Sceloporus undulatus (fence lizard): 121923140
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Entry
121923140 CDS
T07740
Symbol
COL7A1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121923140 (COL7A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
VWA_2
Kunitz_BPTI
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
DUF4992
Motif
Other DBs
NCBI-GeneID:
121923140
NCBI-ProteinID:
XP_042309216
LinkDB
All DBs
Position
2:complement(56031321..56203936)
Genome browser
AA seq
3101 aa
AA seq
DB search
MRGGVLFFAALHATLLASAQVTAQKRGRTICTNVYLADIVFLVDGSSSIGRANFRMVRSF
MEGLVVPFVNVVGENGVRFGAVQYSDDPKTEFTFSKFLNGTDVMRAVREMAYKGGNTRTG
AGLRYVADNFFGSNQLRPDVPKICILITDGKSQDEVEQAALKLKSQGIKVFAVGVKNADR
KEIDRVASTPTEDYSFYVEDFKILASLLPLVSRKVCASTGGILQTPGTQAYVGPSNLVFL
EQGTDMLRIRWTAAGGPVTGYKVQYVPLTGLGQQIVAERQEVNLGPGETSTVLRGLRAGT
DYQVTVIAQYTNIIGESVSGRGRTQTLSGVTNFRVLEAGPSFLRLSWTADLGAIQGYRLT
YAARGEAQAEEVNLGPRATSFLLSNLRPNTDYVITLYPISPRQTIAPAVVSGRTLSLSGV
QQLSAQNISSQGMLVTWRGVSGATAYRITWGLLSGQDIQTADVDPSKNSYLLTGLQPNTD
YLVTVAPVYGQVEGPKASIRRRTEIIQILRTVSVDPTSIQVAWNIIPNARGYRLEWRKAT
GVEPPKTVSLPTNENSYTLTGLQPGTEYYITLYTLYDGKEVATPVTISQTEMASVGSVSD
LRILETSGNRVRLTWTGVPGATGYKIVLRNTQDGTEKVRRIPGSQTTEDLIDLREDVSYV
VRVSALIGNREGSAVPLNIRIRPSFIGSVSNLRMVPVGPGRVRLLWTPIPRATAYRLLIV
NTQDGSEEIRQIPGDQNFFELQDLKDGITYLVRITTLSGSQESTPATLTFQVEPASVGPI
TNVEATAVGPNQLRVTWNPVAGATGYKVTWRPRDGQEISRVLPADINSYTIEGLRPGVVY
IIGVSALVGSREGNPITTTATTASGQVGMVTSLRVLESRNNVIRVTWVGVPGATAYRVVW
SRRDGGPENTELVSGNTNSFDLLNLEGGVSYTVKVTALIGNREGDPVSIIVTTPTVPVQP
VGNLRVIDSSGRRIRIEWSPAPGSTGYRLTWRLASGGPESSQLLPANINTYDIEDLQPGG
QYEIRITSFTGNRESEAVSIVANTAAAGRVTNFQVTDTQKDSVTLTWTPVPGVSGYLLIW
KSLRDGRETQRTLPGSATSHQVSGLRLGERYTFTIRPLFGSITGPETSLTDRTVCRDGRS
DIVFLVHTTRDTAYNAEAVKSFLSNTVSSLGQLGPGAHQVGIVVYSNRGLPFLLLNRSSD
LATVLQNIRSLRYEEPSGNAVGAAINFAKNYMLSPSAGRRTGVPGTLVIMTDGPSGDDAI
GPSREVKAAGIQVLAVGMDGANREQLRQLVTSEDPRNVFFVRDSKSLPEVEEGLASALCR
LSVTEGPRPEPCTVQCPRGEKGEPGEIGQKGRMGLPGTPGNPGRNGLPGPPGPVGPRGPP
GDVTDRRGEKGDRGFPGTDGSPGNPGRPGNPGPPGQQGGPGLPGLRGIPGERGLIGPIGP
KGEKGEPGDPGEVVGGGGGVPGRKGEPGNPGNPGPPGNPGPRGPFGDPGPPGPVGPAGPT
GPAGEFVKGEKGERGERGPPGSGDGAAVRGEPGTPGLPGDPGPRGSPGPPGQKGDKGEGE
EGFPGPPGRAGDPGDRGPRGPPGEQGNKGDRGQPGEIGPSGEKGERGSPGPEGEKGEQGP
AGRPGPAGRDGLSGPPGPRGERGEQGEPGVPGKPGSSLSGIKGDKGETGSAGPEGLPGPR
