Sceloporus undulatus (fence lizard): 121929054
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Entry
121929054 CDS
T07740
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin Fat 4-like
KO
K16494
protocadherin beta
Organism
sund
Sceloporus undulatus (fence lizard)
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sund04515
]
121929054
Cell adhesion molecules [BR:
sund04515
]
Cadherins
Protocadherins
121929054
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
121929054
NCBI-ProteinID:
XP_042320308
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All DBs
Position
4:complement(135298205..135323753)
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AA seq
1940 aa
AA seq
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MEDCFRSKQGLCLLLFLCVTDVLCVSIHYSVPEEKKTGSLVANVLKDLKLGIGELSARRA
QLVSKSSKQYFHLDAHSGALLINEKIDREALCGQSELCLLQNEIVLQNPLEFYTIEVKVE
DVNDNAPRFSQNDFQLEIPENVPSNTRFPLESAQDVDLGENSIQNYTLSPNEYFRLGIES
KKDGRKSIGLILEKSLDREKEPHLELTLMALDGGIPQRTGTVKIKINILDNNDNFPQFVQ
SEYKVRIKENSPRDTLVCKVEARDLDFGSNAEITYSFHQVPGKILDLFHLNEMTGEITVK
GETDYEKETSYDMSIKATDGGGLSGHSNVLVEVEDVNDNAPEVSVISLTDIIQEDSPLNT
VVAIFSITDRDSGDNGKTMCSVEMNLPFALRSTKNNYYQLMIQSPLDRERVPEYNVTITA
TDQGSPRLTSTRIIHVQISDVNDNTPVFEKTFFEMRLQENNIPGLLIGSVHAVDLDTEQN
GKVSYSLLPRELGGSPAASYISINSETGNMYALRSLDYEQIKDFKVTVRAKDGGTPPQSS
DVVVRVVVADENDNAPFFLYPLQNNTSPCNELLPKMAEAGYLVTKVVAVDRDSGQNSWLS
YELLKATDPGLFSIGAQNGEVKTRRPLTERDSSKQRLIIAVRDNGVPPQTSTATLSVLPV
DGFSDPYLKVVDVHQQEHEDEGTLTMYLVVCLASVSSVFLLCIISFVVIKSCKKDPGGTF
IAAPPHFPPSRPDIPENCTDSQSGSLSRNYQYDVCLTGGSLSSEFRFLRPLIPVFSVADT
NIPVIHKTSPGSQDLPDSLEDNKLKEETMEDCFRRKQGLWFLLFLCVIDVLCVSIHYSVP
EEKKSGSLVANILKDLKLGIGELSARRAQLVSKSSKQYFHLDAHSGALLINEKIDREALC
GQSDLCLLQSEIVLQNPLEFYTIEVKVEDVNDNAPRFSQNDFQLKIPENVSPNTRFPLES
AQDVDLGENSIQNYTLSPNEYFRLGIESKKDGRKSVDLILEKALDREKQSHFELILMALD
GGLPQRTGTMQVNINILDSNDNSPQFSQTEYEVSLKENSPQDTLVSKVEAKDLDFGSNAQ
ITYSFHRVSKTISNLFNLNEMTGEITVKGEIDYEKETTYDMSITATDGGGLSGHCNVLVE
IEDVNDNAPEVSVISLTDIIQEDSPLDTVVALFSITDRDSGDNGKTLCSVEINLPFSLRS
SKNNYYQLMIQSPLDRESLSEYNVTITATDQGSPRLTSTRIIHVQISDVNDNTPVFEKPL
FEMRLQENNIPGLLIGSVHAADLDVEQNGKVTYSLLSRELGGSHAASYISINSETGNMYA
LRSLDYEQIKDFKVTVRATDGGTPPLSSDVVVRVVITDENDNAPFFLYPLQNSTSPCNEL
LPKMAEAGYLVTKVVAVDRDSGQNSWLSYELLKATDPGLFSIEAQNGEVKTRRPLTERDS
NKQRLIIAVRDNGVPPQTSTATLNNQCTPGMAFLSYLKVVDVHQQRAXRXDEGTLTMYFG
GCWHRLSVFLLCIIXFVVINSCKKDXGGLFMLPPHFPPSRPDIRNCTDSQSGSLSRNXSI
EFCLMVSLSSEFISSPLIPVFCSDTHIPXSIRLLLVSQDLPVLEDNKLKEHESTSPCNEL
FPKWLRVDIWSPKKRVQERPGGTFIAAPPAFSSSFQDLSIPENVDRFSEWITFQELSVIP
VKRQDVFWFPRSIRLLGKRGKSNKSKERDNGVPPQTSTATLNILPVDGFSDPYLKVVDVR
QQEHEEEGTLTMPDIPENCTDSQSGSLSRNYQYDVCLTGGSLSSEFRFLRPLIPVFSVAD
TNIPVIHKTSPGSQDVPDSLEDNKSKEQNCFKGPKLMGKKERLLAALEVECADDTCPHSS
WRMHGEYAQPEKVNCKKSAESLLFAGIPFGIVEMSWFQTRLCQCHGPALIVGYWGWSGLR
PFQAASLHDPNNAVFLWCKN
NT seq
5823 nt
NT seq
+upstream
nt +downstream
nt
atggaagactgcttcaggagcaaacaaggtctgtgtttattattgttcctttgtgtgact
gatgtactgtgtgtctcaattcattattctgtgcctgaagaaaagaaaactgggtctctg
