Sceloporus undulatus (fence lizard): 121928497
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Entry
121928497 CDS
T07740
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121928497 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sund03019
]
121928497 (PNLDC1)
Enzymes [BR:
sund01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121928497 (PNLDC1)
Messenger RNA biogenesis [BR:
sund03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121928497 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
121928497
NCBI-ProteinID:
XP_042319221
LinkDB
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Position
1:complement(79689792..79719018)
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AA seq
530 aa
AA seq
DB search
MDVGAGEFEEKLPRLQELILGCDFVGLDMEFTGLHSSLLDRQLSLFDSPAEWYRKARQNV
QQFAVSQLGLSIFCHETSNSYVAHSYNFFLFPITFGQMDSEFSFQASSIQFLSHYGFDYN
KFLKDGIPYMNETQEKRFEHLLPGSSMVHSGFGKDKLKKVIEEVTCWVSSAEEKDCLVLH
DLYGFQMFEIQLILRHAIKDIWTIPLEGHEVLVKKMDPRQRWLLENTSYDSCQKEQILLC
ARGFTNLFQTLVKAKKPLVGHNMLMDLLHLHEKFYNPLPENYEEFKKNMHTLFPVLLDTK
NIAKATWKKFQFPQASTLLEVYEVLCSAINTTNQSCPEIFHSRNCLRYATKKCPHEAAYD
AFLCGSVLLKIAHLILCNISCDQTKTAQSFPQYLGVLSPYVNQVNLIRGGVQKINFSGMD
DSTKHLPLLIANVHGWPGVNEEQIHQELRIFCNFDVRWLRMNQFLLLSNRFRDVRVVLEE
YKNHPNLQISVYHHWRHSPQVNCFLKICGIVASWSLLAFLLGGCSNCVVK
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgggagcgggggagtttgaggaaaagctgcccaggctccaggaactcattctt
ggctgtgactttgttggacttgacatggaattcacaggtttacattcaagcttactagat
agacagctcagtctttttgattcccctgctgagtggtatcgaaaagccagacagaacgta
caacagtttgccgtgagtcagcttggtttgtcaatattttgccatgaaacatcaaattcg
tatgtggcccattcatataactttttcctcttccccataacattcggccaaatggactct
gaattttctttccaagcatccagcattcagttcttgtctcactatggttttgactataac
aagtttcttaaagatggaattccgtacatgaatgaaacacaggagaaaagatttgaacat
cttttaccgggtagttcaatggtccatagtggttttggcaaggacaagctgaagaaggta
attgaagaagtaacttgctgggtatcttcagcagaagagaaagattgcctggttctgcat
gatctatatggattccagatgtttgaaatacaactgattttaagacatgctatcaaggat
atttggacaatccctttagaaggacatgaagttctggtaaaaaagatggatccacgccag
cgttggcttctggagaacacttcctatgactcttgtcaaaaagagcaaattcttctctgt
gcaagaggctttaccaatcttttccagacacttgttaaagcaaaaaagccactagtggga
cacaatatgctgatggatcttctacatctacatgagaaattctacaacccccttcctgaa
aactatgaggagtttaaaaagaacatgcacaccctgtttcctgttctcttggacaccaaa
aacattgcaaaagccacctggaagaaatttcaatttcctcaagcttctactcttttggaa
gtttatgaagtgctttgcagtgccataaatacaacaaaccagtcttgtccagagatcttt
cattcaaggaactgcctcagatatgccacaaagaagtgtccccatgaagcagcctatgat
gcattcctctgcggatcagttcttcttaaaattgctcatttgatcctttgcaacatttct
tgtgatcaaacaaagactgcccagtcttttccccagtaccttggtgtattgtctccatat
gtgaatcaggtgaaccttatccgaggtggtgttcagaaaattaatttttctggcatggat
gactctacaaaacacctcccacttctaatagctaatgtgcatggatggccaggggtgaat
gaagagcagatccatcaagagttaagaatcttctgcaattttgatgtgcggtggctaaga
atgaaccagtttctcttgctgtcaaatagatttagagatgtcagggtggtgttggaagaa
tataaaaatcatcccaacctacagatttccgtgtaccaccactggaggcattccccacag
gtgaactgcttcctcaaaatttgtggcattgtggcttcttggtctctcctggccttcttg
cttggaggctgttccaactgtgttgtgaaatag
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