Sceloporus undulatus (fence lizard): 121922503
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Entry
121922503 CDS
T07740
Symbol
VPS13A
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
sund
Sceloporus undulatus (fence lizard)
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sund04131
]
121922503 (VPS13A)
Membrane trafficking [BR:
sund04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
121922503 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
121922503
NCBI-ProteinID:
XP_042307954
LinkDB
All DBs
Position
2:247181209..247389586
Genome browser
AA seq
3194 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLNLGIWGGAFVLRNFXNNFNDLSPQYQFDVPFKV
KAGHIGQLNLKIPWKNLYTQPVEAVLDGVYLLIVPTASIKYDAEKEEKHQLEAKQRELQR
IEDAKQKIADRDKPQEKQDTFLEKLITQVIRNLQLKISNIHIRYEDDITNKDLPLSFGVS
LQNLSLQTSDQNWNPCMQDATTKLFYKLVRLDNFFAYWNVKTEMFYHSSYKESLNNLKHG
VASSNTIPDGYSFVFRPISAKAKLRMNPRSDVDFSAPKLDLDVNLQDIAIELNKSQYFSI
MELLESIDMMTRNLPYRKYRPDVPVHNNAKKWWLYVIHGILEVNVQPKLQMWSWEHIRYH
RNRVKSYKDLYKTKITSKKPAENSMNMLEELEKTLDIFNITLARQQAEFEATKAGLKIFR
PGAKQDDEESTGWFGWMWGWAGNKSTESVQEPKGFEQLMTPQEKDKLYAAIGYSETAVDP
TLPKTYEAMKLYVKLLSMTILIREMKEKPALIEIALIDLRTTVTQRPGAEAIRFESSVSA
FEVQGMTQGKTVPHLLSSNTVHSKQNTSLFTIMFETNPLDETANQKLRIESQPLEIIYDA
MTVNSLVDFFRPPSNVHLEQLTSATLTKLEEFREKTATGLVYVIETQKILDLKINLMASY
IIVPQNGFYESTANKLLLDLGHLKMTSKSRSTLEDIKVGESALEDIMSRAYDKFDIQLSS
IQLLYSRYDESWVEARSLRSSSQHILQPLDVKMELSRAMVVTDVRMPKYKIFGELPLLFF
NISDEKLKCILELIDSIPKPESPPDISSSQPSKLQVSSLLATPQMSVSVLPLLEHHSGAG
SSESEDEFYDAPSSPVEDLPFFEAPLGSLSRSGSVRKNAARRESLKNMIDFQLRFEISEV
FLQVCRLAEGVEKPIIQLEIFKLGTELKLRTYDMTAMAFLSEIGLLCPEYMDDKDKPVYL
ISTLDNSVDDLLSIEYIKADINAPELKTTYKNVLQLIKVNFSSLDIHLHTEALLNTMNFL
NNLLPNQETAPVEVVQEKEEKKEVLKKLTSKKSKYEDVCDLHVCTDLSSLRIFIREQKRR
ISEICVEGLDSEVMVKKETTEVSAKLKNIIIVDCDEAALYKKALYITGKEVFSFKMVTYT
YTVDDVSYANMNAVDSQIYLTVGCIQIIFVNKFVSSILAFVNHFQTAKEAITEATVQAAE
KAATGVKELAQQSSRMALDINIKAPVVIIPQSAISTDVLVADFGLITVKNEFLVVKTKLR
YNIPPVLDNMHVKLSELKLYRSSIVDGLLQNEIQLLQPLNLEVTVERNLAALWYHEIPDI
KISGRLKPMSLILSQGDITTILRTLNENLGDSSSPSPPVPEKKDVLSIHSGAVNVSQHSG
AGITVVTSAIVEMHSSLKVKTTLKLDFQFDSLTLVLYSPNSNQLPVQDERDDRLKLAEFK
LLLISAAVKMLSDGSMNSSVRLTNCTLDDKRQTVQKATPRMVEMKHGSEKKVMMEISYKQ
GRDGTTVLDTVVQDTYLCASIEFLLTVADVFLKATAESAAAEKNFKQTLAVKEQVPVQVE
STMEINVVVKNPEIVFVADLTRSDAPALVATAQCEVSMKNGPELSKMTAAVKDINVKACP