GDTGNKGERGPPGFSAPGPPGPKGEQGDRGIVGLTGKTGSKGDPGEPGERGEPGRPGPAG
QTGPRGKEGERGDKGEEGTSGEPGPAGKPGDRGLRGLPGNRGLPGEKGDQGDPGEDGRNG
SPGSKGDRGDPGPPGPPGQTIGAGGAGGAQKGEKGEPGDPGEDGMKGVKGEAGLPGLTGE
RGLEGSRGLPGIRGDPGDRGPVGEKGDRGPPGLDGRNGLDGKPGQTGPAGQRGDPGKQGE
PGRDGLPGLRGEQGPPGATGPPGPPGLPGKPGDDGKPGLNGKNGEDGTPGEDGRKGDKGD
PGAPGRDGREGIKGERGTIGPPGPSGPPGVPGVPGLVGPPGQSLPGLPGTSGPKGDRGES
GSKGEKGIMGEPGPRGDPGTAQNVERALEIYGIKISSLREITGAYDGSSDQFLPVPDRRR
FFKGDRGDPGERGPPGKEGLIGFPGERGLKGDKGDQGPPGPQGPTGRAIGERGPEGQPGQ
PGEPGKPGIPGVPGRVGELGEAGRPGEKGDRGEKGGQGEPGRDGSPGPPGPPGPKIDVTD
GSLPGFPGERGPPGPKGSKGEPGEDGERGSRGDKGETGQKGERGEAGDKGRDGSPGLPGD
RGLPGPEGKAGLPGFPGVLGRPGNQGDPGPPGPPGPVGPPGTQGLPGKKGDAGEPGSSIR
GLPGPQGNVGLPGAPGTPGLVGPQGPPGLPGQVGESGKPGIPGRDGVPGKEGKTGLPGEM
GIRGPVGPAGPKGEPGDAGPPGQTAIGPPGIKGEKGEPGDFDGEIFGKPGAKGDRGLPGP
RGEKGEPGNQGEPGDPGEDGAKGSSGIKGEKGSLGIGLEGPPGQTGPPGLKGDPGSPGPP
GPSGVPGVAGTPGQPGLRGENGLIGQPGPPGERGLIGFPGRDGTAGSPGPPGPPGSSGAQ
GIPGAKGDKGDTGVGQPGARGERGDPGPRGEDGRPGLEGDRGPAGPPGNRGERGDKGDVG
LMGPKGDKGDTAIVEGPPGARGNKGEPGDRGLKGMEGDKGDKGDQGIPGEKGVRGEQGEK
GSTGFPGARGPGGQKGEVGESGEPGEPGLPGKDGIPGTRGEKGDMGPIGMRGPKGERGMK
GACGQDGDKGEKGEPGLPGRMGTAGRKGDPGEMGMPGTPGIPGKEGLIGPKGDRGFDGQQ
GPKGDQGEKGDRGTPGIIGSPGPRGNDGPPGPLGPPGSIGPKGPEGIQGQKGERGPPGQS
VAGPQGIPGMTGERGEQGSPGFDGPKGERGEPGMTEEEIRLFVRQEMSQHCACGGQFSAP
ERRLIPNYPSTQPFPSVNAQIVPVLTLSHTEEEEGGQVQKIVETGEPEYEYFYTEEEEDY
EEGLGADGTESPMLRDEVKGPRAAPKHGRQKRAPPEEGNLCALPLDEGNCSRYTLKWYYN
QRVSECRPFIYSGCRGNRNRFSSKEECELQCKPQRDAGGRT
NT seq
9306 nt
NT seq
+upstream
nt +downstream
nt
atgagagggggcgtgctgttcttcgccgcgctccatgccacacttcttgcttcagcacaa
gttacagctcagaaaagggggagaacaatctgcaccaatgtttacttggctgacattgta
ttcctggtggatggatcctctagcattggaagagcaaacttccgcatggtccggtctttc
atggaagggctggttgttccttttgtcaatgtcgtgggtgagaatggggtgcgctttgga
gctgtacagtatagtgatgatcccaaaacggagttcacattctccaagttcctcaatggc
acggacgtgatgagggctgtccgagagatggcctacaaaggtggaaatacgcgcacgggt
gcaggtctccgttatgtggcagacaatttctttggatccaatcagctgcggcctgatgtt
ccaaagatatgcatcctcataacagatggaaagtctcaggacgaggttgagcaggcagca
ctgaaactgaagagtcaagggattaaagtctttgctgtgggtgtgaagaatgcagaccgc
aaagagattgacagagtggcctccacgcccacagaagattattccttctatgttgaagat
tttaaaattctggcatctctgctgccattggtgtcccggaaggtgtgtgccagcacaggc
ggcatcctacagactccaggcacacaagcatatgttggcccttcaaacctggtctttttg
