Sceloporus undulatus (fence lizard): 121925047
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Entry
121925047 CDS
T07740
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121925047 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sund03021
]
121925047 (TAF5)
03036 Chromosome and associated proteins [BR:
sund03036
]
121925047 (TAF5)
Transcription machinery [BR:
sund03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121925047 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
121925047 (TAF5)
Chromosome and associated proteins [BR:
sund03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121925047 (TAF5)
STAGA complex
121925047 (TAF5)
TFTC complex
121925047 (TAF5)
SAGA complex
121925047 (TAF5)
SLIK complex
121925047 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
NBCH_WD40
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_SPT8
WD40_like
VPS8_N
eIF2A
RAB3GAP2_N
VID27
Motif
Other DBs
NCBI-GeneID:
121925047
NCBI-ProteinID:
XP_042312699
LinkDB
All DBs
Position
3:complement(209316086..209336477)
Genome browser
AA seq
787 aa
AA seq
DB search
MAALAEEQQQPLPPEAVAVKPDPDAGAAPAPAPPSAAESPSPSSSPAAAAAAAGSLPSDG
EPLAGAVDAKPPPPLPPAKAPSPAPQGPTDRQTLLAVLHFLRRSNLRESEEILRKEAQLL
AEEADAAAAAAASAALGGEGAEAGELLLLGSVSSGGAASGPNANAAAANAAPAKVGVLVE
DQPDVSAVLSAYNQQGDPALYEEYYSGLKQFIECALDCHRAELSQLFYPLFVHMYLELVY
NGHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMRGNETMLDFRTSKFVLRISRDS
YQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKAKVF
FGLLKEPEIEFPLDDEDEEGENEEGKPKKKKPRKDSTGSKSKKQDPNAPPQNRIPLPELK
DSDKLDKIMNMKEATKRVRLGPDCLPSICFYTFLNAYQGLTAVDITDDSSMIVGGFADST
VRVWSVTPKKLRSVKSAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGTSFSP
DRNYLLSSSEDGTIRLWSLLTFSCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWA
TDHYQPLRIFAGHLADVTCTRFHPNSNYIATGSADRTVRLWDVLNGNCVRIFTGHKGPIH
SLAFSPNGKFLATGATDGRVLLWDIGHGLMVGELKGHTDTIYALKFSRDGEILASGSMDN
TVKLWDAVKAFEDLETDDFTTATGHINLPESSQDLLLGTYMTKSTPVTHLHFTRRNLLLA
AGAYGSQ
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atggcggctctggcggaggagcagcagcagccgctgccgccggaggcggtggcggtgaag
ccggacccggacgcaggagcagcgccagcgccagcgccgccttccgccgccgagtctccg
tcgccgtcctcctcccccgcggcggcggcggcggcggcaggctctctgcccagcgacggg
gagcccttggcgggagccgtggacgccaagccccctcctcctctccctccggcgaaggct
cccagcccggcccctcaggggcccaccgaccggcagacgctgctggccgtgctccacttc
ctcaggcgcagcaacctccgcgagtccgaggagatcctccgcaaggaagcccagctgctg
gccgaggaagcggacgccgccgccgcagcagcagcctcggcagccctcggaggggaaggg
gccgaggccggggagctgctgcttctgggctccgtgtcttccggaggggcagcctcggga
cccaacgccaacgccgccgctgccaacgccgcccccgccaaagttggcgtccttgtggaa
gatcaaccagatgtgagtgcagtgttgtctgcctacaatcaacaaggagacccagcactt
tatgaagagtactacagtggactaaaacaattcattgaatgtgctttggactgtcatcga
gcggagttatcacagcttttttaccctctctttgtacacatgtacttggaactagtctac
aatggacatgaaaatgaagcaaagtcattcttcgaaaaatttcatggggatcaggaatgt
tattaccaagatgacttacgtgtcttatcaagtttaaccaaaaaagagcatatgagagga
aatgagacaatgctggatttccgaacaagcaagtttgtgcttcgcatttcccgtgactct
tatcagctcttgaaaagacaccttcaggaaaaacagaacaatcagatctggaatattgtt
caagaacatctttacattgatatttttgatggaatgcctcgcagtaaacaacagatagat
gctatggtaggaagtttggcaggagaggcgaaacgagaggctaataaagcaaaggtcttt
tttggcttattgaaagagccagaaattgagtttcctttggatgatgaagatgaagagggg
gaaaatgaggagggaaaaccaaagaagaagaagccaagaaaagatagcactggatcaaaa
agtaaaaagcaagacccaaatgctcctcctcagaatagaatcccccttcctgagctgaag
gactctgataagctggataaaataatgaatatgaaggaagctactaagcgtgtacgtctt
ggtcctgactgcttgccgtccatttgtttttacacattccttaatgcatatcagggcctg
acagcagtggacattacagatgattctagcatgattgttggaggctttgctgactctact
gtcagagtatggtctgtaacacccaaaaagctacgcagtgtgaaatcagcagcagatctc
agtctcatagataaagaatctgatgacgttttagaaaggatcatggatgaaaaaacagca
agtgagttgaagattttatatggtcacagtggacctgtctatggtaccagcttcagccct
gataggaactacttgctgtcatcttcagaggatggcactatccgattgtggagtctctta
accttttcttgtttggtgggctacaaaggacacaactaccctgtatgggacacacaattc
tctccatatggatattactttgtttctggtggtcatgacagagtggctcgtttgtgggct
actgatcactaccagcctttacggatctttgctggccatcttgctgatgtcacatgtaca
cgttttcacccaaactcaaactacattgctacaggctcggcagatagaactgtgcggctt
tgggatgttctgaatgggaattgtgtaagaatctttacaggacataagggacctatacat
tccttagcattttctcctaatggaaaattcttggcaacgggggcaacagatggaagagtg
cttctgtgggatattggccatggcttgatggtaggagagttaaaaggacatacagacaca
atctatgcactcaaattcagtagagatggagagatcttagcctcagggtcaatggataac
acagtaaagctatgggatgctgtgaaagcctttgaagacttagaaacagatgattttact
actgccactggacatataaacctgcctgaaagctctcaggacttgttgttgggtacatac
atgaccaaatcaacccctgtcacacacctccattttacccgcagaaatttgcttcttgct
gctggcgcatatggttctcagtga
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integrated database retrieval system