FLPDMRKGNITTILQPCDFFFDMMQSGEEPQKAELSIKSITIKVSPIILNTVMTITSALF
PTTETAEKDISPLPPDLWDKKDIKNLNMWFLEESSENKDPVSVAELVPKGETLKMKIETV
VITLEAGVGHKTVPMLLAKSSFSGEVKNWSTLINLSSRLELEVHYYNEMFGVWEPLLEPL
EIENSDEFRPWVLELKMKKKAKKTLVDSVAEEEHYKVPEFKTVITIYSQDQLNITLSKCG
LLMLSNLGTAFAEAATQTSEIFRKDRAPFVLTNTLGVSTIVLPSDSFSVLNVEPTGNSFH
LEDGQSLSMEYVKTKSDQDQFTAMTTLSSKVFYIWLTPQNHSTTDKIPLTTVGRSLYRVR
HNDSGVVRSIVCQIDTIEGSKMITVHSPIQIKNHFSIPLSIFEDGKCLGVALPEDEFNIP
LTSYRSLLFFQPVIDANGISGEYASSDGISFDEMVKNFGKVLQKKCPLVKSSNHGLIINI
VPVQDTLVSSVCTDDQWDLPYVVHLWPSVLLRNLLPYHITYSSEGDSTTRNTLEDGCTAQ
IHNAVLDETKLELCLLNYLNKNWTAKYQIQRNQEEISFITFSCITDLDKTDLDIAVHVTY
ATGHVIIAIHSPYWMVNKTGRMLQYKADGIHRKHPPEYKMPLLFSFQPKYFYNENKVQLM
VTDSDLSDHFSLDTVGSHGFVKCKGPKREYQVGVTINNSSFNLTRIVSFTPFFMITNRST
HTLEVAEEGNETWIPILLQQCIPFWPENNESKLRVRVENSDVPPKTIQYDKQENSLLLHL
ENRLGDIVVDITVAEHSTIIAFSNYHDGAAPFLIINHTKGEIIEYGQSSLCVMEDVLEPN
KGMLYTWADPVGSRKLKWKCGKSSGEVTQKDDLMTPIQVGNKTIYLVSFFEGLQRIILFT
EDEKVFKVSYESEKVELAEQEIIISLQDVGISLVDNYLKQEIGYIGITSSDVIWETKPKK
KSRWRPLSLKQTEKLEKEFSEYCDHSPTENKIVELDDNIPVCLTPTGNNMKILQPTEIPV
RRSFLPALKVQYSTSEHQSSFRVQIYRIQIQNQIPGAIFPFVFYPIKPPKSISLDSEPKP
FTDVSIVMRTAGHSQISRIKYFKVLIQEMDLRLDLGFLYALADFFTLADEVPKGQEIELF
KKDVESVQEELKNVSSTDTSQISLYEYFHISPIKLHLSFSLSTGGEDINREERRKDLIPV
QSLNLLLKSIGATLTDVQDVVLKLAFFELNYHFYTTQQLQWAVIMHYSKQAIKQMYVLIL
GLDVLGNPFGFIRDLSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAA
SRITGAMAKGVAAITMDEDYQQKRREAMNKQPSGLKEGITRGGKGLVSGFVSGITGIVTK
PIRGAQKEGAAGFFKGIGKGLVGAVARPTGGIIDMASSTFQGIKRATHASNDVVSLRPPR
FFSDDGVIRPYRLRDGAGSQMLQNIENGRFAKLRYFAHAMVNNTDLLMVTRSGILFVTRG
TFGQLTCEWQYTYDEFTKEPFIVDGRRLRIEAKERVKSVFHAKEFGKIINFKTPSDAKWI
LSKLEEARENQTNL
NT seq
9585 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtccctggtggtggacgtcctgaaccggttcctgggcgactacgtggtc
aacctggacagctcccagctcaacctcggcatctggggaggtgcattcgtcttgaggaat
ttttgaaataactttaatgatttatctccacagtatcagtttgatgtaccatttaaagtt
aaagcaggacacattggccagctgaatttgaagattccatggaaaaatctttacacacaa
ccagttgaagctgtgctagatggagtttacttgcttattgtgccaacagccagtattaaa
tatgatgcagaaaaagaagaaaaacaccaattggaagcaaagcagagggaactgcaaaga
atagaagatgcaaaacagaagattgctgacagagataaaccacaagaaaagcaagatact
ttcctagaaaagctaattactcaggtcatcagaaatcttcagttgaaaatttccaacatc
catattcgatatgaggatgatatcacaaacaaagatcttccattgtcatttggtgtctca
cttcagaatcttagtttacagacttcagatcagaactggaatccatgtatgcaagatgca
acaactaaactgttctataagcttgttcgactggacaacttttttgcttattggaatgtg