gagcaaggtacagacatgctgagaatccgctggactgcagctggtggtcctgtcacaggc
tataaagttcagtatgtgcctcttacaggcctggggcaacaaatcgtggctgaaaggcag
gaggttaatttgggacctggtgaaacgagtactgtgctccgtggtttgagggcagggaca
gattaccaagtcacagttattgcccagtataccaacatcattggagaatcagtttccggc
agaggacgtactcagaccctttctggagtgacaaattttcgggtgttagaagcaggacca
tccttccttcgactctcctggacagctgatctgggtgccatacagggctacagactcact
tatgcagccagaggtgaggctcaggctgaagaggtgaatcttggacccagagctacatca
ttcttgctcagcaaccttcgcccgaacactgactatgtgatcacactctatcccatctcc
ccacggcagacaatagcacctgctgtggttagtggccgaacattgagtctgtcaggagtg
caacaactgtctgcccagaacatctcctcccagggcatgctggtgacctggcggggtgtg
agtggagcaacagcatatcgtattacttggggactcctctcaggtcaggatattcagaca
gctgatgtggatcccagcaagaattcttatttattgactggcctgcagcccaacactgat
tacctcgtgactgttgctccagtctatggccaagtggaagggcccaaggcatccattaga
aggagaactgaaataatccagattttgaggacagtcagtgttgacccaacatcaattcag
gtggcttggaatatcatccctaatgcccggggatatcggctggagtggagaaaagcaaca
ggtgtggaaccccccaagactgtgtccctgcctaccaatgagaacagttatactttgaca
ggcctgcaaccaggcactgaatattatatcaccctctacactttgtatgatggcaaggaa
gtggccacaccagttaccatctcacagacagagatggcatcagtgggcagtgtctctgac
ttaaggatccttgagacctcaggaaacagagtccgattgacatggacgggtgtcccagga
gccacaggatataagattgtgctacgcaatacccaggatggcactgagaaggttcggcgt
atcccaggctcacagacaaccgaggacctgattgatctaagagaagatgtctcctatgtg
gtgcgtgtatcagctctaattggcaatcgtgagggcagtgctgttcctctcaacatccga
atccggccatcattcataggcagtgtgtctaacctgcgcatggtgccagtggggccaggc
cgtgtccggttgttgtggactcccatccccagggctactgcttacagactattgattgtc
aacacccaagatggctctgaggagatcagacaaatccctggtgaccaaaatttttttgaa
cttcaagacctgaaggatggcatcacatacctggtgcgaataacaacactgtcaggcagc
caagagagcacaccagccacccttactttccaagtggaacctgcatctgtgggccccatc
accaatgtggaggcaactgcagtaggacccaatcaactgcgagtgacatggaatccagtt
gctggcgcaacaggctataaggtgacatggcggccaagagatggccaggagatctcacga
gtcctgcctgctgatataaactcctacactattgagggtctgaggcctggagtggtctat
atcattggggtctcagccttggttggcagcagagaagggaatccaatcaccactacagct
acaacagcttctggtcaagtgggtatggtcaccagccttagagtccttgaatccaggaac
aatgtcatacgagtcacgtgggttggtgtgcctggggctacagcgtacagagtggtgtgg
agccggcgtgatggtggacctgaaaacactgaattggtctcgggaaacaccaattctttt
gacttgcttaacctggaaggaggagttagctacacagtgaaggtcacagcactgattggc
aaccgtgaaggagaccctgtgtccatcattgtcaccacaccaacagtcccagttcagcca
