Sceloporus undulatus (fence lizard): 121931694
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Entry
121931694 CDS
T07740
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
sund
Sceloporus undulatus (fence lizard)
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sund03019
]
121931694
Enzymes [BR:
sund01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121931694
Messenger RNA biogenesis [BR:
sund03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
121931694
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
Helicase_C
DEAD
CBM_48
Abhydrolase_11
Motif
Other DBs
NCBI-GeneID:
121931694
NCBI-ProteinID:
XP_042325606
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Position
5:137353053..137445820
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AA seq
1658 aa
AA seq
DB search
MGKKKAKNPKVNSAKEKDVFPDIVIGKKKAKGSKAKKASKECAGAVGSSAKNLAKKCGRK
VEKIPSEQELQCFVRQISELILKNLPKAEVSLLNGYVESECILIDGDALFITCAHDSTLQ
QGQNLHFFYLVECFLLNLESKGLKYIIVFFKDAELLYHGNPHLLFLRIALIHHLIKNTDT
AVKTEFYNCLEDNWKRFLNNNSPYFLLTSDEGLNQLQTKFFHIIIIHALFKNINVVLTSG
YEFDTEGIYGYRIHTGQHHWKFFGEHESEIRMYLENEAEHLKASDAESFVSFFGCLSLED
VDEKIIHKMSLIPEEEEDIRYIVCIVSWSLVLNMYNKEQQSKTATTKQNPPLLTLQETAD
LIRMYCLSVAFLYYLPLAERAQIRLIRNNWNEETNMLIHQHKFCEFHVLKNLDCNTSLDI
DTSTLPDLSDNLLWRNIVHYYESGKGPELDLDIKSNIHLCLMYEKLWKGISQLSARLDIG
ASFPLRKTSKCFLTPEFSPNKGNASNMTLPKLELIPMECTLMDEFAGDILNDLSIFKSDT
VTVQTKWRKHNECQSWYSRRPLSEDCAGTDGIYPRKNLREYIRRAIWNAGSVKSQEQISI
ICGGSVRARKNIGDRFMNQWKRWFENHYLLIHFFSWNIKGDYKFLEKYLCFCVFPSVHDN
IFLFFGEAAKELWALQNCPQWQISPCTYGTLEEFTTSKMTDTVLCNSNKNYTDIEKSKEE
HKAKSNIAALDEQKKKCEEQKKGESNMKDLSVPVERKVQEICSSGINMEPTVDKSVQCAV
KMAELNSSLDMWKKHCDSAGQFHKNLNLAVDVMRRVHLLIENYQNVLTEEDFQQIVRCFQ
YFGFDNLIATSEYTKVSEKKDEFKKKFSIYAVGIGSARFQLQYMSQYLMQEERNKPDPRV
QQFIPDSWQREILDIVDKNESAVIXAPTSSGKSXASYYCIEKILREAMKCNSVCCTYTGC
CYQVKATIDSRFNRIFPDGQFLCGVLTQGYRQWSWIVRSVIMEQKLHQNLGTHTSYDPMS
IFGSFCNDQQLQSILLIQDYCINFKKCPTIPPSEDNGAAEVLKLLKPHGDSCSETQMKEL
FPYFVEKLQEMDKLPALFFIFNIRIAEELAKKVCCFLEEKQMLIGEVSSSKNQGHLLATK
TEPADKLTETKQTSIMQTYCEDNEKLIKKVEPGNVRKQFEQISGISGDCTYANYQVVGME
ALHKILNHARFTTTGELQELALRGIGYHHAFMEYKEKQLVEMLFKIGFIQVLTSTGTLAL
GINTPCKSVVFVQDSEYLDPLAYRWMSGRTGQRGHHSVGNVFFYNIPFSKIESFMKSKTI
HIQGQFLLRTSLILRLMLFASKADDKTSAKKRVMSLLKNSLLSFEEPWTLKMLKLYFIFS
LQFLVKEARKTLLYILFQKEIETDSFLIQTGTKVFSEAVMEKLVVVLAHLFGRKYMPAAV
VGSKQKFSRSKVFLEELPEDFAATLDKYNHKVEESFGQFLLTASTVANNRKRYQLPLSKL
DFSNKEQYDHPLAFHIMKCDKERTAISPFVCLSGNSDLELLHAGSLNNVLLHMLGITVSN
IPVLYLKKCDNHGRKMPLNAYLLDFYRHGSLKAICQDNGLHEGEASRSLKDFAHSIQTIS
ISLREFCSSEDRNVVWAFEQLAKSYWKKLEGIEEEGGK
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagaagaaggctaaaaacccaaaagtaaactcagccaaagagaaggatgtattt
