Sceloporus undulatus (fence lizard): 121924875
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Entry
121924875 CDS
T07740
Symbol
HMGB1
Name
(RefSeq) high mobility group protein B1
KO
K10802
high mobility group protein B1
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03410
Base excision repair
sund04140
Autophagy - animal
sund04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121924875 (HMGB1)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121924875 (HMGB1)
09143 Cell growth and death
04217 Necroptosis
121924875 (HMGB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sund03036
]
121924875 (HMGB1)
03400 DNA repair and recombination proteins [BR:
sund03400
]
121924875 (HMGB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sund04147
]
121924875 (HMGB1)
Chromosome and associated proteins [BR:
sund03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
121924875 (HMGB1)
DNA repair and recombination proteins [BR:
sund03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
121924875 (HMGB1)
MMR (mismatch excision repair)
Other MMR factors
121924875 (HMGB1)
Exosome [BR:
sund04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
121924875 (HMGB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
HMG_box_5
NOA36
DH_2
Motif
Other DBs
NCBI-GeneID:
121924875
NCBI-ProteinID:
XP_042312314
LinkDB
All DBs
Position
3:complement(33226500..33239514)
Genome browser
AA seq
213 aa
AA seq
DB search
MGKGDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMARADKVRYEREMKTYIPPKGESKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
SIGDVAKKLGEMWNNTPADDKQPFEKKAAKLKEKYEKDIAAYRAKGKPEVAKKLAPKPEK
SKKKEEEDEDEEEDEEDEEDEEEEDEEEEEDDE
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggtgatcctaaaaagccaagaggtaaaatgtcctcatatgcctactttgtg
caaacttgtcgggaagaacacaagaagaaacatccagatgcttcagtgaacttttcagag
ttctcaaaaaaatgctcagaaaggtggaagactatgtctgctaaggagaaaggaaagttt
gaagatatggcacgagctgacaaggttcgttatgaaagagaaatgaaaacttacatacca
ccaaaaggcgagtcaaaaaagaagttcaaggacccaaatgcaccaaagagacctccttca
gcatttttcttgttctgctctgagtatcgtccaaaaatcaaaggagaacatcctggtctt
tctatcggggatgttgcaaagaaacttggagagatgtggaataatactcctgcagatgat
aagcagccctttgaaaaaaaggcagctaaactgaaagagaagtatgaaaaggatattgct
gcatacagggctaaagggaagcctgaagtagccaaaaaattagctccaaagcctgagaaa
agcaagaaaaaggaggaagaggatgaggatgaagaggaggatgaagaggacgaagaagat
gaggaggaagaagatgaggaggaagaagaagatgatgaataa
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