Sceloporus undulatus (fence lizard): 121923076
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Entry
121923076 CDS
T07740
Symbol
HELZ
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
sund
Sceloporus undulatus (fence lizard)
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sund03019
]
121923076 (HELZ)
Messenger RNA biogenesis [BR:
sund03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
121923076 (HELZ)
3'-5' decay
Other 3'-5' decay factors
121923076 (HELZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
AAA_30
UvrD-helicase
ResIII
PhoH
PAM2
zf_CCCH_4
Mov-10_helical
AAA_22
zf-CCCH_4
AAA_16
AAA_7
Bac_DnaA
MOV-10_Ig-like
AAA_5
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
121923076
NCBI-ProteinID:
XP_042309117
LinkDB
All DBs
Position
2:complement(156646723..156843967)
Genome browser
AA seq
1933 aa
AA seq
DB search
MADRRPEKSCEQACESLRQQDYEVAVKHCTEALFSLSQYPPTHFPEACQAEIDRIKIESL
LYRIASSLQLKNYGKADEDCRHVLGEGLDRERDTFRAVLCCMHLKGKLQVVSNALSKSLM
GESLNGMVTKDLTRLKTLLVETEAAVAKVPSVYHGEELEEGAQDGWQFRPPPRGVTSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELTEWQKRYASRLIRLKQQKENKQCLGSYMESLI
EKWMNSLSPEKVLSECLDGVRVEHNPELSLTVTTKKSQQMWTFALTCKPARMLYRVALLY
DAHRPHFSITTISAGDSTTQVSQEVPANCQEWIGGKMAQNGTDHSVYKISIAFRTEIFGT
FRQTVVFDFGTEPVLMQRVMIDAASTEDLEYRMNARQQLLTTAKRWDSTSKTIVEFEPNE
TTELDKSLLIRYQIPLSADQLFTQSVLDKSLTKSNYQSRLHDLLYIEEIAQYKEVSKFNI
KVQLQIVANFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVT
KEKSVLAHGTKEKVYEATIEEKTKEYIFLRIFRECCEELNLRADCEMQVELQFQLNRLPL
CEMHYALDRIKDNSILFPDVSLTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQ
LPPVLIIGPYGTGKTFTLAQAVKHILQQQDTSRILICTHSNSAADLYIKDYLHPYVEAGN
PEARPLRVYFRNRWVKTVHPVVHQYCLISSTHSTFQMPQKEDILKQRVIVVTLNTSQYLC
QLDLEPGFFTHILLDEAAQAMECETIMPLALANKNTRIVLAGDHMQLSPFVYSEFARERN
LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYP
LTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ
VFRIRAELRKKRLSDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKRKEHLLEDS
TEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHDNESLHG
ITFDQIKAQLEALELKKTYVLNPLAPEFIPRALRQQHSSNISKLQQSPPKVKGHHHNQND
HFQSDGIVQPNPSVLIGNPIRPYTPPPPPPPPPGPHPSLGKSPSPVQRIDPHTGTSILYV
PAVYGGNMVMSVPLPVPWTGYQSRFAVDPRIITHQAAMAYNVNLLQAHGRGSPIPYGLGH
HSPVSIGQQQLQHSDKEQLEQNRISKNESGTGPEINKIRTPEKKHMETKQVDLEASSQNR
SPESRSSTAYPNSKFHRKDNINPRQLNLHLTPPHTQFAVPNRHFPQLPQVPRQPYPVQQQ
QNLLSQQQNHLSEQQNQMHPQQNQIIQQHNHLNQQPQQPPSQLSPVYQTGPNQSFFKNPV
PHRPHSPGIDSMVSEHHPPSLLQEVINPQRQHNPMMPSHLNHFIEENPPGMPIGESLDRI
HGNLALETLRQQQARLQQWNEHNAYLSQGNIPYSHHHHPHLSHLSQQPIGLHQQPVRANW
KLANNIEDEPEATYSRFQDLLRELSHRDQNESRDLVEMPPPQSRLLQYRQVQPRSPPALP
TPSCNSNHSGHFPNFSENRDIEVSNNPAFQQHLPQMYNPSFTMPSEHITPPSLKYLQPDG
SWTYANIHQSHLMGQGFHYSIPPLPHRSQQNPFIQMQNHQHTVGQEPFHSLSSRAVSASS
LHSLEEYEPRGPGRPLYQRRISSSSAQACSEDLNTPQEGLGQCKELQDHSNPSSFNYSSP
EMWVNSTSSAPYQNIPCNGSNRAVPLKTAKSPEEQLKVENIQLSSSFNYNVLQHLGQFPP
LMPNKQIAESNSNSQPSAGVNKPAMSYASALRAPPKPKAPPEQAKKNSDPLSLFQELSLG
SSSGSNGFYSYFK
NT seq
5802 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagaagaccagagaagtcatgtgaacaagcatgtgaatccctcaggcagcag