cctgatatagtcattggcaagaagaaggcaaaaggttctaaagctaagaaggcttctaaa
gaatgtgcaggagccgtaggctcttcagcaaaaaatctggcaaaaaaatgtggcagaaag
gtggaaaaaattccttctgaacaagaattacagtgcttcgtaagacagataagtgaatta
attttgaagaacctaccaaaagctgaagtcagcttgctgaatggttatgttgagtcagaa
tgtattttgattgatggcgatgcactgtttatcacttgtgcacatgactcaacattacag
caaggacagaatttgcacttcttttacctagtggaatgctttttactgaatttagagagt
aaaggacttaaatacataattgttttcttcaaggatgcagaacttctatatcatggaaat
cctcatctcctttttttgagaatagcattgatacaccacctaatcaagaacactgatact
gcagtaaagactgaattttataattgcttagaagacaactggaagagatttctgaacaat
aactccccatatttcttattaacctcagatgaaggactgaatcaactgcagaccaaattt
ttccatataattattattcatgccttgttcaaaaacatcaatgttgtccttacttcaggc
tacgaatttgatacagaaggaatatatgggtaccgtatccacactggacagcaccattgg
aaattttttggagagcatgaatcagagattagaatgtatctggaaaatgaagcagaacac
ttgaaggcatctgatgcagaatcattcgtctctttttttggttgtttatctctagaagat
gtggatgaaaagatcatccataaaatgtccttaatcccagaagaagaagaggatatccga
tacattgtgtgcattgtgtcatggtcattggtgctcaacatgtacaacaaggaacagcaa
agtaaaactgccactacaaagcagaacccaccattattaacactgcaagaaactgcagac
ctgatcaggatgtattgcctcagtgtggcttttctatattatttacctcttgcggaacga
gctcagattaggcttatcagaaacaactggaatgaggaaaccaatatgttaattcatcaa
cataagttttgtgaatttcatgttttgaaaaatcttgactgtaatacatcactggacata
gatacttctactttgcctgatctgagtgataatctcctgtggagaaacattgtacattat
tatgaatcaggaaaaggcccagagcttgatttggatataaaatcaaatattcatttgtgt
ttgatgtatgaaaaattgtggaaaggtatttcacaactatctgcgagacttgatattgga
gcttcctttccactgcggaaaacttctaagtgttttcttacaccagagttttcaccaaat
aaaggaaatgcctctaacatgacactgcctaagttagagctgataccaatggagtgtaca
ctaatggatgaatttgctggcgatattttgaatgacctatctatttttaaaagtgatact
gttaccgtgcaaacaaagtggagaaaacataacgaatgtcagtcctggtattcaagaaga
cccctcagtgaagactgtgctggtacagatggcatctatccccggaaaaacttaagagaa
tatataagacgtgcaatttggaatgctggaagtgtaaaaagccaggagcagatttctatc
atatgtggtggaagtgtgagagcacgaaaaaatattggagatcgattcatgaatcaatgg
aaaagatggttcgagaaccattaccttttgatccactttttttcatggaatattaaagga
gattataaatttttagaaaaatacctgtgtttctgtgtgttcccctctgtgcatgacaat
atatttctattttttggagaagctgccaaggaactatgggctctacaaaactgtccacaa
tggcaaatatctccatgtacttatggaacacttgaagaatttactacttcaaaaatgact
gatactgtgttgtgtaactcaaataagaattatactgatattgagaagagcaaagaagag
cataaggcaaaatccaacatagcagctctggatgaacagaaaaagaagtgtgaagaacaa
aaaaaaggagaaagtaatatgaaggacctttctgtaccagttgagaggaaagttcaagag
atctgcagttctggaattaacatggagccaactgtcgacaagtctgtgcagtgtgcagtt
aaaatggctgagctgaattcttcccttgacatgtggaaaaaacattgtgacagtgcaggg
caattccataaaaatttaaatttagcagttgacgttatgaggagagtccatttgttgatt
gaaaactaccagaatgttttgacggaagaggattttcaacagattgtcagatgttttcag