aagactgaaatgttttatcatagtagttacaaagaatctttgaataatttgaaacatgga
gttgcaagcagtaatacaattccagatggctacagttttgtgttccgtccaatttcagct
aaagcaaaactacgtatgaatcctcgatctgatgttgatttttctgcaccaaaactagac
ctagatgtaaatcttcaggatatagccatagaacttaataaatcacagtattttagtatt
atggagcttcttgagtccattgatatgatgacccgaaatttaccatacaggaaatataga
ccagatgttcctgttcacaataatgccaaaaaatggtggttatacgttatacatggcatt
cttgaagtaaatgtccaacccaaactacaaatgtggtcttgggaacatattcgttaccac
aggaatcgggtaaagagctataaggatctatataaaacaaaaataacatcaaagaagcct
gctgagaatagtatgaatatgctggaggaactagagaagactttggatatattcaacatt
actttggcaagacagcaggcagaatttgaggcaactaaggctggattaaagattttcaga
ccaggagctaaacaagatgatgaagaatctactggctggtttggttggatgtggggatgg
gctggaaataaaagcactgaatctgtacaagaaccaaaaggttttgaacaattgatgacg
ccacaagaaaaggacaaactctatgcagcaattggttatagtgaaacagctgttgatcca
acattgcccaaaacgtatgaagctatgaagctttatgtaaaactattaagcatgacaata
ctgataagagaaatgaaggaaaaacctgcactgatagaaattgccttaattgatctgcgt
acaacagtaacgcaacggcctggtgctgaagcaataagatttgagtcaagtgtaagtgca
tttgaagtgcagggcatgactcaaggaaaaacagtaccccacttgctgtcctcaaataca
gtccactcaaagcagaatacatcgctctttaccatcatgtttgagaccaatccattagat
gaaactgccaatcagaagctaagaatagaatcacagcctttggaaataatatatgatgca
atgactgtgaatagcttagtggattttttccgccccccaagtaatgttcatttagagcaa
ctgacctcagcaactttaacaaaattagaagaatttcgggaaaagacggctacagggcta
gtgtatgttatagaaacgcaaaagattctagatttaaaaataaatctaatggcttcctat
atcattgttccacaaaatggattctatgaatcaacagcaaacaaattacttttggatctt
ggtcatttaaagatgactagtaaaagtcgttctaccttggaagatatcaaagttggtgaa
agtgctcttgaagatattatgtcaagagcatatgataagtttgatattcagctcagtagc
atacaactcctttatagcagatatgatgaaagttgggtggaggcccgtagtctacgatca
tcatctcaacatattttgcagcctttggatgttaaaatggaactaagcagagcaatggtt
gtaacagatgtaagaatgcccaagtacaaaatatttggtgaactaccattactgtttttc
aacatctcagatgagaaattgaaatgtattctggaacttattgatagtattcctaaacct
gaaagtcctcctgacatctcttcttcacaaccttccaagcttcaagtatcttcattgcta
gcaacaccccaaatgtcagtctctgtgcttccacttctagaacaccattctggagctgga
tcaagtgaatctgaagatgaattttatgatgccccaagtagtcctgtggaagacttgcca
ttttttgaagcacctctgggttccttgagtaggagtggcagtgtccgaaaaaatgcagca
agacgagaatctttgaagaatatgattgatttccaactaagatttgaaatatctgaggta
tttcttcaagtgtgccgtcttgcagaaggtgttgaaaagccaatcattcaactagagatt
ttcaaattaggcactgaacttaagctaaggacatatgatatgactgcaatggcttttctt
agtgaaattggcttattatgtccagaatatatggatgataaagacaagccagtttactta