gtggctaatgttttgaaagatttgaaattggggattggggagctctctgctcgcagagcc
cagctagtatccaaaagctccaagcagtatttccatcttgatgcccactctggggctctg
ctcataaatgagaaaatagaccgagaggctctgtgtggtcaaagtgagctttgtttatta
caaaatgaaatagtgcttcaaaaccccttagagttctatacaattgaagtgaaggtggaa
gatgtaaatgacaatgctcccagattttcccaaaatgattttcagctggaaattcctgag
aatgttccctcaaatacaagattccccttggaatctgctcaagatgtggacttgggagag
aacagcatccagaactacaccctgagtcccaatgagtatttcaggcttggaatagaaagc
aagaaagatggaagaaaatccattggacttattctggagaaatctctagatagggaaaaa
gaaccacatttggagctgacacttatggctttggatggaggcatacctcagagaactggt
actgtcaaaatcaaaatcaatattttggataataatgataacttccctcaatttgttcag
tctgaatacaaagtaagaataaaggaaaatagtcctcgggatactcttgtctgcaaagtg
gaagccagagatttggattttggttcaaatgctgagatcacctactccttccatcaagtg
cctggcaaaatacttgatttgtttcatttgaatgaaatgactggagaaatcacagttaag
ggagaaactgattatgagaaagagaccagttatgacatgagtatcaaagcaactgatgga
gggggcctttctggacactccaatgttctggttgaggttgaagatgtgaacgacaatgcc
ccagaagtttcagtcatatcccttactgacataatccaagaggattctcccctgaacaca
gtggttgctattttcagtattacagatcgtgactctggggacaatggcaaaactatgtgc
tctgttgagatgaaccttccgtttgcattaagaagcaccaagaataactactaccagctt
atgatccagagccctctggacagagagagagtccctgaatataatgtcaccatcacagcc
acagatcaggggtctcctaggctcacctcaacaagaattatccatgttcagatatcagat
gtcaatgacaacaccccagtgtttgaaaagactttttttgaaatgaggttacaagaaaat
aatattcctggactgctaatcggctcagttcatgctgttgacctagacacagagcagaat
ggcaaagtaagttactcgcttttgcctagagaactcggtggtagccctgcagcgtcttac
atctccatcaactctgaaactggaaacatgtatgccctccgatctctggactatgagcaa
ataaaagattttaaagtcacagtgagggctaaagatggtggtactcctcctcagagctct
gacgttgttgtgcgagttgtggttgcagatgaaaatgacaacgctcccttcttcctctac
cctcttcaaaataacacatcgccctgcaatgagctccttcccaagatggcagaggctgga
tatctggtcaccaaagtggtggctgtggatcgagattctggtcagaactcttggctttcc
tatgaactgctgaaggccacagaccctggtcttttcagcataggagcccagaatggagag
gtgaaaaccaggagaccactgactgagcgagactcaagcaaacagaggctgattattgct
gtcagagacaatggtgtcccacctcagaccagcactgcaacactcagtgtacttccagtg
gatggcttttctgatccttatctgaaggtggtggatgtgcatcaacaggagcatgaagat
gagggcaccttgaccatgtatttggtggtttgcctggcatctgtctcttctgtgtttctg
ctttgcattatttcctttgttgttatcaaatcctgcaagaaagaccccggaggcactttt
attgctgcccctcctcactttcctccttccaggcctgatatcccagagaactgtacagat
tcccagagtgggtcactttccaggaattatcaatatgatgtttgcttaactggtggatcc
ttaagcagtgagttcagatttcttcggcctctcattcctgttttttctgttgcggacaca
aatatccctgtgatccataagacttctcctggttcccaagacctcccagattccttggaa
gataataaattgaaggaagagaccatggaggactgcttcaggagaaaacaaggtctgtgg
tttttactcttcctctgtgtgattgatgtactgtgtgtctcaattcattattctgtgcct
gaagagaagaaaagtgggtctctggtggctaacattttgaaggatttgaaattggggatt
ggggagctctctgctcgcagagcccagctagtgtccaaaagctccaagcagtatttccat
cttgatgcccactctggggctctgctcataaatgagaaaatagaccgagaggctttgtgt
ggccaaagtgatctttgcttattacagagcgaaattgtgctccaaaaccccttagagttt
tatactattgaagtgaaggtggaagatgtaaatgacaatgctcccagattttctcaaaat
gattttcaactgaaaattcctgagaatgtttccccaaatacaagatttcccttggaatct
gcccaagatgtggacctgggagaaaacagcatccaaaattacaccctgagtcccaatgag
tatttcaggcttggaatagaaagcaagaaggatggcagaaaatctgtggatcttattctg