tattttggatttgacaatttgatagccacttcagaatacacaaaggtttcagagaagaaa
gatgaatttaaaaagaagttttcaatatacgctgttggcatagggtcagctcgatttcag
ctacagtatatgagccagtacctgatgcaggaagagagaaacaaaccagaccccagggtg
caacaatttataccagattcatggcagagagaaatccttgacattgtggataaaaatgaa
tctgctgtgatcnatgctcctacatcatcaggaaaatcanaggcctcttattattgcatt
gaaaaaattttgagagaggcgatgaagtgtaatagtgtatgttgcacctacacaggctgt
tgttatcaagtgaaggcaactattgacagtcgatttaacagaatatttccagatggccag
ttcctatgtggggttctcacacaaggttatcggcagtggtcctggattgtcagatctgtt
atcatggagcagaagttacatcaaaacttgggaacacatacttcttatgatccaatgtcc
atttttggttctttctgcaatgatcagcaacttcagagcatcttactgatacaggattat
tgtattaattttaaaaaatgccccacaattcctccttctgaagacaatggagctgctgaa
gtgctaaaactgctcaaacctcatggtgattcctgctctgaaacgcaaatgaaggaatta
tttccatattttgttgaaaaactacaagaaatggataaattgcctgcactttttttcata
ttcaatattaggattgctgaagaactggctaaaaaggtatgctgtttcttagaggagaag
caaatgcttataggagaagtctccagctctaaaaatcaaggacatttattggcaacaaag
actgagccagctgataaattaacagagacaaaacagactagcatcatgcaaacatactgt
gaagataatgaaaagctaattaagaaggtagaacctgggaatgttaggaaacaatttgag
cagatttctggaataagtggtgactgcacttatgcgaattatcaggttgttggcatggag
gctttgcacaagatacttaatcatgcaagattcacaacaactggagaactgcaggagctg
gccctaagagggatagggtaccatcatgcctttatggaatataaagagaagcaacttgta
gagatgcttttcaaaataggatttatccaggtgctgacatctacggggacccttgcttta
ggaatcaacacgccatgtaaatctgttgtctttgtacaggattctgagtatttggatcct
ctggcctatagatggatgtctggacgcactgggcaacgaggtcatcactcagtgggaaat
gtatttttctacaatattccattctccaaaatagagagtttcatgaaatcgaagacaatc
catattcagggacaatttcttctgagaacatctctgatattgagacttatgctgtttgct
tcaaaagcagatgacaaaaccagtgcaaaaaaaagggtgatgtcattactgaagaattca
cttctatcctttgaagaaccttggactctgaagatgttgaaactctatttcatcttttct
ttacagtttcttgtcaaagaggcaaggaaaacgttattgtatatactttttcaaaaagag
attgaaactgatagctttctcattcaaacaggaacaaaagtcttttctgaggcagtgatg
gaaaagcttgttgtggtattagcacacctttttggaagaaaatatatgcctgctgctgtt
gttggatccaaacagaaattttccagatcaaaggtattcctggaggagctccctgaagat
tttgcagctactttagataaatacaaccataaagtagaagagagctttggacaatttcta
ctgacagcttccacggttgcaaacaacagaaaaagatatcaacttcctctttcaaaactc
gatttttcaaacaaagagcaatatgaccacccattggcctttcacataatgaagtgtgat
aaagaacggacagcaatttcaccttttgtgtgcctctcaggaaattcagatcttgaatta
ctgcatgcagggtctctcaacaatgtcctattgcacatgttaggtattactgtttcaaac
atccctgttctttatctgaagaaatgtgataatcacggaagaaaaatgccactcaatgcg
tatttgcttgacttctacagacatggttctttgaaggctatatgtcaagataacggactt
catgaaggagaagcctctcgctctttgaaagactttgctcattccatccaaacaatcagt
atttctttgcgtgaattctgtagcagtgaagatcgcaatgttgtgtgggcttttgaacag
ttggccaaaagttactggaagaaactggaagggattgaagaagagggggggaaataa
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