gttgggaatctacgtgtgattgattcttcaggaagacggatccgaatagaatggagccca
gcacctggtagcacaggctatcggcttacctggagactagccagtggcggaccagagagt
agccagctgctgccagccaacatcaacacatacgacattgaagatttgcagccaggaggg
caatacgaaattcgtatcacaagcttcacaggcaacagggagagtgaagctgtgtctatt
gttgccaatacagctgctgcaggccgtgtgaccaatttccaggtgacagacactcaaaag
gattctgtgacattgacctggactccagttcctggggtctctggctatctcctcatatgg
aagtctttaagagatgggagagaaacacaaagaacactgcctgggtcagcaacatcccat
caagtatctgggctgcgcttgggtgagagatacacctttactatccgcccactgtttggg
agcattacaggtcctgagacttctcttactgaccgtacagtttgtcgagatggccgcagt
gacattgtttttcttgtacatacaactcgagacactgcctacaatgcagaggctgtgaaa
agctttttgtccaacactgtatcttctctgggccaactgggccctggagcccaccaggta
ggcattgtggtttacagcaacagaggcctcccatttcttctgctcaaccgctctagtgac
ttggcaactgtcctgcagaatatccgctctttacgctatgaggagccaagtggcaatgct
gttggagcagctattaattttgccaagaactacatgctcagtccaagtgcagggcgcaga
actggtgtaccaggaaccttggtgataatgacagatgggccgtctggtgatgatgccatt
ggaccatctagagaggttaaggctgcagggatccaggtgctggcagtgggcatggatggg
gccaatcgtgagcagctgcgccagctggtaaccagtgaagatccacgcaatgttttcttt
gtgagagactcaaagagtttgccagaggtggaagaggggcttgccagtgccctctgcagg
ttatcagtcacagaagggcctagaccagagccatgtacagtacagtgtcccaggggtgaa
aaaggcgagcctggtgagattggacagaaaggacgcatgggacttcccggaactcctgga
aatccgggacgcaatgggctcccaggtcctccaggcccagtgggacctcgggggcctcca
ggtgatgtcactgatcggcggggtgagaagggagacaggggattcccaggaacagatgga
tcaccaggaaatcctggtcgacctggcaatcctggtcctcctggtcaacaaggtggccct
ggccttcctggtctcagaggaatcccaggagaacgtggactaattggcccaattggccca
aagggagagaagggtgagccgggagatcctggagaggttgtcggtggaggaggcggggtt
cctggccggaagggagagcctggcaacccaggtaatcctggacctcctggaaatccaggg
cctaggggaccatttggtgatcctggcccccctggacctgtgggacctgctgggccaaca
gggcctgctggcgagtttgtcaagggagagaagggcgagcgaggtgagcgaggccctcct
ggatcaggtgatggggctgcggtcagaggagaaccaggcaccccaggtttgcctggagat
cctgggcccagaggatctcctggtcccccagggcagaagggtgacaagggggaaggagaa
gaagggtttcctgggccacctggacgtgctggagatccaggagatcgggggcctagagga
cctccaggtgaacaaggaaacaagggagaccgtgggcaacctggtgagattggaccatca
ggagagaagggagaacgtggatcacctggccctgaaggagagaagggagaacaaggacct
gctggccgccctggtccagcaggcagagatggcttgtcaggacctcctgggcctcgaggg
gaaaggggagagcaaggagagcctggtgtgcctgggaaaccaggtagcagtctttcagga
atcaaaggagataagggggagacaggctctgcaggaccagaggggctgcctggtccaaga
