Sceloporus undulatus (fence lizard): 121933590
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Entry
121933590 CDS
T07740
Symbol
DDX6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121933590 (DDX6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sund03019
]
121933590 (DDX6)
03036 Chromosome and associated proteins [BR:
sund03036
]
121933590 (DDX6)
Enzymes [BR:
sund01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121933590 (DDX6)
Messenger RNA biogenesis [BR:
sund03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121933590 (DDX6)
mRNA degradation factors
5'-3' decay
Decapping complex
121933590 (DDX6)
Chromosome and associated proteins [BR:
sund03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121933590 (DDX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
121933590
NCBI-ProteinID:
XP_042329486
LinkDB
All DBs
Position
6:145991255..146005471
Genome browser
AA seq
506 aa
AA seq
DB search
MSTARTENPVIMGLTSQNGQLRGPVKPSGGPGGGGTQAQQQINQLKHPNTINNGTQQQAQ
SMASTIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVED
EKPTLKREDSQAQAYLRFQIQPQPLA
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggccagaacagagaaccctgttataatgggtctcaccagtcagaatgggcag
ctgaggggcccagtgaaacccagcggcggcccaggaggcggaggaacacaggctcagcaa
cagataaaccagctgaaacatcccaacacaatcaacaacggcactcagcagcaagcacag
agcatggcctccactatcaaacctggcgatgactggaagaagactttaaaactccctcca
aaagatttgagaatcaaaacttcggatgtgacatccacaaaaggaaatgaatttgaagat
tactgcctgaaacgggagttactgatgggaatttttgaaatgggctgggagaaaccatct
cctattcaggaggagagcatccccattgctttgtctgggagggatatcttggctagagca
aagaatggaactggcaagagtggcgcctacctcattcccttacttgaacggcttgactta
aaaaaggacaacatacaagcaatggtgatagttcccacacgcgagcttgccctgcaggtc
agtcagatctgcatccaggtcagcaaacacatgggaggggccaaagtgatggctaccacc
ggaggaaccaacctacgtgatgacataatgaggctggacgacacagtgcatgtggtgata
gctacaccagggaggattctcgatctcatcaagaaaggagtagcaaaagtggatcatgtc
cagatgattgttctagatgaggcagacaaattgctctctcaagattttgttcagataatg
gaggacatcattctcaccttacccaaaaacaggcagatcttgctctactctgccacattt
cctctcagtgtacagaagtttatgaattcccacttgcagaaaccctatgagattaacttg
atggaggagctgaccctgaagggagttacccaatactatgcttatgtgactgagcgtcag
aaagtgcattgtctcaacacactcttctccaggctccagataaaccagtcgatcatcttc
tgcaactcttctcagcgggttgaattgctagctaagaaaatctcccagctggggtattca
tgtttctacatccatgcaaagatgagacaggagcaccgcaatcgtgtgttccatgatttc
cggaatggtttatgccgcaatcttgtttgcactgatctgtttacccgaggtattgatatc
caagctgtgaatgttgtgataaattttgattttccaaagctggcagagacatatctccac
cgtattggcagatcagggcgatttggccaccttggcctggccatcaacttgatcacttat
gatgatcgattcaacctgaaaagtattgaagagcagctgggaacagaaatcaagcccatc
cctagtaatattgacaagagcctgtacgtggcggagtaccacagtgagcccgtagaagac
gaaaaaccaactctgaaaagagaagactcccaagctcaagcttacctgcgattccagatt
caaccccagccgcttgcctga
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