Sceloporus undulatus (fence lizard): 121929018 Help Entry 121929018         CDS       T07740                                  Symbol COL11A1 Name (RefSeq) collagen alpha-1(XI) chain   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism sund  Sceloporus undulatus (fence lizard) Pathway sund04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:sund00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     121929018 (COL11A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sund00536]     121929018 (COL11A1) Glycosaminoglycan binding proteins [BR:sund00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    121929018 (COL11A1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1 Motif Other DBs NCBI-GeneID:  121929018 NCBI-ProteinID:  XP_042320275 LinkDB All DBs Position 4:complement(112323321..112648519) Genome browser AA seq 1810 aa AA seqDB search GGRRKPGRPPPPLFPHLERLPPLLQPTPGSGAEPVDVLKALEFYNSPEGVSKTAGFCTNR RNSKGSDVAYRVSKHAQLSAPTKQLYPGGNFPEDFSILFTVKPKKGIQTFLLSVYNEQGI QQVGVEVGRSPVFLYEDQNGKPAPEDYPLFRTVNIADGKWHRVAISVEKKSVTMIVDCKK KTTKPLERSKKAVVDTNGITVFGTRILDEEVFEGDIQQLLIIGDPRAAYDHCEHYSPDCD SPVPNAPQAQEPQVDEYTTDDLIEYDYDYGDPDYRDYKDLDTVTEGPPLYEETVAQTEAN IVDEYHEYSVAETDYGTSEHYQTASPSQTTGPNEQIPVEEVFTEEYVTGEEYNSENKKTE ETDYGNRGIDHSETEGVVDGDLGEYDFYEYKEYEEKPTNPTNEEFGPGVPAETDVTETSV NGHGAYGEKGQKGEAAVIEPGMLIEGPPGPPGPPGLMGPSGTQGPTGPPGDPGERGPAGR PGLPGADGLPGPPGTMLMLPFRFGGGGEKGPAISAQETQAQAILQQARIAMRGPPGPMGL TGRPGPVGGPGASGAKGDAGDPGPQGPRGIQGPAGLPGKPGKRGRPGADGARGMPGEPGS KGDRGFDGLPGLPGDKGNRGDRGPQGPPGAPGEDGMRGEDGEVGPRGLPGEAGQRGLLGP RGTPGPPGQPGIPGIDGPQGPKGNLGPQGEPGPPGQQGIPGPQGLPGPQGPIGVPGEKGP PGKPGLAGLPGADGPPGHPGKEGQSGDKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGG KGEKGEDGFPGFKGDMGLKGDRGEVGPLGPRGEDGPEGPKGRSGPTGDPGGAGQAGEKGK LGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGP TGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGF QGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGI SGKDGPPGLRGFPGERGLPGAQGAAGLKGGEGPQGPPGPLGSPGERGPAGTAGPIGLPGR PGPQGPAGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQ KGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGP IGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGE PGEAGNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGIKGPPGDDGPKGNPGPVGFPGD PGPPGEPGPAGTDGTSGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGE KGAKGEPGSEGAPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPMGP PGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGTTGPKGDGGIPGPAGP IGPPGPPGLPGPQGPKGSKGSTGPGGQKGDGGLPGPPGPPGPPGEVIQPLPIQSPKKTRR SSDAMMSDAADSILDYTDGMEEIFGSLNTLKQDIEHMKYPMGTQNNPARTCKDLQLCHPD FPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGTWFSEFK RGKLLSYVDAEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDVSSDSYDKALRFLG SNDEEMSYDNNPYIKALHDGCASRKGYAKTVIEINTPKIDQVPIFDVMINDFGDQNQKFG FEIGPVCFLG NT seq 5433 