Sceloporus undulatus (fence lizard): 121922300
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Entry
121922300 CDS
T07740
Symbol
DDX39B
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03013
Nucleocytoplasmic transport
sund03015
mRNA surveillance pathway
sund03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121922300 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
121922300 (DDX39B)
03015 mRNA surveillance pathway
121922300 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sund03019
]
121922300 (DDX39B)
03041 Spliceosome [BR:
sund03041
]
121922300 (DDX39B)
Enzymes [BR:
sund01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121922300 (DDX39B)
Messenger RNA biogenesis [BR:
sund03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121922300 (DDX39B)
Spliceosome [BR:
sund03041
]
Complex C
Other components
EJC/TREX
121922300 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121922300 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121922300
NCBI-ProteinID:
XP_042307474
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All DBs
Position
2:14847115..14860478
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AA seq
428 aa
AA seq
DB search
MTENDVDNELLDYEDDEVENQAAGEGVDVPSKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaacgacgttgacaacgagctgttggattatgaagatgatgaggtggaaaat
caggcagctggagaaggggtggatgtcccatctaaaaaagatgtcaagggatcctatgtc
tctatccacagttctggttttcgtgattttttgttaaagccagaactcctccgtgccatt
gttgactgtggctttgagcacccctcagaagtgcagcatgagtgcatcccacaggcaatt
ttgggcatggatgtcctttgccaggccaaatctggcatgggcaagactgccgtctttgtt
cttgctacacttcagcagttggagccagtcacaggacaggtatcagtgctagtaatgtgt
cacacccgtgaactggccttccagatcagtaaggagtatgagcgcttttccaagtatatg
cccagtgtcaaggtagcagtgttctttgggggcctgtccatcaagaaggatgaggaggtg
ctgaagaagaactgcccacatattgtggtgggaaccccgggccgcatcctggctttggcc
cgcaacaagagcctcaacctcaaacatatcaagcacttcatcctggacgaatgcgacaag
atgcttgagcagcttgatatgcgccgggatgtccaggagatcttccgcatgaccccgcat
gaaaagcaggtcatgatgttcagtgccactctcagcaaggaaatccgccctgtgtgccgc
aaattcatgcaagaccccatggagatcttcgtggatgatgagaccaagctgacgctgcac
ggtctgcagcagtactatgtcaaactgaaagacaacgagaagaaccgcaagctgtttgac
ctgcttgatgtactggagttcaatcaggtggtcatctttgtgaagtctgtgcagcgctgc
attgcactagctcagctactggtggagcagaacttccctgcaattgccatacacaggggc
atgcctcaggaagagaggttgtcgcggtaccagcagttcaaggatttccagcgtcgtatc
ttggtggccaccaatctctttggccgtgggatggatattgagcgagtcaacattgctttc
aactatgacatgccagaggattcagacacctatctgcaccgggtggcacgtgctgggcgc
tttggtacaaagggcttggcaattacttttgtttcggatgaaaatgatgctaagatactc
aatgaagtgcaggaccgttttgaggtgaacatcagtgagctgcctgatgagatcgacatc
tcctcttacattgaacagacccgataa
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