atttcaacactggataattcagtggatgatcttctatctattgaatatataaaggcagat
attaatgctccagaactgaaaactacctataaaaacgtcttacagctgataaaggtgaat
ttttcttccctagatatccatttacacacagaagcccttctgaatactatgaatttccta
aataatctgcttccaaatcaagagacagctccagtagaagttgtccaggaaaaagaagaa
aagaaggaagtccttaagaaacttacctcaaaaaaatcaaaatatgaagatgtttgtgat
cttcatgtttgcacagacctgtcaagtttacgtatttttataagagagcaaaaacgcagg
atatctgaaatttgtgttgaaggtcttgatagtgaggtgatggtaaagaaggaaacaact
gaagtatcggctaagttaaagaatataatcattgtggattgtgatgaggctgcactgtac
aaaaaggcactctatattactggaaaggaagtcttcagcttcaagatggtgacatacaca
tataccgtggatgatgtctcttatgcaaatatgaatgctgttgacagccagatttattta
actgttgggtgcattcaaattatttttgtcaacaaatttgtttcttctattttggcattt
gtaaaccattttcagacagccaaggaggcaattactgaagccactgttcaagctgctgag
aaagcagctactggtgtaaaggaattggctcaacagagttctcgaatggcactggatatc
aatattaaagcacctgttgtcataatcccacagtcagcaatatctactgatgttctcgtg
gctgattttggtttgatcaccgtaaagaatgagtttctagttgttaaaacaaagcttcga
tataacatcccaccagtccttgataatatgcatgtgaaactgagtgaactaaaattgtac
agatcaagtattgtggatggcttattacaaaatgaaatacagttactgcaaccattaaat
cttgaagttactgtagaacgcaatttagctgctctctggtatcatgaaattcctgacatt
aaaatatctggccgcctcaagccaatgagtctgatcctcagtcaaggtgatataactact
atcttgaggaccttgaatgaaaatttaggagatagctctagtccttcaccacctgtacca
gagaaaaaggatgttctaagcatccacagcggagctgtaaatgtttctcagcattctggg
gctggaataacagtggtgacatctgctatagtggaaatgcattcctctttaaaagttaaa
accacactaaaactggacttccagtttgattccctgactctagttttgtacagtccaaat
tccaaccagcttcctgttcaggatgaacgagatgatcgtctgaaacttgcagaatttaaa
ttgttgctaatatcagctgctgttaaaatgttatcagatggttcaatgaattcctcagtc
aggttaaccaactgcactttagatgataaacgacagaccgtccaaaaagctacaccaaga
atggtagaaatgaaacatggatctgaaaaaaaagttatgatggagataagttataagcag
ggaagagatggcaccactgttcttgacacagttgttcaggatacatatctttgtgctagc
attgagtttttgcttactgtagcagatgtatttctgaaagctactgctgaaagtgctgct
gcagaaaaaaactttaaacagactttggctgtaaaggaacaagttcctgtacaggtagaa
tccacaatggaaataaatgttgtagttaaaaatcctgagattgtatttgtggcggatttg
acaagaagtgatgctcctgcattggtggcaacagcacagtgtgaagtctccatgaagaat
ggcccagaactgtctaaaatgacagcagctgtgaaagatataaatgtgaaagcttgccca
tttctgccagatatgagaaaaggcaatattactacgatactgcagccctgtgacttcttt
tttgatatgatgcagtcaggtgaagagcctcagaaagctgaactctccattaaatccata
acaattaaggtttcaccaattatcttgaataccgtcatgaccattacatcagcacttttt
ccaacaacagagactgcagagaaagacattagcccactaccgccagatctttgggacaag
aaggatattaaaaatttgaacatgtggtttcttgaagaatcaagtgaaaataaagatcct