nt NT seq  +upstreamnt  +downstreamnt ggtggaagacgaaaaccgggtcgccccccgccgcctcttttccctcacctggagcgcctt cctcctctcttgcagccgaccccgggcagcggagctgaaccagttgatgtgctcaaagca ttagagttttataattcgccagaaggagtatcaaaaacggcaggattttgcacaaacaga aggaattccaaaggatcagatgtcgcctacagagtttcaaaacatgcacaactcagtgca ccaaccaaacagttgtacccaggtggaaactttcctgaagacttttcaatactatttaca gtaaagcctaaaaagggaatccagactttccttttatctgtctacaatgaacaagggatt cagcaagttggggttgaggttggccggtcacctgtcttcctgtatgaagatcagaatgga aagcctgcacctgaagattatccccttttcagaacagtcaatattgctgatgggaagtgg catcgggtggctattagcgtggagaaaaaatctgttaccatgattgtggactgtaagaag aaaaccacaaaaccacttgagaggagcaagaaagcagttgttgacaccaatggcatcact gtctttggaacaaggattcttgatgaagaagtctttgagggtgatatccagcagctgttg atcatcggagatcctagagcagcctacgaccattgtgagcattatagcccagattgtgat tcccctgtgcccaatgctccccaagctcaagaacctcaagttgatgagtacacaacggac gatttaatcgagtatgactatgactatggggatccagattatagagattataaagacctt gacactgtaaccgagggacccccactatacgaggagacagtagcccagactgaggccaac attgttgatgaatatcatgaatacagtgtggctgaaactgattatggaacctctgaacac taccagactgcatctcccagtcaaaccacaggaccaaatgagcaaattcctgttgaagaa gtatttactgaagaatacgtaacaggagaggagtataactcagagaataaaaaaactgag gagacagattatggaaaccgaggaatagaccacagtgaaactgaaggtgtggtagatgga gatttaggcgaatatgatttttatgaatataaagagtatgaagagaagccaaccaatccc actaatgaggagtttgggcctggtgttccagcagagactgatgtcacagaaacaagtgtg aatggtcatggtgcttatggagaaaaaggacagaagggagaagctgcagtgatcgaacct gggatgcttattgaaggacctccaggacctccaggacctccgggtcttatgggtccttca ggtacacaaggtcccactggtcctcccggtgaccctggtgagaggggtccagcaggacgc cctggacttccaggtgctgacggcttgcctggccccccaggtactatgttaatgttgccg tttcgctttggtggaggaggggagaagggcccagcgatctcagctcaagagacccaagct caagctattcttcagcaagccaggattgccatgagagggccacccggccctatgggactc actggacgaccaggtcctgtgggtggtccaggtgcctcgggtgccaaaggtgatgctgga gatccaggtcctcagggtcctcgaggcatacaaggtccagctggtctccctggaaaacct ggcaaaagaggtcgtccaggtgctgatggagctcgaggaatgccaggagagcctggatcc aagggtgacagaggttttgatgggcttccaggtctacctggtgacaaaggtaacaggggg gatcgtgggccacaaggacctcctggtgctcccggtgaagatggaatgagaggagaagat ggagaggttggaccaagaggcctcccaggtgaagctggtcagcgaggattattgggccca agaggaactcctggcccaccaggacagccgggaatcccaggtattgatggcccacaggga ccaaaaggaaacttgggcccccaaggggaaccaggacctcctggccagcaaggaatccca ggtccacaagggcttcctggtccacaaggcccaattggagttcctggtgaaaagggaccc ccaggcaagcctggccttgctggacttcctggtgctgatggccctcctggtcatccaggc aaagaaggccagtctggagacaaaggagctttggggcctccaggtcctcaaggtccaatt ggttatcctggccctcgtggagtaaagggtgcagatggtgttcgtggtttaaagggtggc aaaggggaaaagggtgaagatggtttccctgggtttaaaggtgatatgggccttaaaggt gacagaggtgaagttggtcctttaggtcctcgaggagaagatggccctgaaggaccaaaa ggtcgttcaggcccaacaggagaccctggtggagctggtcaagctggagaaaagggcaag cttggtgttccaggattgccaggatatccaggaagacaaggcccaaagggctctacagga ttccctggattcccaggtgccaatggagagaaaggtgcaaggggcttgcatggcaaacca ggcccaaggggacaacgaggaccaacaggaccacgtggatcaagaggtccaagaggccca