Sceloporus undulatus (fence lizard): 121931362
Help
Entry
121931362 CDS
T07740
Symbol
ALMS1
Name
(RefSeq) Alstrom syndrome protein 1 isoform X1
KO
K16741
alstrom syndrome protein 1
Organism
sund
Sceloporus undulatus (fence lizard)
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sund03036
]
121931362 (ALMS1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
sund03037
]
121931362 (ALMS1)
Chromosome and associated proteins [BR:
sund03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
121931362 (ALMS1)
Cilium and associated proteins [BR:
sund03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
121931362 (ALMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALMS_motif
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
121931362
NCBI-ProteinID:
XP_042324976
LinkDB
All DBs
Position
5:complement(189851835..189962849)
Genome browser
AA seq
2882 aa
AA seq
DB search
MEGPQREGSPALPIATTPPLAGQKEELLSQSSSGTQISNASGVSLGEVIRRRSATNWEME
EWYQPCTEVDASNLIVAIGWKMSQTPGACDLTEFTTMEEGFVTPAETFGRQQAPNVTHSP
ILEIQDSCLSPKLPLLTTYATQGQTFFNETVFQPAEVDFAALRGTPDVSRTASEEASSHL
QMREAVRLATMEVGSESSSDCLPLSQHSLAISTMAPSNTSLGSYLSQHPLSLSACMLTEQ
RNCNEEETPQLSMCGKTFGSKDGISGVLSSQNLPNQQMATPLESWGAFSGQDLFLLDSNV
PAPLLLEILEEEVGLSKQYGFLSSESSSGKSVLGKDAEENETSQQMEDVVLVERHPETFV
EPHQQEVGNISELDPLKVFSDSERKLGNASDAANTSQALASFGGQRVSLGDSCSNTGVPS
RPLQNKVQVQHVSEVVFEEQKRKLVSAVTDCRRNVPLQPATMAAEHGNTGSKQVNSVVET
QMGASKNELTLSDFIIEREHKDSGISPSFNEGSFFGHLAHPVHHSTPGLFTTRNLRQEAS
GMTIPAKSVLQSPLSCLREETSKNSSGEACIPSVEEPRVPSGDDTGVPSAEEPLTFQSDQ
EAKNESSGHLRVLRPLKGRIQSLPSLNFMEKVGAWNTSQSAERMPNALALDGSSGISPKQ
KSYSVIADSLNSILLKHQNQFDLKPGLVTPFCGPKSMTNLRSYDKKSPHALPLTRSQSEN
SVMAISREMSKTEVGHEKIQDYNLQPAEDKGHASGDSEVKQSEACRDDAKEPLIQHHTAV
LVSTVSSDEERIEHVGSGKSSNPDNFITSERVAELLREETGSLSGCQEKSGGSPDNTREL
SGTHRCNNQISMDCFRDVSPDSLNQLTSSGGGSCIDLRLSSGQSSRRSSAVSGKLQSSFK
DVLQTSDHREMNIEERIPVYLHNLGIDQSPSSILTPFVPRGPIREIELSPTELRTLKAST
DLSTQCGQLSEGDPHSVIDAIQSSFNSSIFSGPVPAGSHTGSDSPLPTELPSQPSGDLLG
QSRTVCRQLQLCAPPQPLSGDTSKSPAALPSAELSQVIPEVPSDSHSEEERAPECVKSLA
DINDPKELGVSKEKPFCGSVAQENAEKGMTGETTSLCVDSEGERDYSFIGSETLKEIEKL
LAESESRTSGRNFNTSSFVSSSTELGSSLKQMKDMDASVGSGPVKGSYPGIQRMWSWDET
LNGQNVQEDNTRAKTLSLSGRLKWEGFRAVDIGSQKQVVPEKLKPTCEAVAEENKGVKPI
TRSEPEGCNSVVVNKSLPVSGNSAAKSNLSNPRDLKEFQATSSVKPSNTLENVQQVLEKT
KGGSNKEMSSSHSSSVDSLGMKVKTLLRYEPPVLHSTRWLDEQACGESAQKQGSVGASLA
GSKGAPSASQSNHSSSLDSLAARVKTLLEDERPVMHAIQILQSAEEEEAKAHASLKLKQA
AQPADSVPDLNEEDRRMIEQIKREQYLNARTSGIRKGQLWRTGKISSPDPISKLNPELSK
PSSGNELQKAIHTQNFEPVEVPKVVQARPVCRTDCALQSEPETKSINRIQFPACNQLQTH
TDNFLDSKQNVHVPLGSAKDINLMELAGASRALVGDKVKASTQLTVSNSSTEPAKQITSI