ggggacactggaaacaaaggagaacgtggacctccaggattcagtgcccctggcccacct
ggtccaaaaggagaacaaggggacaggggcatcgttggactaactggtaaaactggctca
aagggtgacccaggagaacccggggagaggggagagccaggaagaccagggcctgctgga
cagactggcccacgaggaaaagagggtgaaagaggtgacaagggagaggaaggaacctca
ggtgagccaggtccagctggtaaaccaggagacagaggactacggggtctaccagggaac
cgagggctccctggtgagaagggggaccagggggacccaggtgaagatgggagaaacggc
agtcctgggtcaaagggagaccgaggagatcctgggccaccaggacctccaggccaaaca
attggtgcaggaggtgcaggaggagcgcagaaaggcgagaagggggagccaggagaccct
ggagaagatgggatgaaaggtgtgaaaggagaggctggtttacctgggctgacaggagaa
cgaggacttgaaggttccagaggcctccctggaattcgtggtgaccccggagatcgaggc
ccagtaggagagaagggtgaccgaggtcctccaggtttagatggtcggaatggattagat
ggaaagcctgggcaaacgggtcctgcaggccaaaggggtgacccaggaaagcagggtgaa
cctggtcgagatggtctcccaggtctacgtggtgagcagggtcctcctggagcaactggt
cccccaggaccaccagggctgcctggaaagcctggtgatgatggcaaacctggcctgaat
ggaaagaatggtgaagatggaacacctggagaagatgggaggaagggggacaaaggtgat
ccaggggcacctggcagagatggacgggaaggtattaaaggagagcgagggactattgga
cctcctgggccctcagggcctccgggtgtccctggtgtccctggactcgttggtccacca
ggccagagtttaccaggtctccctgggacatctggaccaaagggagacagaggggagtct
ggatctaaaggagagaaggggataatgggtgagcctgggccacgaggagaccctggcaca
gcacagaatgttgagcgtgccttagaaatctacggtatcaagatttcttcactgcgagag
atcactggtgcttatgatgggagttctgaccaattcctgcctgtccctgatcgccggaga
ttcttcaagggtgacagaggagatccaggtgaaagaggaccaccaggcaaagagggactt
attggcttccctggagaaaggggtctgaagggggataagggagaccaaggcccaccaggc
ccacaaggcccaacaggacgagccattggagagcggggaccagaaggacaacccggccag
ccaggggagcctgggaaaccaggaattccaggtgtgccaggccgtgtgggagaacttgga
gaggctggcaggcctggagagaagggtgatcgtggtgaaaaaggtggacagggagagcca
ggcagagatggctcacctgggccaccagggccaccaggacccaagatagatgtaacagat
ggaagcctcccaggctttccaggagaacgtggcccaccaggacccaagggaagcaaggga
gagccaggagaagatggcgagagaggctctagaggcgataagggtgaaactggccagaag
ggagaaagaggtgaagctggtgacaaaggcagggatggctctccaggacttccaggagac
aggggccttccaggcccagaagggaaagctggcttgccaggcttccctggagttctgggc
agaccgggtaaccaaggagatcctggaccaccaggccctcctggtcctgttggccctcca
ggcactcaaggtctacctggaaaaaagggagatgctggagaacctggttccagcattcgg
ggcttaccaggtcctcaagggaatgttggactcccaggagcaccaggaactccagggctt
gtgggtccacaaggccctccagggttaccaggacaagtgggtgagtctggaaaaccaggt
ataccaggcagagatggagtgccagggaaagaagggaaaactggactgcctggggaaatg