gagaaagcgctagacagagaaaaacaatcacattttgagctgatacttatggctttggat
ggagggctacctcagagaacaggaacaatgcaagtaaatattaatatcttagatagcaat
gataattcaccacagttttctcaaactgaatatgaagtaagcttaaaggaaaacagtccc
caggatactctggtctccaaagtggaagccaaagatttggattttggttcaaatgctcag
atcacctactccttccatcgagtatctaaaacaatatctaatttgttcaatttgaatgaa
atgactggagaaatcactgttaagggagaaattgattatgagaaggaaaccacttatgac
atgagcatcacagcaactgatggagggggcctttccggacactgcaatgttctggtagag
attgaggacgttaatgacaatgcccctgaagtttcagtcatatcccttactgatataatc
caagaggattctcccctggatacagtggttgctctctttagtattacagatcgtgactct
ggggacaatggcaaaactttgtgctctgttgagataaaccttcccttctcattaagaagc
agcaagaataactactaccagctaatgatccagagccctctggacagagaaagtctctct
gaatataatgtcactattacagccacagaccaggggtctcctaggctcacatcaacaaga
attatccatgttcagatatcagatgttaatgacaacaccccggtgtttgaaaagccttta
tttgaaatgaggttacaagaaaataatattcctggtctgctaattggctcggttcatgct
gctgacttagacgtggagcagaatggcaaagtgacctactcgcttttatctagggagctt
ggtggtagccatgcagcctcttacatctccatcaactctgaaactggaaacatgtatgcc
ctccgatctctggactatgagcaaataaaagatttcaaagtcacagtgagggctacagat
ggtggtactcctcctctgagctctgacgttgttgtgcgagttgtgatcacagatgaaaat
gacaatgctcccttcttcttgtatccacttcagaacagcacatcaccctgcaatgagctg
ctgcccaagatggctgaggctggatatctggtcaccaaagtggtggctgtggatcgagat
tctggtcagaactcttggctttcctatgaacttctgaaggccacagaccctggccttttc
agcatagaagcccagaatggagaggtgaaaaccaggagaccactgactgaacgagactca
aacaaacagaggctcattattgctgtcagagacaatggtgtccctcctcagaccagcact
gcaacactcaataatcagtgtactccagggatggcttttctgtcctatctgaaggtggtg
gatgtgcatcaacagagagcatgaagatgagatgagggcaccttgaccatgtattttggt
ggttgctggcatcgtctctctgtgtttctgctttgcattattncctttgttgttatcaat
tcctgcaagaaagacnccggcggactgtttatgctgccccctcactttcctccttccagg
cctgatatcaggaactgtacagattcccagagtgggtcactttccaggaatnnatcaatt
gagttttgcttaatggtgtccttaagcagtgagttcatttcttcgcctctcattcctgtt
ttttgttcggacacacatatcccgtgatccataagacttctcctggtttcccaagacctc
cccgtcttggaagataataaattgaaggaacatgaaagcacatcaccctgcaatgagctc
ttcccgaagtggctgagggtggatatctggtcaccaaaaaaaagggtgcaagaaagacct
ggaggcacgtttattgctgcacctccagcatttagttcctcctttcaggacctgagtatc
ccagagaacgtggaccgattctcagagtggatcactttccaggaattatcagtaattcct
gtgaaacgacaagacgtcttctggttcccaagatctatcagattgcttggaaaaagggga
aagtccaataaatcaaaggaaagagacaatggtgtccctcctcagaccagcactgcaaca
ctcaatatacttccagtggatggcttttctgatccttatctgaaggtggtagatgtgcgt
caacaggagcatgaagaggagggcaccttgaccatgcctgatatcccagagaactgtact
gattctcagagtggttcactttccaggaattatcagtatgatgtttgcttaactggtgga
tctttaagcagcgaattcagatttctccgacctctcattcctgttttttctgttgcggac
acaaatatccctgtgatccataaaacttctcctggttcgcaagacgttccagattccttg
gaagacaataaatcaaaggaacagaattgtttcaagggcccaaaactgatgggcaagaaa
gagaggcttctggctgctctggaggtggagtgtgcagatgacacatgcccccacagcagc
tggagaatgcatggagagtatgcccagccagaaaaagtcaactgtaaaaagagtgcagaa
agtctactctttgctggcattccatttgggattgtggagatgtcctggttccagaccaga
ctgtgccaatgccatggtcccgcattaatcgtgggctactggggctggagcggcctcagg
ccatttcaagctgccagtctgcatgatcccaataatgctgtcttcttatggtgcaaaaat
tga
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