Sceloporus undulatus (fence lizard): 121932687
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Entry
121932687 CDS
T07740
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121932687 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sund03041
]
121932687 (DDX42)
Enzymes [BR:
sund01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121932687 (DDX42)
Spliceosome [BR:
sund03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121932687 (DDX42)
Complex B
121932687 (DDX42)
Complex C
U2 SnRNP specific factors
121932687 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
121932687
NCBI-ProteinID:
XP_042327511
LinkDB
All DBs
Position
6:97019945..97040751
Genome browser
AA seq
930 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFSISSGKKEEPKLPQQSHSAFGATGSSAGFGKTPPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSNNVDLPYIPAENSPTRQQFHSKERDSDSEDDPLEAFM
AEVEDQAARDMKRLEDKDKERKNTKGIRDDIEEEDDQEAYFRYMAENPNAGVVPEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGIPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSVASHVRPERQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDITQIVEIFAS
GPNKWNWLTSRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHDLGLLHGDVDQSERNKV
ISDFKKGTFPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTHKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSESADRGSNNVMVNYEAYKPSSGAMGDRLSAMKAAFQSQYKSHFVAASFSNQK
TGSSSAGASGWTSAGSLNSVPTNAAQQNLAKPDSPMSTAGMAKGIPGFTSSGNLNSIPNF
PSTGVQGFNSVNASNSSKEGNSGGRERYSDNRSSSRHSDGQRHGEGGGRHSDNQRHGEGY
RHGENRHGDSHRHSESRHSSGGNNTSSRHGDGRNNGDGRNNGDSRNSNENRNSENRNSES
KKDGNIRDNSKTDGFAVPEPPKRKKSRWDS
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaacaaaggtggtcctggtaccaagagaggctttggttttggtggcttctca
atatcatctggaaagaaggaagagcccaaactccctcagcaatcccacagtgcttttgga
gccacaggttcttcagctggctttgggaagactccaccacctcagctgccttctttttac
aagattggatcaaaacgagcaaactttgatgaggagaatgcctactttgaggatgaagag
gaagattccaataatgttgatttaccctacattcctgctgagaattctcctactcggcag
cagttccattccaaagaacgtgactcagacagtgaggacgacccactggaggccttcatg
gcagaagtggaggatcaagctgctagagatatgaagagactggaagataaagataaggaa
agaaagaatacaaagggtatacgcgatgatattgaagaagaagatgatcaagaagcttat
ttccgctacatggcagaaaatcccaatgctggtgtggttccagaagaagaggaggataac
ctggaatatgacagtgatggcaatccaatagcaccatccaaaaaaataattgaccctctt
cctcctattgatcattcagagattgaatacccgccatttgagaagaacttctatgatgag
catgaagagatcaccagcctcacaccacagcaagtggtggagctgcgccataaactcaat
ctcagggtctctggtgctgctcctccaaggccaggtagcagttttgctcattttgggttt
gatgagcagctcatgcaccagattagaaaatcagaatacactcaaccgactcctatccag
tgccagggtatcccagtggcactgagtggcagagacatgattggtattgcaaagactggc
agtggaaagactgcagctttcatttggccaatgttaattcacatcatggatcagaaggaa
ctggagccaggggatggccccattgcagtgattgtctgtccaaccagagaactgtgccag
cagatccatgcagaatgcaaacgctttgggaaggcctacaacctacgttcagtagctgtg
tatggtggcggaagcatgtgggagcaagccaaggctctgcaagaaggggcagaaattgtt
gtctgtactccaggccgtttgattgatcatgtaaagaagaaagcaacgaacctgcagaga
gtcacctaccttgtgtttgatgaagctgacagaatgtttgacatgggatttgaataccaa
gtccgatcagttgccagccatgtgcgtcctgaaaggcagactctgctcttcagtgccact
tttcggaagaagattgagaaactggccagagacattctgattgacccaattcgagtggtg
caaggagacattggagaggccaatgaagacatcactcaaattgttgagatctttgcttct
ggtcccaacaagtggaactggctaactagccgcctagtggaattcacctcttcagggagt
gtcctcctgtttgttaccaagaaggcaaatgcagaggaactggccaacaaccttaagcaa
gaaggacatgatctggggctgctgcatggtgatgtggatcagagcgaaaggaacaaggtc
atctcagatttcaagaaggggactttcccagttctggttgccaccgatgtggcagctcgt
ggtctggatattccttctatcaagactgtgatcaattatgatgtggctcgtgatattgat
acccacactcaccgaattggtcgtaccggcagagcaggggagaagggcgtggcctacact
ttactgacgcacaaggacagcaattttgctggagatcttgttcggaatttagaaggggcc
aatcagcatgtttcaaaagaactcttggatttggccatgcagaatgcttggttccggaaa
tcccgtttcaagggaggaaagggcaagaagctaaacattggtggcggtggtctagggtac
cgtgaacgccctggcctaggatcagaaagtgcagaccgtgggagtaacaatgtaatggtc
aactatgaggcatataaaccatcctcgggagcaatgggggacaggctgtctgccatgaaa
gccgcattccagtcccaatataagagtcattttgttgctgccagctttagcaaccagaag
acaggcagctcatcagcaggggccagtgggtggaccagtgcaggaagtttgaactccgtg
ccaacaaatgcagcacagcagaacttagcaaaacccgacagtcccatgagcacagcagga
atggcaaagggtatcccaggcttcacaagcagtggaaacttaaatagcatccccaacttt
ccaagcactggagtgcagggatttaacagtgtgaatgccagcaacagcagcaaagaaggc
aacagtggaggcagagaaaggtacagtgacaaccgcagcagcagtcgccatagtgatggc
cagcgccatggagaaggtggtggccgccacagcgataaccaacgccacggggaaggttac
cgtcatggagaaaaccgccatggagacagccaccgtcacagtgaaagcaggcattctagt
ggtgggaacaataccagtagccgccatggggacggtcggaataatggggacggtcggaat
aatggggacagccggaacagcaacgaaaacagaaacagcgagaataggaatagtgagagc
aagaaagatggtaacatcagagacaacagcaagacagatggttttgcagttcctgaaccg
ccaaagcgcaagaagagccgatgggacagctaa
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