ggtatccgaggacctgtaggacctgctggccccaaaggagaacctggggatgctggacct
ccgggacagactgctattgggcctccaggcataaaaggcgagaagggtgaaccaggtgat
tttgatggagaaatttttggaaaaccgggtgccaaaggtgatcgaggtctacctggccct
cgaggagagaagggtgaacctggcaatcagggggaacctggagatcccggagaagatgga
gctaaaggatcttctggaatcaaaggagaaaagggttcacttgggattggccttgaagga
ccccctggtcagactggacctccaggcttgaagggagatcctgggtcacctggaccacca
ggaccctcaggtgtgccaggtgtggctgggactccaggccagccaggcctgagaggagag
aatgggctgattggtcaaccaggacctccaggggagaggggtcttattggcttccctggg
agagatggcactgcaggatctccaggaccccctggaccaccaggatcatcaggtgcacaa
ggcatccctggagcgaaaggtgacaagggggacacaggggttggacagccaggtgctaga
ggagaacgaggagatccaggtccacgtggtgaagatgggcgcccagggctggagggagac
cgtggtcctgcagggcctccaggaaaccgaggggaaagaggtgataagggagatgttggg
ctcatggggccaaaaggagacaaaggtgatactgctattgtggaaggcccaccaggtgct
cgggggaacaaaggcgaaccaggagatcgtggcctgaaagggatggaaggagacaaagga
gacaaaggagaccagggcatccctggagagaagggagtaagaggtgaacagggagagaaa
ggctcaacaggttttccaggtgcacgtggtcctggtgggcaaaagggagaagttggtgag
tcaggggagccaggggagccgggtctacctggaaaggatggtattccaggaaccagaggg
gaaaaaggagacatgggacccattggaatgcgtggcccaaagggagagagaggaatgaaa
ggagcctgtggccaagatggagataaaggtgagaagggagagccaggtctgccaggccga
atgggaactgctggaaggaaaggtgaccctggtgagatgggcatgcctggaaccccagga
atccctggaaaagaaggtctcataggacccaagggtgacaggggatttgatggccagcaa
ggacccaaaggagaccaaggagaaaagggggacaggggtactccaggcattattggttcc
ccgggaccaagaggaaatgatggacctcctgggccccttggacctcctggcagcatagga
ccaaaaggcccagaaggcattcaggggcagaaaggggagagagggcccccaggacagtca
gttgcagggccacaaggaattccaggtatgacaggagaaagaggagaacagggaagccca
gggtttgatggacccaaaggcgagagaggagaacctggcatgacggaagaagagatccga
ctctttgtcaggcaggagatgagtcagcactgtgcttgtggaggccagttctctgctcct
gaacgacgtcttatacccaactatccatccacccaaccgttcccgtctgttaatgctcaa
atagtccctgtgcttacgttgtcccacactgaggaagaggaagggggccaggtgcaaaaa
atagtggagacaggtgagcctgaatatgagtacttctacacagaggaagaggaggactac
gaagagggcctgggagcagatgggacagagagtcctatgctgagggatgaagtaaagggc
ccaagggcagctcccaagcatggacggcaaaagagagctcctcctgaggaagggaatcta
tgtgccttgccactggacgaaggaaactgcagcagatacacactaaagtggtactataac
caaagagtatcggagtgccggcccttcatctacagtggttgtaggggaaatcgcaaccgc
ttcagctccaaggaggagtgtgagcttcaatgcaagccacagagagatgcaggtggcaga
acatag
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integrated database retrieval system
