Sceloporus undulatus (fence lizard): 121923408
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Entry
121923408 CDS
T07740
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121923408 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sund03019
]
121923408 (MTREX)
03041 Spliceosome [BR:
sund03041
]
121923408 (MTREX)
03009 Ribosome biogenesis [BR:
sund03009
]
121923408 (MTREX)
03016 Transfer RNA biogenesis [BR:
sund03016
]
121923408 (MTREX)
Enzymes [BR:
sund01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121923408 (MTREX)
Messenger RNA biogenesis [BR:
sund03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121923408 (MTREX)
Spliceosome [BR:
sund03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121923408 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
121923408 (MTREX)
Ribosome biogenesis [BR:
sund03009
]
Eukaryotic type
Pre-60S particles
Helicases
121923408 (MTREX)
Transfer RNA biogenesis [BR:
sund03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121923408 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
121923408
NCBI-ProteinID:
XP_042309747
LinkDB
All DBs
Position
2:complement(301030172..301088253)
Genome browser
AA seq
1042 aa
AA seq
DB search
MAEAFGDELFSVFEEDPAASSGSKKAKGGPEAAAAAAAPEGKAGKRSNGKSAAAAAKFPA
KTKRDEEVDHVDLTVLGKKPKLEDFTTEDLNLTDLMPQVKVQAVETVEGCTHEVALPADE
DFIALKPRTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIAMALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVNRLEHQYNEIEIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEDDDFGWGVVVNFSKKSNVKPNSGELDPLYVIEVLLHCSKDSLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIKDPGLKKVIQKTEAFEHRMYSHPLHNDSNLETVYKLCERKAQIAVDIKAAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLN
SFRPNLMDVVHTWANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcgttcggggacgagctcttcagcgttttcgaggaggatcccgccgcttcc
tcgggctccaagaaagccaagggcggccccgaggcagccgccgccgctgctgctcccgag
ggcaaagccgggaagagatccaatggcaagtctgcagcagcagccgctaaattcccagca
aagacgaaaagagacgaagaagttgatcatgtagacctgaccgttttggggaagaagcca
aagttggaagatttcaccacggaagatctcaatttgacagatctgatgccacaagtaaaa
gtgcaggcagtagaaactgtggaaggctgtacacatgaggttgctcttcctgcagatgaa
gactttatagccctaaagccaagaactggaaaagctgcaaaggaatatccattcattctt
gatgcttttcaaagagaagctattttgtgtgtggataataatcagtcagttttagtgtct
gctcatacatcagcaggaaaaacagtgtgtgcagagtatgccattgcaatggctttgagg
gagaaacagcgtgtgatctttaccagtccaattaaagcactaagtaaccagaaatatcgt
gagatgtatgaagaatttcaagatgttggtttgatgactggagatgtcactatcaatcct
acagcatcttgccttgtaatgacaacagaaattttgagaagtatgctttacagaggttct
gaggtcatgcgtgaagttgcttgggttatatttgacgaaattcattacatgagagattca
gaacgtggtgtggtatgggaagaaaccattattttgctcccagacaatgttcattatgtg
tttctttctgccactattcccaatgcacgccagtttgctgaatggatatgccatcttcac
aaacagccttgtcatgtgatctacacagattatcgacccactcctctgcaacactatatc
ttcccagcagggggagatggacttcacctagtggttgatgaaaacggtgattttagggaa
gataattttaacacagctatgcaagtacttcgagatgcaggtgacttagccaaaggagac
cagaaaggcaggaaaggaggaacaaaaggtccctccaatgtatttaagattgtaaagatg
atcatggaaagaaacttccagcctgtaattatattcagtttcagtaaaaaagattgtgaa
gcatatgcacttcagatgacaaaattggacttcaatacagatgaagaaaaaaagatggtt
gaggaagtatttaataatgcaattgactgtttatctgatgaggacaaaaaacttcctcaa
gttgagcacgtacttccacttctaaagcgaggcattggaattcaccatggaggtttgctt
cctattcttaaggaaacgatagagatacttttctctgaaggactgataaaggcattattt
gcaacagagacttttgctatgggaataaacatgccagcaaggacagtgctgttcacaagt
gcccggaaatttgatgggaaagactttcgatggatcacctcaggtgaatatattcagatg
tctggacgtgctggacgtcgtggcatggatgatagagggatagtaattcttatggtggat
gagaagatgagcccaactgttggaaaacagcttctgaagggatctgctgacccactgaac
agtgctttccatttgacatacaatatggtattaaatttgctgcgtgtagaagaaattaac
ccagaatacatgttagaaaagtctttttaccaattccagcattacagagctattccagga
gtagttgaaaaggtgaataggctggaacaccagtacaatgaaattgaaattccaaacgag
gaaaatgtggtcatctactataaaatcagacaacagcttgctaaactgggtaaagaaata
gaagaatacattcataagccaaagtactgcttaccatttttacaacctggaagactagta
aaagtgaaaaatgaagatgatgattttggctggggagtggtggtaaatttctctaagaaa
tcaaatgttaagcccaactctggtgaattggacccactttatgttattgaagtcctcctg
cactgtagcaaagacagcttgaaaaattctgcaactgaggctgcaaagccagcaaaacct
gatgagaagggggagatgcaggttgttcctgttctggtgcatcttctgtcagcaatcagt
agtgttcgactttatataccaaaagacttaaggccacttgataatagacaaagtgtactg
aagtccatacaggaagtacaaaaacgatttcctgatggagttcctttgctggatcctatt
gatgacatgggcataaaagatcctggtctgaaaaaagtaatccaaaaaacagaagcattt
gagcatagaatgtattctcatccacttcacaatgattctaatttggaaactgtgtataaa
ctttgtgaacgaaaagcacagattgctgtagacattaaagcagcaaaacgggagttgaag
aaagctaggactgttttacaaatggatgaactcaagtgtcgtaagcgggttttgagaagg
ttgggttttgcaacgtcttctgatgtcatagagatgaaaggacgagttgcctgtgaaatt
agcagtgcagacgagttgctgctgacagaaatgatgttcaatgggttattcaatgattta
tctgcagaacaagcaactgctttactaagctgttttgtatttcaagaaaattccagtgaa
atgccaaaactcacagaacagttggcaggccctctccgccaaatgcaggaatgtgcaaaa
agaattgctaaagtatcagcagaagcgaaactggaaattgatgaggaaacctatctcaat
tcttttagaccaaacttgatggatgtggtgcacacatgggctaatggagctacatttgct
cacatatgcaaaatgacagatgtatttgaaggaagcataattcgatgtatgaggaggcta
gaagaattgcttcggcaaatgtgccaggcagcaaaggccattggaaacacagaactggag
aataaatttgcagaaggcattactaaaatcaagagagacatagtatttgctgcaagtctt
tacctataa
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