Sceloporus undulatus (fence lizard): 121922150
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Entry
121922150 CDS
T07740
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121922150 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sund03019
]
121922150 (XAB2)
03041 Spliceosome [BR:
sund03041
]
121922150 (XAB2)
Messenger RNA biogenesis [BR:
sund03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121922150 (XAB2)
Spliceosome [BR:
sund03041
]
Complex B
Other components
Prp19-related factors
121922150 (XAB2)
Complex C
121922150 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_2
Suf
TPR_12
TPR_19
TPR_8
ARM_TT21_C
TPR_15
ARM_TT21
TPR_16
RPN7
TPR_1
NRDE-2
LTN1_E3_ligase_6th
CKAP2_C
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
121922150
NCBI-ProteinID:
XP_042307108
LinkDB
All DBs
Position
2:125937248..125969386
Genome browser
AA seq
852 aa
AA seq
DB search
MPELETVLGKRELLFEEEDLQYEEEILRNPFSVKCWIRYVEFKQNAPKHILNLIYERALK
ELPGSYKLWYNYLKQRRKQVKSRCVTDPSYEEVNNCHERALVFMHKMPRIWLDYCQFLMD
QCRITRTRRTFDRALRALPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSPENAEE
YIEYLRSIDRLDEAAVRLAAIVNDERFVSKEGKSNYQLWHELCDLISQNPDKVKSLNVGA
IIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQF
EESMIAAKMETTSEMGREEEDDVDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHK
RVKLYEGKPREIINTYTEAVQTVDPFKATGKTHTLWVSFAKFYEVNGQIEDARTIFEKAT
KVNYKQVDELASVWCEYGEMELRHENYDQALRILRKATAIPAKKAEYFDSSEPVQNRVYK
SLKVWSMLADLEESLGTFKSTKAVYDRILDLRIATPQIIINYGLFLEEHNYFEESFKAYE
RGISLFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPQKYAKTIYLLYAKL
EEEYGLARHAMAVYERATQAVQPSEQYDMYNIYIKRAAEIYGVTHTRSIYEKAIEVLSDE
HAREMCLRFADMECKLGEIDRARAIYSYCSQMCDPRTTANFWQTWKEFEIRHGNEDTIRE
MLRIKRSVQATYNTQVNFMASQMLKVYSNATGTVSDLAPGQSGMDDMKLLEQRAEQLAAE
AERDQPRTKEKILFVRSDASRSELAELSKQANPDEIDIDLDDEDESEDNEPDEVQLEQQS
VPSAVFGGLKDD
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctggaaacggtgctggggaagcgggagctcctcttcgaggaggaagattta
caatatgaggaggagatcttgcgcaatcctttctctgtcaaatgctggatccgctatgtt
gaattcaagcagaatgctcccaaacatatacttaatctaatctatgagagagctcttaag
gaattgccagggagctacaagctatggtataattatcttaagcagcggcggaagcaggtg
aagagtaggtgtgtaacagaccccagctacgaagaagtgaacaactgtcatgagcgtgct
ctagtcttcatgcacaagatgcctcggatatggctcgattactgccagtttctcatggac
caatgtcgaatcactcgtacacgcaggacctttgaccgggcactccgggctctgccaatt
acacagcatcatcgtatttggccactttacctgaaatttgtgcgcctgtatccattacct
gaaacagctgtacgagtctatcgcaggtacttgaagttgagtccagaaaatgctgaggaa
tatattgagtatctgcgctccattgaccgcctagatgaggctgctgtccgccttgctgcc
attgtgaatgatgaacgttttgtttccaaggagggaaaatccaattatcagctatggcat
gagctctgtgacctcatctcacagaatccagataaggtgaaatctctcaatgtaggggcc
atcatccgcggtggtttgacccgtttcactgaccagctgggcaagctgtggtgttccttg
gcagactactatatccgcagtgggcattttgagaaggctcgtgatgtgtatgaagaagct
attcagacagtgatgacagtgcgggatttcactcaagttttcgacagctatgcccagttt
gaggagagtatgattgcagcaaagatggagaccacatcagagatggggcgtgaggaggaa
gatgatgttgacctggaactgcgactggcacgctttgagcagctgatcacacgccggcct
ctgcttctcaacagtgtccttctgcgccaaaatcctcacaatgtccatgagtggcacaag
cgagtaaagctgtatgaaggaaagcctcgagagataatcaacacgtacacagaagcggtg
cagacagttgacccatttaaagccactggaaagacacacacgctgtgggtttcttttgcc
aagttctatgaagtcaatggacagatagaagatgccagaaccatctttgaaaaagccacc
aaggtaaactacaagcaagtggatgaacttgccagtgtgtggtgtgaatatggtgaaatg
gaattgcgacacgagaactacgaccaagcactgcgcatcctacggaaagccacagccatc
ccagctaagaaagcagagtattttgattcttctgaacctgtgcagaaccgtgtttacaag
tccctcaaagtatggtccatgttggctgacttggaagaaagtctgggtactttcaagtcc
actaaagctgtgtatgaccgcattctggatctccgcattgccaccccccaaatcatcatc
aactatggcctctttctggaggagcacaactactttgaggagagcttcaaggcatatgag
agaggcatttcactcttcaagtggccaaatgtgtatgacatatggaacacctacctaaca
aaattcatcgaccgttatggtggcaagaagttggaacgtgctcgggacctctttgaacag
gcgctggatggctgtccccagaaatacgctaaaactatctatctgttgtatgccaagctg
gaggaagaatacggcttggcccgccatgctatggcagtgtatgagcgagccactcaggct
gtgcagccttcagagcagtatgacatgtacaacatctacattaagagagcagctgaaatc
tatggcgtcacacacacacgtagcatctatgagaaggcaattgaggtgttgtcagatgaa
catgcccgggagatgtgcttgcgctttgctgacatggagtgcaaactgggtgaaatagat
cgggctcgggccatctattcttactgttcgcagatgtgcgatccccgtaccactgccaat
ttctggcagacatggaaagaatttgagatccggcatggaaatgaggacactatccgggag
atgctgcgcatcaaacgaagtgtgcaggctacctacaatacgcaagtcaacttcatggcc
tcccaaatgcttaaagtttacagcaatgccactggcacagtgtctgacttggcacctgga
cagagtggcatggatgacatgaaactcttagagcagcgggcagagcagctggcagctgaa
gcagaaagagatcagccccgaactaaggagaagatcctgtttgtcaggagtgatgcttcc
cgcagtgagttggctgaactctccaaacaagccaaccctgatgagatagacattgacttg
gacgatgaagatgagagtgaggacaatgagcctgatgaggtacagctggagcagcaaagt
gtcccttctgctgtgtttggaggtcttaaggacgactga
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