TFASRKRLYSPASCPGFHKATPGNLVPLERQPFNNEPLKPSKPQQENLKPCALGDTAAVR
ILDRSVGFSSGRGSDQDMSLFGVKEETHLEKNIALVEKSQAGCIEQKVNFTEDYKEAQPS
QILTELRRSDTLLDDVCDNNSNPKGNMADLSFSINVSQQKTDDACPQDKSADCNGSFPHT
PEPKGKEIMLVKESSKLTFDSHLGRAGDIDVRSSSLLPPSPDNKATVLAGSPSSPTRKAL
SGVHITLSPKCIDLDLPGQLDTGTEMRQVGEVKNASALNASAISSEATSQLKPSEPSPKT
QEFSYFPTPLASESQFKHPDVPVVAEQAPHRRQELLESRQNFPVQSSGRNLGTGGQSLEE
SSKNTAASQTERMSSDAITQITTESPEKTIYSAEIFVSTDNNETDAPRPLPQKRHEILST
TTADVNQSSIFSRQADPPLLLPYKPPGSSEVYYVPCSKETLGLSRMRSETTVESSHSGSN
DAIPPKFPAQVLGSRDENPPDTGAIKHGEGIYSKRTVVKGAWTQEKVSSWEGFKESADIK
KALESVKTIHSVFKPGEFYLHHPVPLQHEIDFLPRSDSLRQCSVQERPAPSSKDFFQHKE
MTERRQVPSSLPHRKKEERFSPLTAELDYSFVEGSRFSKPSETDSPRRESGQPDRRKTGH
ETAKEPLSPGTQRTGLKEKQVADHPVMQSTYFTGSLDELWTKYLERQKQPLQRIADSSGR
NELSLVERLDRLARLLQNPVRHSLVVPSKDEQSSVQEEMKRKEPKKTKSQGRVAYRSNLA
SHSKVKESPEIVGSAQLSKSRFHNIGATTAVDLRDKEKCQDFESLSDASSEMRPVKDSSV
LSGNTSESGVTQLETESASRTEASGSVSTIDTARLIRAFGQDRVHISPKLSQLYSNISLQ
KTRSEKWTKGSRKSRTTDHPNMARAVPAGKNTQATDSFISSDSVSTAGGSRGPSSALSSK
RSTRMLNKAVQAGDFEIVNSATKKHTRDVGQTFPTPTSSHARIQRDHGGGMEEELSQTDG
GSSESKGKQRRQPSSFLAEKGPRKSKSQYLQGVSWFVPTEDLKSDPKRGNGSSNVPEPGP
SWFEPLPSGKPWREPLREKNWQEDHSGLQVRLAAPARDIENNPPSPFGKITLQEALALRR
PDFISSAGERVKRLKLIIEERRLQSMLQGEREELFNPPEQRRSYRNSAFLPNRDYRTIRR
KRAISKNEMVQRSKRMYEQLPEVRKRREEEKRKSEYSTNRLKAQLYKTKITNRILGRKVP
WE
NT seq
8649 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaccccagagagagggcagcccagctcttcctattgcgacaacaccaccactt
gctggacagaaggaagaactattaagccaaagcagcagtgggacccagatttctaatgcc
agcggtgtctctttgggagaagtgatacgacgtagatctgctactaactgggagatggaa
gaatggtaccagccttgtacagaagtggatgccagtaatctaatagtggccataggatgg
aagatgagccagacccctggagcttgtgacttgacagagttcacaactatggaggaaggt
tttgttactcctgcagagacttttgggaggcagcaagcacctaatgtgacacacagtcca
atcctagaaattcaggacagttgcctctctcccaaactcccactgctgacgacatacgca
actcaaggccaaaccttcttcaacgagacagtcttccagccagcagaagtggactttgct
gctttgagagggactccagatgtttctcgtactgcttctgaagaggcttccagccatttg
cagatgagagaggctgtgcggctggcaactatggaagttggctcagagtcttccagtgat
tgccttcctctgtctcagcactcactggctatcagcaccatggcacctagcaataccagt
cttggtagctatctgtcccagcatcctctttctctttctgcatgtatgcttacagaacag
aggaattgtaatgaagaagaaacacctcagctcagtatgtgtggtaaaacctttggctcc
aaggatgggatttctggagtcctatcgtcacaaaatttgccaaaccagcagatggcaact
ccactagaatcttggggagctttttcaggccaagatcttttccttttggacagcaatgtg
ccagcccctctcctgcttgaaattctggaagaagaggtggggttatccaagcagtatgga
ttcttatcttctgagagttcttctggtaaaagtgttttaggaaaggatgcagaagaaaat
gaaacaagtcagcaaatggaggatgtagttttggtagaaagacatccggaaacatttgta
gaaccacatcagcaagaagtaggaaacatttctgagcttgacccattaaaagtattttct
gattcagaaagaaagcttggaaatgccagtgatgcagcaaacacttcacaggcattggct