gattacgaggtggcggtgaagcactgcacggaggcccttttttccctcagccagtaccct
cccactcatttcccagaagcatgtcaggctgaaatcgaccgcatcaaaatagagagtctt
ctctatagaattgcttcttctttacaactcaagaactatgggaaggcagatgaagactgt
aggcatgtattgggagaaggactggacagggaacgtgacactttccgtgcagtgctttgc
tgtatgcatcttaaagggaagctgcaggttgtatcgaatgctctttctaaatcattgatg
ggtgaatcactgaacgggatggtaactaaagatttgacgaggctcaaaacccttcttgtt
gagacagaggcagcagtcgctaaagtaccctccgtataccatggtgaagagttggaagaa
ggagctcaggatggttggcagtttcgccccccacccaggggagtcacaagtagtgaagag
tacacgttatgcaaaagatttttagagcaaggtatctgcaggtatggtgcacagtgtact
tcggcacattcccaagaagagctaacagaatggcagaaacgttatgcttctcgcttgata
agattaaaacagcagaaggaaaacaagcagtgtttaggaagttacatggaatccttgatt
gaaaaatggatgaattccttgtcgcctgagaaagtgcttagtgaatgcctagatggcgtg
agagttgaacataatcctgaactgtcacttactgtcaccaccaaaaaatcacaacagatg
tggacatttgctctcacatgtaagcctgcaagaatgctatatcgggtggcattgctttat
gatgcccatcgtcctcatttcagtatcacaacaatatctgctggcgatagcactacccag
gtatcacaagaggtcccagcaaactgccaggaatggataggaggaaagatggcccaaaat
ggaacagatcattctgtgtacaaaatcagcatagcctttagaacagaaattttcgggaca
tttcgccaaactgttgtatttgattttgggactgaaccagttttgatgcaacgagtaatg
attgatgctgcttcaacagaagatcttgaatatcggatgaatgcacgacaacagctatta
actacagccaagcgttgggattccacctctaagactattgtagaatttgagccaaatgag
actactgaattggataagagccttctgatcagataccaaattcctctttctgctgaccag
ctatttacccagtctgtcttggataagtcattgaccaagagtaactatcagtcacgactg
catgatctcctttatattgaagaaatagcacaatataaagaagtcagcaagttcaacata
aaagtgcaattgcagattgtagcaaattttatgctcactggtgtttctggaggcgcaaaa
tatgcccaaaatggacaactttttggacggtttaagctcactgaaacactgtctgaagac
actttggcagggcgactggtgatgaccaaagtcaatgctgtttatttattgccagtcact
aaagagaagtcagtactggcccatggaaccaaagagaaggtgtatgaagcaactattgaa
gaaaaaacaaaagaatatatctttctgagaatattcagggaatgctgtgaagaacttaat
cttcgagcagattgtgaaatgcaggttgaacttcagtttcagttaaaccgtttacccctc
tgtgaaatgcattatgccttggacaggatcaaggacaacagtattctctttcctgatgtc
agcttgactcccacaataccttggagccccaacagacagtgggatgaacagttggatcct
aggctcaatgccaagcagaaagaggctgttctggctatcacaactccactctcaatacag
ttgcctcctgttcttatcatcggtccctatgggacaggcaaaaccttcactttggctcag
gcagtcaaacacatactccaacagcaggatactagcaggattctcatttgcacccattct
aatagtgctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaat
cccgaggcgagacctctcagggtctattttagaaatcgctgggtaaaaactgtccaccca
gtggtgcatcagtactgtttgatttcaagcacacattccacctttcagatgccccaaaag
gaagacattcttaaacaacgagtaatagtggttactttgaatacttcacaatatctgtgt
cagctggatcttgagcctgggttttttacacatattctgttagatgaagctgcacaggca
atggagtgtgagactatcatgcctctagcactagcaaataaaaacacaagaattgtcttg
gcgggagaccatatgcaacttagtccttttgtgtacagtgaatttgccagagagagaaat
cttcacgtctcactacttgatcgtctctatgaacattaccctgcagaatttccatgcagg
atcttgctgtgtgagaactatcgctcccatgaagctatcatcaattatacttctgaactt
ttctatgagggcaaattgatggcaagtggaaaacagccagcccacaaagatttctaccct
ctgactttcttcacagcacgaggagaagatgtgcaagaaaaaaatagtactgctttttac
aacaatgctgaggtgtttgaagtagtggaacgtgttgaagaactgagaagaaagtggcca
gtagcctggggaaaattggatgatggcagtataggtgttgtaacaccatatgctgatcaa
gtgttccgaattcgggcagagcttcgaaaaaagagattgtctgatgtcagtgttgaaaga
