Sceloporus undulatus (fence lizard): 121928507
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Entry
121928507 CDS
T07740
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121928507 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sund03041
]
121928507 (PRPF6)
Spliceosome [BR:
sund03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121928507 (PRPF6)
Complex C
U5 SnRNP specific factors
121928507 (PRPF6)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_17
TPR_2
ARM_TT21_2nd
FAT
T7SS_EccA1_N
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
121928507
NCBI-ProteinID:
XP_042319233
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All DBs
Position
4:7899277..7937166
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AA seq
992 aa
AA seq
DB search
MAATAASSSASSSSSASSSGAANAPSGGGGGGAGGSGSGSGSGLTASLTGTMNRKKKPFL
GMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQAADDD
DEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERREQREKEEIE
KYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFAK
HLQSGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDMRKIGQARNT
LMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHP
PAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHL
PQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVEC
CPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDR
AITSLRANGVEINREQWIQDAEECDKAGSVATCQAIMRAVIGIGIEEEDRKHTWMEDADS
CVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEV
LWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKAR
SSAPTARVFMKSVKLEWVLGNIAAAQELCEEALNHYEDFPKLWMMKGQIEEQEELVENAR
EAYNQGLKKCPGSIPLWLLLSRLEEKVSQLTRARAILEKSRLKNPKNQDLWLESVRLEYR
AGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVDALKKCEHDPHVLLAVAK
LFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCENAEPRHG
ELWCEVSKDISNWQRKIGEILVLVAAKIKNAF
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggccgccacggccgcttcttcctcggcctcctcctcctcctcagcctcctcctcaggg
gccgccaatgctccctctggaggcgggggcgggggcgctggagggtccgggtccgggtcc
ggctcaggcctgaccgcctccctgacgggaaccatgaacaggaaaaagaagcccttcctg
ggcatgccggccccgctgggctacgtgccgggactgggacgaggtgccacaggttttact
acccgctcagatattggtcctgctcgagatgcaaatgaccccgtggatgatcgtcatgct
cctccagggaagagaactgttggggatcagatgaagaaaaaccaggcagcagatgatgat
gatgaagatctcaatgataccaattatgatgagttcaatggatatgctggaagtctgttt
tcaagtgggccttatgaaaaagatgatgaggaagctgatgcgatttatgctgctttggat
aaaagaatggatgaaaggagaaaagagagaagagaacaacgtgagaaggaggagatagaa
aagtacagaatggaacgaccaaaaattcagcagcagttctcagatctgaaaagaaaattg
gccgaagttactgaggaggagtggctaagtatacctgaagttggtgatgctaggaacaaa
cgtcaaaggaatccacgttatgagaaactgactcctgttccagacagcttctttgcaaag
cacttgcagtcaggggagaaccacacatcggtggatcctcggcaaacacaatttggaggt
ttgaatacaccctatcctgggggcttaaacactccctatccaggtggaatgacccctggg
ctgatgacacctggaacaggtgaactggacatgaggaagattggacaggctaggaatacc
ttgatggacatgcgacttagccaggtgtctgactctgtgagtggccaaacagtggtggat
cccaagggctacctcaccgacttgaattcgatgattcctacacatggtggagatatcaat
gacataaaaaaagcacgtttacttctgaagtctgtgcgagagactaatcctcaccatcca
ccagcttggattgcttctgcacgcttggaggaggtgactggcaagctgcaggtggctcga
aatctcatcatgaaagggacagagatgtgccccaagagcgaagacgtgtggcttgaagct
gcccgcttacaacctggggatactgctaaggctgtggtggcccaggctgttcgtcacctt
ccacagtcagtgcggatttatatcagagcagcagaattggagacagatattcgagcgaag
aagcgtgtccttcgaaaagcactagagcatgttccaaactctgttcggttgtggaaagca
gctgtggagttggaagagcctgaggatgccaggataatgctcagccgagctgtggaatgc
tgtcccactagtgtagaactgtggcttgccttggcaaggttggaaacctatgaaaatgcc
cgtaaagtcttaaacaaggcccgggagaacatcccaactgacaggcacatctggatcaca
gctgccaaacttgaggaggccaatgggaacacacagatggtggagaagatcatagaccga
gccattacttcgttaagagcaaatggagtggaaataaaccgggagcagtggatccaggat
gctgaagagtgtgataaagctggcagtgtggcaacatgccaagctatcatgagagctgtg
attggaattgggattgaggaagaggaccgcaagcacacttggatggaagatgcagatagt
tgtgttgctcacaatgctctggaatgtgcccgtgcaatctatgcttatgctttacaagtt
ttccctagcaagaaaagtgtctggttgcgagcagcctattttgagaagaatcacggaacc
agagaatcgttggaggctctcttacagagggctgtagctcactgccccaaagccgaagtc
ctctggcttatgggggccaaatcgaaatggcttgctggagatgtacctgctgctcggagt
atcctggctttggctttccaggccaaccccaacagtgaagagatttggctggctgctgtg
aagttggaatctgaaaacaatgaatatgaaagagcaaggaggttgctggcaaaagctcgt
agcagtgccccaacggctagggtcttcatgaagtctgtcaaacttgagtgggtgcttggg
aacattgctgctgctcaggagctatgtgaggaagcgttgaatcactatgaagattttccc
aagctctggatgatgaaaggtcagattgaagagcaggaggaactagttgaaaatgccaga
gaggcatataaccaagggctgaagaaatgccccggatcgatacccctttggctcttgtta
tccaggctggaagagaaggtgagtcaactcacccgtgccagagccatcttggagaagtct
cgtttaaaaaatccgaagaaccaagatttgtggttggaatctgtgcgattagaatacaga
gctgggctgaaaaacattgctaatacgctgatggcaaaggcactgcaagagtgtcccaac
tctggaatcctgtggtcagaagcaattttcttagaagccaggccccaaaggaagaccaag
agtgtggatgctctgaagaaatgtgagcatgacccacatgtccttctggctgtggccaag
ttgttctggagtgaacgtaaaataaccaaggctcgtgagtggttccatcggactgtgaag
atagactctgacctgggggatgcctgggctttcttctacaagtttgaacttcagcacggc
acagaggagcagcaagaagaggtgaggaagcgttgtgaaaatgcagagccccggcatgga
gaactgtggtgtgaggtctccaaggacatcagcaactggcagaggaagattggtgaaatc
ctggtgctggtggcagcaaagataaagaatgccttctag
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