tcctttggggggcagagagtgagtttgggtgactcatgcagtaatactggggtaccttca
agacctttgcagaataaggtgcaggtgcagcatgtctctgaagttgtatttgaagaacaa
aaaagaaagcttgtttcagctgtaactgactgtagacgtaatgtacctctccaaccagcc
actatggctgcagagcatggcaatacagggagcaagcaggtaaattctgtggtggaaacc
cagatgggagcaagcaagaatgaactaacactctcagatttcatcatagagagagagcat
aaggatagtggaatttcaccttcctttaatgagggatcattttttggacatctggctcat
ccagttcatcattctaccccaggactttttacaactcgaaacctgaggcaagaggcttct
ggtatgaccatcccagccaagtctgttctccagtcccctctttcttgcttacgtgaagag
acatctaagaattcttctggtgaagcttgcattccttctgtggaagaacctcgagtgcct
tctggcgatgacactggtgtaccttctgctgaagagcctcttacattccaaagtgaccaa
gaagcaaaaaatgaaagtagtggacatcttagagttttacgtcctcttaaaggcaggatt
cagtctctgccttctcttaatttcatggagaaggtaggggcatggaacacgagtcagtca
gcagagaggatgcctaatgctttggcattagatggttcaagtggcatctcacctaagcag
aagtcttacagtgtcattgcagactccttaaacagcatcttgttgaagcatcaaaaccag
tttgatctcaagccagggttggtgacaccattctgtggaccaaagtccatgaccaatctg
cgttcttatgacaaaaaatcacctcacgctttaccacttactaggtcccagtctgaaaac
tctgtgatggcaatcagcagagaaatgtcaaagactgaagtaggtcatgaaaaaatccag
gattataatcttcaaccagcagaagacaagggccatgcatcaggagattctgaggttaag
caaagtgaggcttgcagagatgatgccaaagagcctcttatccagcatcatacagccgtt
ttagtctccactgtatccagtgatgaagaaagaattgaacatgttggaagtggcaagagc
tcaaatccagataattttattactagtgaacgagtcgctgaactccttagagaagaaact
ggttctcttagtggttgccaggaaaagtctggtggctctccagataatactagagagttg
tcaggcactcaccgttgtaacaaccagattagtatggactgttttagagatgtttcacca
gatagcttaaatcagctaacaagttctgggggaggtagttgtattgacttgagactttcc
tcaggacaatcttcaagacgatcctcagctgtttctgggaagctgcaaagcagtttcaaa
gatgtattgcagacttcagatcacagagaaatgaatatagaagagaggataccggtatac
ctccataaccttggcatcgatcagtcaccttcatcgatactgactccattcgtgcctcga
gggccaatcagagaaattgaactgtctccaactgagctcagaacactgaaagcatctact
gatttgtcaacacagtgtgggcagctgtcagaaggagaccctcactctgttatagatgca
atacagtcaagctttaactcttccatttttagcgggccagttccagcaggatcacatact
ggctctgatagtccactgcccacagagcttccctcacagccttctggagacttgcttggt
cagagcaggactgtctgccgtcagttacagctttgtgctcccccacagccactgtcaggg
gacacatctaaatccccagctgctttgccgtcagcagaactgagccaagtaatcccagaa
gttccttctgattctcattctgaagaggagagggccccagaatgtgtaaagtcactggca
gacataaatgatccaaaggagctcggagtaagtaaagagaaaccattttgtggctctgtg
gctcaagaaaatgctgaaaagggtatgactggagaaactacttctttgtgtgtagattct
gaaggagaaagagattattctttcataggatcagaaacactgaaggaaattgagaagctt
ctggcagaatcagaaagtagaacttcaggcagaaactttaacaccagctccttcgtctcc
tcctccacagaactgggcagctcattgaaacaaatgaaagacatggatgcttctgtaggt
tctggaccagtcaagggaagttatccagggattcagaggatgtggtcatgggatgagaca
ctcaacgggcaaaatgttcaagaagacaatacacgtgccaaaacccttagtctctctggt
cgcttaaaatgggaaggttttcgtgctgtggatattggcagccagaagcaagttgtacca