gtgctaaatgttcagggaaagcagtttcgagtattgtttctcagcacagtacgaacacgg
catacatgcaaacacaagcaaacaccaataaaacggaaggagcatttattggaagattca
acagaagacttagattatggttttctttccaattataagcttctcaacacagccattaca
agagcacaatccttagtagctgtggtgggagatcctattgctttatgttccattggcaga
tgcaggaaattctgggaaaggtttattgccttgtgtcatgataatgaaagtctgcatggt
atcacatttgaccagatcaaagctcagttggaagctttggaattaaagaaaacctatgta
ttgaacccactggctcctgaatttattccacgggctctacgtcagcagcattcatcaaac
atcagtaaactacagcaatctccaccaaaggtgaaaggccatcatcataaccagaatgat
catttccagagtgatggaattgttcaacctaatccttctgtcttaattggaaatcctatc
agaccatatacaccaccaccacctccccctcctcctcctgggcctcatcccagtcttggg
aaatctcctagtcctgttcaaagaatagatcctcacactgggacaagcattctttatgtt
cctgctgtttatggaggaaatatggtcatgtctgtgccattgccagtaccatggactggg
tatcaaagtaggtttgccgttgatcctcgaatcattactcatcaagcagccatggcatat
aatgtgaatctcttacaagcacacggacgtggatctcctataccctatggtcttggacat
cattcaccagttagtataggacagcagcagcttcagcattcagataaagagcaacttgaa
caaaatcgtatcagcaaaaatgaatctggtacaggacctgaaatcaataaaatccggaca
ccagaaaaaaagcatatggaaaccaaacaggttgacttagaagcaagttcccaaaataga
agcccggaatcacgctccagcactgcttatcctaattccaaatttcatcgcaaagataac
attaaccccaggcagttgaatcttcaccttacccctccccatacccagtttgctgttcct
aatcgtcacttcccgcaactaccccaagttccaagacagccatatcctgtacaacagcag
caaaacctcttaagtcaacaacaaaaccatttgtctgaacagcaaaaccaaatgcatccc
caacaaaaccagattatccagcagcataatcatttaaatcagcagccacaacagccacct
tcacagctttcccctgtctatcaaacaggacccaaccagtcattctttaaaaacccagtt
ccgcacagacctcattcccctggcatagattctatggtttcagagcatcatcctccatcc
cttttacaagaagtcattaaccctcagagacagcacaatccaatgatgccctcccatttg
aaccacttcattgaagagaatcctccaggaatgcctataggagaatcattagatcgtatt
catggaaatttagctttggaaaccttaaggcaacagcaagcaagactacagcaatggaat
gagcataacgcctatctcagtcagggcaatattccttattctcaccatcaccaccctcac
ttatcccacctttctcagcagccaattggattgcatcaacagccagttagggcaaactgg
aaacttgccaacaatatagaagatgaacctgaggcaacatattcaagattccaagattta
cttcgagaactgtcacatcgtgatcaaaatgaaagcagggatcttgttgaaatgccacca
cctcagtcaagacttttgcaatacagacaagtacagcccagaagcccaccagcactcccc
acaccatcatgcaactcaaaccatagtggccattttcctaacttctctgagaacagagac
attgaagtatccaacaacccagcctttcagcaacatttgcctcagatgtacaatccatcc
tttaccatgccatctgaacacataaccccaccttccttgaaatatctgcaacctgatggg
tcatggacctatgctaatatacaccagagtcatctaatggggcaaggctttcattatagt
atacctccattgcctcatagatcacaacagaatccttttatacaaatgcagaatcatcag
cacacggttggtcaggaaccatttcactccctcagttcgcgggcagtatctgcttcttcg
ctacacagcttagaagagtatgaaccaagaggaccaggcaggccattgtaccaaagaaga
atttcatctagttcagcccaggcttgttctgaagatttaaatactcctcaagagggcctt
ggacagtgtaaagagcttcaggaccatagtaacccatcctctttcaattattcatcaccc
gaaatgtgggtaaactccacttcatcagccccatatcagaacattccatgtaatggatcc
aatagagcagttccattgaagactgccaaatcccccgaggaacagctgaaggttgaaaac
atccagttgtccagttcttttaattacaatgtgctccaacatcttggccagttccctccc
ctcatgcccaacaagcagatagctgagtccaacagcaacagccagccaagtgctggtgtt
aacaagcctgccatgtcctacgcaagtgctctgagggctcccccaaagcccaaagcccct
cctgagcaggcaaaaaagaatagcgatcctttgtctttgtttcaggaacttagtctaggt
agttcatcaggtagcaatggcttttactcctattttaaataa
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integrated database retrieval system
