Sceloporus undulatus (fence lizard): 121930764
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Entry
121930764 CDS
T07740
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03013
Nucleocytoplasmic transport
sund03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121930764 (UPF2)
03015 mRNA surveillance pathway
121930764 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sund03019
]
121930764 (UPF2)
Messenger RNA biogenesis [BR:
sund03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121930764 (UPF2)
mRNA cycle factors
P-body specific factors
121930764 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
121930764
NCBI-ProteinID:
XP_042323513
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All DBs
Position
5:complement(89564029..89617573)
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AA seq
1302 aa
AA seq
DB search
MPAERKKSTSMEEKETSLSNKDKEFSDRRSVSSRDKPKEDVRLGVKREMLKPPEDKKKKL
EEEKRKKEDKERKKKDDEKVKSEEEQKKKEEEEKQKLEEEEKMKQEEEVKRQQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNASDSRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKMPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKSAADKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPVPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQNKDSSKDDSRAELKEAKENRDVSGTEDLELDLENLDINDDTLELDCGDEA
EDLTKKLLDEQGKKQGADSTGAENSNGKQAARIEQEDEETSTGSHLKLIVDAFLQQLPNC
VNRDLIDKAAMDFCMNMNTKANRRKLVRALFIVPRQRLDLLPFYARLVGTLHPCMSDVAE
DLCSMLKGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFSKSDTLHCLKMLLSDFSHH
HIEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPP
PAEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWHDPEVKDYVICCMINIWN
VKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGEL
YNYRMVESAVIFRTLYSFTSFGVNSDGTPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSS
KRKLDCFLVYFQRYVWWKKSLDVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESVR
QVQELEREFLIKLGLVNDKDSKDSMTEGENLEEEEEEEEGGVEIEEQSGNESEINDPEEE
EGSDNDDEEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKRVPCAEDEDFIQALD
KMMLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKG
NKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQR
PAPANTNRERRPRYQHPKGAPNADLIFKTGGRRERGNRQRRS
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgaacgtaagaagtcgacaagcatggaagaaaaagaaacatcattaagtaat
aaagataaggagttcagtgacagacgatcagtgagcagcagggacaagcccaaagaggat
gtcaggcttggcgtgaagagagaaatgttaaaaccacctgaagataaaaagaaaaaactg
gaggaggaaaagcggaaaaaagaagacaaggaacgtaagaaaaaagacgatgagaaggtt
aaatctgaagaagagcagaagaaaaaagaagaggaggaaaagcaaaaacttgaagaggag
gagaaaatgaagcaagaggaagaagtgaagcggcaacaggaagaggcagctgcccagctt
aaagagaaggaagaggcccatcagctccaccaggaagcttgggaacgccaccaggcaaga
aaggaactccgtagcaaaaaccagaatgcatcagacagccgccctgaagagaacttcttc
agcaggctggattcaagcctcaagaaaaacactgcctttgttaagaagttaaaaactatc
acggaacagcagagagactccttgtcccatgactttaatggtctcaatttaagcaagtac
attgcagaggctgttgcttctatagtggaagcaaagctaaaaatatcagatgtaaactgt
gcagtgcatttgtgttccctctttcatcagcgttacgctgactttgctccatcactgctg
caagtgtggaaaaagcattttgaagcaaggaaagaagaaaaaatgcccaacattactaaa
ctaagaacggacttgcggttcattgcagaactgacaatagttggcattttcacagataaa
gaaggcttgtctttaatctatgaacagctaaagaacattattaatgctgatcgtgaatcc