gaaaagttgaagccgacatgtgaagcagttgctgaagagaacaagggagtgaagcccatc
acacgctctgagccagaaggttgcaatagtgtagtggtaaataaaagtctgcctgtttct
ggaaatagtgctgcaaagagcaacttgagtaaccccagagatctcaaagaatttcaggct
acttctagtgtaaagccctccaacactctggaaaacgttcaacaagttttggagaaaacc
aaaggaggtagcaataaagagatgagtagtagtcacagcagcagcgtggactcactgggt
atgaaagtgaaaacccttctgcgatatgaacctcctgttctgcactcaacacggtggtta
gatgagcaggcatgtggtgaaagtgctcagaagcaaggctcagttggagccagtttagct
ggcagtaaaggggcccccagtgccagtcagagcaaccacagcagcagtctggactccctg
gcggcccgtgtcaaaactcttctggaagatgaacgccccgtgatgcacgccattcagata
ctacagagtgctgaagaagaagaagcaaaagcccatgcctcattgaaactgaagcaggca
gctcaacctgcagactctgtgcctgacctaaatgaggaggatcgacggatgatagaacaa
atcaagagagagcagtatctgaatgccaggacatctggaattcgtaagggtcagctgtgg
agaactggaaaaatttctagccctgatcctatttcaaagctcaacccagaactctcaaaa
ccttcaagtggcaatgagctacaaaaggccattcatacacagaatttcgaaccagttgag
gtaccaaaggtagttcaggctagaccagtgtgtagaactgactgtgcccttcaaagtgag
ccagagacaaagtccataaacagaatacaattccctgcctgtaaccagcttcagacacat
acagataatttcttggactccaaacaaaatgttcatgttcccctgggtagtgccaaagac
ataaatctgatggagttggctggtgcctccagagcacttgtaggagacaaagtgaaagca
tcaacccagttgacagtcagcaactcttccactgaacctgccaagcaaattacttctatc
acatttgcatcccgcaagaggttatattctcctgcttcctgccctggctttcataaagcc
actcctggtaatttagtacctttggaaaggcaaccttttaacaatgaaccgttgaaacct
agtaagccacagcaagaaaatttaaaaccctgtgctttgggagacacagcagctgttcgt
atactggataggagtgttgggttttcctcaggcagaggctctgatcaagacatgtcctta
tttggcgtcaaagaagaaactcatctagaaaagaacattgcattagtagaaaaatcccaa
gccggttgtattgagcaaaaagtcaactttacagaggactacaaggaagctcaaccttct
caaatacttactgagttgagaagatctgacacacttttagatgatgtttgtgataacaat
tctaacccaaaaggcaacatggctgatttgtccttttccataaatgtgtctcagcagaag
acagatgatgcttgtccccaagataagtctgcagattgcaacggaagctttccccacacc
cctgagcctaaaggcaaggagatcatgttggtaaaagagagtagtaaacttacttttgat
tcacatttaggtagggctggagacatagatgtaagaagcagcagtctattaccaccttct
ccagataacaaagccacagtcctagcaggatctccttcgtcaccaaccaggaaagcactg
tctggtgtccacattactttatctccaaagtgtattgatttggatcttcctggtcagttg
gacactggaactgaaatgagacaagttggtgaagttaagaatgcttcagctttaaatgct
tcagctatttcatcagaagctacctcccagttaaaacccagtgaaccttccccaaagact
caggagttttcatattttccaacaccactagcatcagagtctcagtttaagcatcctgat
gttccagttgtagcagaacaagccccacatcgacgtcaggaactgttggaaagcaggcag
aattttccagttcaaagcagtggcagaaatctgggaactggtgggcagagtctggaagag
agctcaaagaacactgctgcttctcaaacagaaaggatgtcatcagatgctatcactcag
ataacaacagaaagccctgaaaagaccatttattcagcagagatatttgtcagcactgac
aacaatgagacggatgctccaagacctcttcctcagaagagacatgaaatcttaagcacc
acaactgctgatgtcaaccagagctcaattttcagcagacaggctgatccaccacttttg
