttggtaaaatggtgttgtgt
gctgttgttctcaagtgcctggatccaattctgaccatcgcatgcactcttgcatatcgt
gatccatttgtgctgccgacacaagcatctcagaaacgtgcagccatgctgtgcagaaaa
cgattcactgcagggacttttagtgaccatatggctcttctccgggctttccaggcatgg
cagaaggctcgaagtgatggttgggaaagagctttttgtgagaaaaatttcctgtctcaa
gcaacaatggagattatcataggaatgagaacacagttacttggacagctcagagcatca
ggatttgttagagccagaggtggtggtgatataagagatgttaacacaaattcagaaaac
tgggctgtggttaaaggtgccttagtagctggaatgtatccaaatatagttcatgttgat
agagagaacactgtattaactgggccaaaagagaagaaagttcgatttcatcctacctca
gttctcagccaacctcaatataaaaagattccaccagctaatggtcaagtggcagctatt
caggcactccccactgactggcttatatatgatgaaatgacacgagcccaccaaattgcc
aatatcaggtgctgttcagttgtgactccagtcactgtggctctcttttgtggatcagct
aggttgccaagcaatgctttacaggagccatcatccttcagagttgatggtgctcctaat
gacagcagtgacagtgagatggaagacagaacaactgctaacttggctgcactgaaactg
gatgaatggctcaatttcaaactagatccagaggcagctagcctcctcttacaactgagg
cagaaatggcacagtttatttttgcgacggatgagagccccctcaaagccctggtctcaa
gttgatgaggcaactatacgagcaatcattgcagtgctgagcactgaagaacaatctgca
ggtctacagcagccttcaggaattgggcagagaccaagaccaatgtcatctgaagaactt
cccttagcatcttcatggagatcaaacactagccggaaaagctcagctgaagcagagttt
gcagatgatgcttttaatgctgagagaaatccccccaaaccagctttaagttatgatata
aacaaagagcagaacaatacaatattaagagtcctaatgaaatcagcttctccagcattt
caccaaccactgaaatacaaagagagaaatgtcctacatcctaaacgaagtacagatgac
aggacagaccagtcatctgtgaaatctactgacagcagcagttatcccagcccctgtgcc
agtccttctcctccatcatctgggaagggctctaagtctccttctccaaggccaaatatg
ccagttcggtactttattatgaaaagcagcaatctgaggaaccttgagatttctcaacag
aagggaatttggtctacaactccaagtaatgagcgaaaactgaatcgagctttttgggag
agcagtgttgtttatttggtattttctgttcaaggatcaggacatttccagggttttgct
cgaatgtcttcagagataggacgtgagaaaagtcaagattggggttctacaggtttaggg
ggtgtattcaaggtagaatggatccggaaagaaagtcttccctttcagtttgctcatcac
ttgctcaacccttggaatgacaacaagaaagtacaaataagccgagatggccaggaacta
gaacctcaggttggtgaacagctgctacaattgtgggaccgtattcctttaggagacaga
aacacagctgattga
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integrated database retrieval system