gtttctgtagctgaattggttcctaaaggagagacattgaaaatgaaaattgagactgtt
gttataacccttgaagctggggttggtcacaaaacagtgccaatgctcttagcaaagtct
tcgttttcaggagaagtaaaaaactggagtactctgatcaacctgtcttctcgtcttgaa
ctagaggtacattattacaatgaaatgtttggcgtctgggagccattgcttgaaccactg
gaaattgagaacagtgatgagttcagaccatgggttctagaactgaagatgaaaaagaag
gccaaaaagaccttagttgattcagttgctgaagaggaacactacaaagtaccagagttc
aaaacagtgataactatttactctcaagatcagttaaatattacattgtccaaatgtggg
ctactaatgttgagtaacctcggcacggcatttgcagaggcagctacgcagacttcagaa
atcttcagaaaagatcgggccccttttgtattaaccaataccttaggggtctccaccatt
gtcttaccaagtgattccttcagtgtccttaatgttgaaccaacggggaattcatttcat
cttgaagatggacaaagtctaagtatggaatatgtcaaaactaaaagtgatcaagaccag
ttcacggcaatgactaccctgagcagtaaagtattttacatttggctcactccccagaat
cattccactactgacaagattcctctgacaacagtgggacgaagtctttacagagtaaga
cacaatgattcaggtgttgtacggtctattgtttgtcaaattgatacaattgaagggagc
aagatgataacagtacactctccgattcagataaagaatcacttttcaattcccttgagt
atatttgaagatggcaaatgtttaggagtggctttaccagaggatgaatttaacatacca
ttgacatcttacagatcactactgttttttcaaccagtaattgatgcaaatggaatttct
ggagagtatgcatcaagtgatggaattagttttgatgaaatggttaagaattttggtaaa
gtgttgcagaagaaatgcccactggtaaaatcatctaaccatggacttatcatcaatatt
gtcccagtgcaagatactttggtatcttctgtatgtacagatgatcagtgggatttacca
tatgttgttcatttgtggccttcagttcttctccgtaatcttcttccttatcacatcacc
tattcctcagagggagatagtacaacacgcaacactctggaagatggatgtactgctcag
attcataatgcagtactggatgagaccaagctagaactgtgtttacttaattatctcaat
aaaaattggactgccaagtaccaaatccaaagaaatcaggaagaaattagtttcatcaca
ttttcctgcattacagaccttgataagacagatttggacattgctgtacatgtaacatat
gctaccggacacgtgattatagcaattcacagtccatactggatggtaaataagactggt
cgaatgttacagtataaagctgatggtattcaccgaaaacatccacctgaatataaaatg
ccacttcttttttctttccaacctaaatacttttacaatgaaaacaaggttcaactcatg
gtgacagacagtgacctttctgatcatttttccctggatacagttggcagtcatggtttt
gttaaatgtaaagggcccaagagggagtaccaagttggtgtcactataaataacagcagt
tttaatctcactagaatagtgagcttcactccttttttcatgattacaaacagaagtaca
catactttagaagtagctgaagaaggcaatgaaacatggattccaatacttttacagcag
tgtattcctttttggcctgaaaataatgaaagcaaattgcgtgttagagtagaaaattct
gatgttccaccaaaaactattcagtatgataagcaagaaaatagtttgctgctacactta
gaaaacaggcttggagacattgttgtggatattacagtagcggagcattcaacaataatt
gcattttctaattaccatgatggtgcagctccattcctgataattaaccataccaaagga
gaaataattgaatatgggcaaagttcactctgtgtaatggaagatgttttagagccaaat