ctgccttataaaccaccagggagctcggaggtgtactatgtcccctgttcgaaggaaact
cttggactttctcggatgaggtcagagactactgtggagagctcccactcaggatcaaat
gacgccatccctcccaaattccctgcacaggtgcttggctcaagggatgagaatcctcca
gatactggagctatcaaacacggggagggtatctatagtaaaaggactgtagtaaagggt
gcttggactcaagaaaaggtgtcatcgtgggaaggtttcaaagaaagtgctgatatcaaa
aaagcccttgaatctgtcaaaacgatccattcagtcttcaagcctggtgagttttacctg
caccacccagtgcctctgcagcatgaaattgactttcttcctagaagtgattccttgagg
cagtgttcagtacaggagcgtccagccccatcttctaaagacttcttccagcacaaggaa
atgacagagagaaggcaggtcccttcctctctacctcaccggaaaaaagaggagcggttt
tccccactgactgctgaactagactacagttttgttgaggggtcaaggttcagcaagcct
tctgagacagactcaccaagaagagaatcaggtcaacctgacaggaggaaaacaggtcat
gaaacggcaaaagagccgctttcaccaggcactcaaaggactggcttaaaagagaagcag
gtggctgatcacccagtgatgcagagcacttattttactggcagtttggatgaactgtgg
actaaatacttagagcgccagaagcagccactgcaacgtatcgctgatagcagtggcaga
aatgagctgtctctggtagagcgacttgatcgattagcaagactcttgcaaaaccctgtt
aggcactcactagtagtgccttccaaggatgagcagagcagtgtccaagaggagatgaag
agaaaagagccaaagaagacaaaatcccaaggaagagtggcatatagaagtaacttggca
tcccatagtaaggtaaaagagagcccagaaattgtcggcagtgcacagttatcaaaatcc
aggtttcataatattggagctaccacagctgttgacctcagggataaagagaagtgccag
gactttgagagtctgagtgacgcctcttcagagatgaggcctgtcaaagactccagtgtt
ttaagtggcaacacctctgaatcaggggtgactcagctggagacagaaagtgccagtagg
acagaagcgagtggttctgtttccaccattgacacagccaggttgatcagggcttttgga
caggaccgagtgcacatctctcccaaactctctcagttgtacagcaacatcagccttcag
aagactcgctctgagaagtggaccaagggaagccgtaaatctaggaccacagatcaccca
aatatggcccgtgcggtgccagcaggaaagaacacgcaggcaacagactctttcatttca
tcagattcagtttcaactgccggtggttcccgaggacccagctcagctctcagtagcaag
aggagcacacggatgttaaacaaggccgttcaggcaggagactttgagattgtcaacagc
gcaaccaagaagcatacacgagatgttgggcagactttccccaccccgacatccagccat
gcgaggatacagagagatcatggaggcggaatggaagaagagctttcccagacggacgga
ggcagttcagagagcaaggggaaacagcggaggcagccgagcagcttcctggcagaaaaa
ggaccaaggaagagcaagtcgcagtatctgcaaggagtttcctggtttgttcccacagag
gatttaaagtcagatcccaagagaggaaatggatccagcaatgttcctgaaccgggtcct
tcatggtttgaacctttgccaagtgggaagccctggcgagaacccctccgggagaagaac
tggcaggaggatcacagtggcctccaggtgcgtctggcggctccagcgagagacatagag
aataacccaccctcaccttttgggaaaattacactccaggaggctctcgcgttgcgccgt
cccgatttcatttctagcgctggggagcgtgtgaaacgcctcaagctaatcatagaagag
agaagattgcaaagtatgctccagggcgagagggaagaattatttaatcctcccgaacag
aggagaagttatagaaattcagcttttctgccaaacagagactaccggactatacggaga
aaaagagcaatttccaagaacgaaatggtacagagatcgaaacgcatgtacgagcagctg
cctgaggtgcgtaaaagaagagaagaggagaaaagaaaatcagaatattctaccaatcgt
ttgaaagcccagctttataaaacgaaaatcaccaaccgcattctgggaagaaaggtaccc
tgggaatga
DBGET
integrated database retrieval system