cacacccacgtttcagtggttattagtttttgtcggcattgtggagatgatattgctggt
ctggtaccaaggaaagttaaaagtgcagcagataaatttaacttgagttttcctcccagc
gaaataattagcccagagaagcagcaacctttccaaaatctgctaaaagaatattttaca
tccttgaccaaacatctgaaaagggaccacagggaactgcaaaatattgaaagacaaaac
aggcgtattctacactctaaaggggaactgagtgaagatcgacataagcagtatgaagaa
tttgccatgtcctatcagaagttgttggcaaactctcagtctttagctgatcttctggat
gaaaatatgcctgatcttcctcaagacaaaccagtaccagaagaacatgggcctggcatt
gacatttttacccctggcaagcctggtgaatatgacttggaagggggcatctgggaggat
gaagatgctcgaaacttctatgagaatcttattgacttaaaagcatttgtgccagcaatc
ttgttcaaggataacgaaaagtgttcacaaaacaaggactcaagcaaagatgactctaga
gcagagttaaaagaagctaaggaaaacagagatgtgtctggtactgaagatctggaatta
gacctggagaatttagatatcaatgatgacacgcttgagttagactgtggtgatgaagca
gaggatctcaccaaaaagcttcttgatgaacaagggaagaaacagggagcagatagcacc
ggagctgaaaatagcaacggaaagcaagctgcaagaatagagcaagaagatgaagaaacc
agtactgggtcacacctgaagcttattgtagatgctttccttcagcaactcccaaactgt
gtaaatagagacctaatagacaaggcagcaatggatttttgtatgaatatgaacacaaag
gccaacagaagaaaattagtccgggctctctttatcgtacctcgacaaaggctagacttg
ctacctttttatgcaaggctggttggcacattacatccctgtatgtctgatgtagctgag
gatctctgttccatgctgaaaggcgacttcaggtttcatgtgagaaagaaggaccagatc
aacattgaaacaaaaaataaaactgtacgattcattggagagcttactaagtttaaaatg
ttctcaaaaagtgacactctgcattgcttaaagatgcttttgtctgacttctcacaccac
catattgaaatggcgtgtactctgctagagacttgcggtagattcctcttcagatcacca
gaatcccatttaagaacaagtgttcttttggaacaaatgatgcggaaaaaacaagcaatg
catctagatgcccggtatgtcacaatggtagaaaatgcctattactactgcaatccccct
ccagctgagaaaactgtgaagaagaaacgccctcctctccaggagtatattcggaagctc
ctttataaggatctttctaaagtcacaactgagaaggtcctgagacagatgcgcaaattg
ccctggcatgaccctgaagtgaaagactatgttatatgttgtatgatcaacatctggaat
gtgaaatataatagtattcactgtgtagccaaccttttagcagggctggtactttaccaa
gaggatgttggaattcatgtagtggatggtgttctagaggatattcgactgggaatggag
gttaatcagccaaaatttaaccaacgaaggatcagcagtgccaagttcctgggtgagctg
tacaattacagaatggtggagtcggcagtaatatttcgaactctgtattcatttacatca
tttggtgtgaactctgatggtactcctagcccacttgatcctccagaacatcttttcaga
atcaggctggtctgcaccatccttgatacttgtgggcagtactttgatagaggatctagc
aaacgaaaacttgattgctttttggtctactttcagaggtatgtctggtggaagaaaagc
ttggatgtttggacaaaagatcacccattccctatagacattgactatatgatcagtgat
acattagaactgctgagaccaaagataaaactctgcaactctctggaagaatctgttagg
caggtacaagaactggaaagggaattcttaatcaaactaggtcttgtgaatgacaaggac
tctaaggattcaatgacagaaggggagaatctagaggaggaggaagaggaagaggaaggt
ggagttgagatagaagaacaatcaggaaatgaaagtgaaataaatgacccagaggaagag
gagggctctgacaatgatgatgaagagggagaagaagaggaagaagaaaatacagattat
ctcacagactctaataaggagaatgaaactgatgaagaaaatactgaagtaatgattaaa
ggaggtggacttaaacgtgttccttgtgctgaagatgaagattttattcaggcactggac
aaaatgatgctggaaaatttacagcagaggagtggagaatctgtgaaagtgcatcagcta
gatgttgcaatccctttgcatctcaagagccagctcaagaaaggtccaccattgggtggt
ggggaaggagaatctgagtctggagacacaatgccttttgtcatgttaaccagaaaaggc
aacaagcaacagtttaagatccttaatgtgccgatgtcctcccaactggctgcaaatcat
tggaatcagcaacaagctgagcaagaggagaggatgagaatgaaaaaattgacactggat
atcaatgaacggcaagaacaagaggactatcaggagatgatgcagtccttggctcagcgg
ccagctccagcaaataccaatcgagaacggcggcctcgttatcagcatccaaagggagca
cctaatgctgatctaatctttaaaactggtggaaggcgtgagagagggaacagacagcgc
cgaagctga
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