aaaggaatgctttacacatgggcagacccagtaggctccagaaaattgaaatggaaatgt
ggaaagagcagtggggaagtaactcagaaagacgatttgatgacacctatccaagtggga
aataaaaccatatatttagtttcattttttgaaggattgcagcgtattatcttgttcact
gaagatgaaaaagttttcaaagtgtcatatgaaagtgaaaaagttgaattagcagaacaa
gaaatcattatatcgttacaagatgttggcatctctttagtagataactatttaaagcag
gaaataggttatattgggataacaagttctgatgtaatttgggagacaaaacccaagaaa
aagtcaagatggcggccactgagtttgaagcaaacagaaaaactggagaaagaatttagt
gaatactgtgatcattcaccaacagaaaataaaatagtggagctagatgataatattccg
gtctgcttgactcctactggtaataacatgaaaatattacagccaactgaaatccctgtg
agaagaagctttttgccagcattaaaagtacagtatagtacatctgaacaccaatcatcc
ttcagagtccagatttatcgaatacagatacaaaaccagattcctggagccatatttccc
tttgtgttctatcctattaaacctcccaagtccatctccttggattcagaacctaaacca
tttacagacgtcagtattgtcatgagaactgcagggcattctcagatatcacggataaag
tattttaaagtcctaattcaagaaatggatcttcgcttagatcttggtttcctttatgct
ttggctgatttctttacacttgctgatgaagtacccaaaggccaagagatagaacttttc
aaaaaggatgtcgaatcagtacaggaggagctgaaaaatgtttcatcaactgatacatca
caaatcagcttatatgaatattttcatatttctccaatcaagttacatttaagtttttca
ctcagcactgggggagaagatatcaacagggaagaaagacgtaaggatctgattccagtt
cagtctttaaatctcctgttaaagagtattggagcaacacttacagatgtgcaggatgtt
gtacttaagttggcattctttgagctcaactaccacttttatactacacagcaactgcag
tgggcagttattatgcattattcaaagcaggctataaagcaaatgtatgttcttattctt
ggactggatgttttgggcaatccatttggattcatacgagatttgtcagaaggggttgag
gcattcttctatgaaccttaccagggagctatccaaggtccagaagagtttgttgagggt
atggcactaggacttaaagccttagttggtggtgctgttggtggattagctggtgctgca
tcaagaataactggtgctatggctaaaggagtggcagccataactatggatgaagattat
caacagaagcgacgagaggccatgaataagcaacctagtggtcttaaagagggtatcact
cgtggaggaaaaggcttagtatctggttttgtcagtggaataacaggaatagtaacaaag
ccaataagaggagcacagaaagaaggagcagcaggcttcttcaaaggaattggaaaaggt
ttagtaggagcagtggcaagacccactggaggaataatagatatggcaagcagcactttt
caaggaattaaaagagctacacatgcttctaacgatgtcgtgagtctgcgtcctccccgc
ttctttagtgatgatggagttattcgaccataccgattaagagacggtgcaggaagtcaa
atgttacagaatattgaaaatggaagatttgcaaaactgagatactttgcgcatgcaatg
gttaataatacagatttgctaatggtaaccagaagtggcatattgtttgtgacaagaggt
acatttggacaattaacatgtgaatggcagtacacatatgatgaatttaccaaggagcca
ttcattgttgatggacggaggttgcgcattgaagcaaaggaacgagtaaaatctgtgttc
catgccaaagagtttgggaaaataattaattttaaaacaccatctgatgccaagtggatt
ctctctaagctggaagaagcaagggagaaccaaacaaacttatga
DBGET
integrated database retrieval system