actggaaaacctggtccaaagggcactgctggcaacgatggaccgcctggcccaccaggt gaaaggggaccacaaggaccccaaggccctgttggattccctggaccaaagggaccacct ggaccacctgggaaggatggcttgcctgggcacccagggcagcgaggtgaaactggtttc caaggcaaaacaggcccaccaggcccaggtggtgttgttggacctcagggccccactgga gagacaggaccaattggtgaaagaggtcaccccggccctccaggtccaccaggggaacaa ggcctgccgggtgctgctgggaaggaaggcgctaagggtgatcctggtcctcaaggcatc tctggaaaagatggacctccaggacttcgtggtttcccaggagaaagagggttgccagga gctcagggtgcagctggtctgaaaggaggagaaggtccacaaggtccacctggcccattg ggttcacctggtgaacgtggaccagcaggaaccgctggcccaattggtttgccaggccgc cctggcccccagggtcccgctgggccagcaggcgaaaagggagctccgggtgaaaagggt cctcagggcccagctggacgtgatggagtacaggggcctgtaggacttcctggccctgct ggtccagctggttctcctggagaggatggtgacaagggtgaaattggagaaccaggtcag aaagggagcaaaggtgacaagggagaaaatggtcctcctggaccaccaggtcttcaaggt cctgtcggtgctcctggtatagctggtggtgatggagagcctggtccaagaggacagcaa ggaatgtttgggcagaaaggtgacgaaggtccacggggttttcctggtcctccaggaccg attggtcttcagggtcttcctggaccaccaggcgaaaaaggtgaaaatggtgatgttggt ccaatgggtcctcctggtcctcctggcccaagaggtcctcagggtcctaatggagctgat ggtcctcaaggtcctccaggttcagttggctctgttggaggtgttggtgaaaagggtgaa cctggagaagctggcaaccctggacctcctggagaagctggcacaggtggtccaaaagga gaacggggtgaaaagggtgaggctggaccaccaggtgcagctggaccccctggtattaaa ggacctccaggtgatgatggacctaagggaaatccaggccccgttggctttcctggagac cctggcccccctggtgaacctggcccagctgggactgatggtacgtcaggagagaaaggt gaagatggtgatccaggccaacctggcccgccaggtccatcaggagaagctggccctcct ggcccccctggaaagagagggccaccaggagcagctggtgcagaagggagacaaggtgaa aaaggagcaaagggtgaacctggttcagaaggtgctccgggaaaaacaggtccagttggg ccacagggtcctgcaggaaagcctggcccagagggacttaggggtattcctggccctgtg ggagaacaaggtctacctggagcaccaggtcaggatggcccaccaggtcctatgggtcca cctggcttgcctggcttgaaaggtgatccaggttccaaaggtgaaaagggacatcctggc ttgattggactgattggacctccaggtgaacagggagaaaagggtgaccgaggtctgccc ggcccccagggaaccacaggaccaaaaggagatggaggaattcctggtcctgctggccca attggtcctcctgggccacctggtttacctggccctcaaggccccaaaggctctaaaggt tcaacaggtcctggtggtcagaaaggtgatggtggtttacctggacctcctgggcctcct ggtcctccaggtgaggttattcaacctttgccaatccagtcacccaagaagaccagaaga tcttcagatgccatgatgtctgatgcagccgatagcatccttgattacactgatggcatg gaagagatctttggctcacttaatactctgaagcaggacattgagcatatgaaatatcca atggggacacagaacaacccagctaggacatgcaaggatctccaactctgtcacccagac tttccagatggagaatattggattgatcccaaccagggttgttctggggattctttcaag gtgtactgtaatttcacagcaggtggggaaacttgcatctatccagataagaagtcagaa ggagtcaggatttcatcatggccaaaagaaaatccaggaacctggttcagtgaatttaaa agaggcaagctgctttcctatgtcgatgctgaaggcaattctattaatatggtccaaatg acattccttaaactactgagtgcctctgccagacagaacttcacttacaactgtcatcag tcagtggcttggcatgatgtatcttccgacagctatgacaaagcactgaggttcttaggc tcaaacgatgaagagatgtcttatgacaacaatccttacatcaaagctcttcatgatggc tgtgcatcaagaaagggctatgcaaagactgttatcgaaatcaacactcccaaaattgac caagtgcctatttttgatgtgatgatcaatgactttggtgatcagaatcagaagtttgga tttgaaattggtccagtctgtttccttggttaa

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