Sceloporus undulatus (fence lizard): 121933599
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Entry
121933599 CDS
T07740
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03020
RNA polymerase
sund03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121933599 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
121933599 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sund03021
]
121933599 (POLR2A)
03400 DNA repair and recombination proteins [BR:
sund03400
]
121933599 (POLR2A)
Enzymes [BR:
sund01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121933599 (POLR2A)
Transcription machinery [BR:
sund03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121933599 (POLR2A)
DNA repair and recombination proteins [BR:
sund03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121933599 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
121933599
NCBI-ProteinID:
XP_042329502
LinkDB
All DBs
Position
6:complement(116919751..116952909)
Genome browser
AA seq
1969 aa
AA seq
DB search
MHGGAPSGDSACPLRTHKRVQFGILSPDEMKRMSVTEGGIKYPETTEAGRPKLGGLMDPR
QGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKVLRCVCFFCSKLLVDS
NNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQSEGDEDITKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFILGMDPK
YARPEWMICTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWST
FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
CIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMG
HDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV
EFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEEMVKDILSNAHIQNELEREFEKMKE
DREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINTRLPSDLHPIKVVEGVKELSKKLV
IVNGDDPLSKQAQENATLLFNIHLRSTLCSRRMIEEFRLSGEAFDWLLGEIESKFNQAIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTV
FLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPD
FDVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
AAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGVGGPTGM
FFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTS
PSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSP
KYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5910 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggcgcgccttccggggacagcgcgtgcccgctgcgcacacacaagagagtc
cagtttggcatcctcagcccagacgaaatgaaacggatgtccgtgacggaaggagggatc
aagtaccctgaaaccacagaagcgggccgccccaagttggggggcttaatggaccctcgg
cagggtgtcattgagaggaccggacggtgccagacctgtgcaggcaacatgacagaatgt
cctggccactttggacacattgagctggccaagcccgtcttccacgtcggcttcttgggc
aagacaatgaaagtcctccgctgcgtttgcttcttctgctccaaactgctggttgactct
aacaatccaaagattaaagatatcctggccaaatccaaaggacaaccgaagaaacgcttg
actcacgtctatgacctttgcaaaggcaaaaacatctgtgaagggggagaagagatggac
aacaagtttggtgtggagcaatcagagggcgatgaggacatcacaaaggaaaagggccat
ggcggctgtgggcgctaccagcctaggatccggcgctcgggccttgagctttatgccgaa
tggaagcacgtcaatgaggactcacaggagaagaagatcctcctgagcccggagcgggtg
catgagatattcaagcgcatctcagacgaggaatgcttcatccttggcatggaccccaaa
tacgcccggcctgaatggatgatatgcacggtgcttcctgtcccaccgctttctgtcagg
cctgctgtggtcatgcagggctctgcccggaatcaggatgacttgactcacaaactggcc
gacattgtgaagatcaacaaccaactccggaggaatgaacagaatggggcagctgcccac
gtcattgccgaagacgtcaaactgctgcagtttcatgtggccaccatggtggacaacgag
ctccctgggctgccccgtgctatgcaaaaatcgggacggcctctgaagtctctgaagcag
aggctgaaggggaaagaggggcgtgtgcgagggaacctgatgggaaagcgagtggatttc
tctgcccggacagtcatcacgccagatcccaacctctccattgaccaagtgggagtgccc
cgctccattgctgccaacatgacctttgctgagatagtaacacccttcaacattgacagg
ctccaggagttggtccgcagaggcaacagccagtatcctggagccaagtacattatccgg
gacaatggtgacaggattgacctccgttttcaccctaagcccagcgacctgcacctgcag
atcggctacaaggtagagcgacacatgtgtgacggagatattgtcattttcaaccgtcaa
ccaacgttgcacaagatgtccatgatggggcacagggtccggattctgccatggtcaact
ttccgcctcaatctcagtgtgactactccctacaacgctgactttgacggtgatgaaatg
aacctgcacctcccccagtccctcgagacacgggcagaaatccaggaactggccatggtg
ccccgtatgattgtcacgccccagtccaacagacccgtcatggggatcgtgcaggacact
ctcacagctgtccgcaagttcactaagagagatgtcttcctggaaaggggtgaagtgatg
aatctcctaatgttcctgtctacctgggatggcaaagtaccacagccagccattctcaaa
ccgcgcccactctggactggaaagcagatcttctccctcatcatacctggtcacatcaac
tgcatccggacacatagcacccacccagatgatgaggacagtggtccctacaaacacatc
tcccctggagacactaaggtgattgttgaaaatggcgagttgatcatgggcatcctgtgc
aagaagtctttgggtacttctgctggctccctagtccacatctcctacctggagatgggc
catgacgtcacacgcctcttctacagcaatatccagactgtcatcaacaactggctcctg
attgaaggtcacacaattggtattggggactccattgctgatgccaagacctaccaggac
attcagaacaccatcaagaaggccaaacaagatgtgatagaggtcattgagaaggcccac
aacaatgagctggagcccacccctggcaacacgctgcgacagacctttgaaaaccaagtc
aacaggattctgaatgatgcccgagacaagaccggttcttcagcccagaagtccctctca
gagtacaacaacttcaagtccatggtggtgtcaggagcaaaaggctccaagattaacatc
tcacaagtcattgctgtggtgggacagcagaacgttgaagggaaacgtatcccatttggc
ttcaagcatcgtacactgcctcacttcatcaaggatgactatggtcctgaaagcagaggc
tttgtagagaactcgtacctggctggcctgaccccgacagagttcttcttccacgccatg
ggaggcagagagggattgattgacacagctgtcaaaaccgcagaaactggttacatccag
cgtcgactgatcaaatctatggagtcagtgatggtgaagtacgatgccacagtgcgcaat
tccatcaaccaggtggtgcagctgcgttatggtgaagatggtctagcaggggagagtgtg
gagttccagaatctggccaccctcaagccttccaacaaggcatttgaaaagaagttcaaa
tttgactacacaaatgagcgggcgctacggcgcaccctgcaggaagagatggtgaaggac
atcctcagcaatgcccacatccagaatgaattggagagagagtttgagaagatgaaggag
gaccgggaggtgctgagggtcatcttccccacaggggacagcaaggtggttcttccctgc
aacttgctacgtatgatctggaatgctcagaaaattttccacatcaacacccgcctgccc
tctgacttgcatcccatcaaagtggtggagggtgtgaaggaattgagcaagaagctggtg
attgtgaatggtgatgatcccctgagcaaacaggcccaggagaatgccaccctcctcttc
aacatacacttgcgctctacactctgcagccggcgcatgattgaagagttccgtctaagt
ggggaagcttttgactggctgctaggcgagattgaatctaaattcaaccaggccattgct
catcctggtgagatggtgggggccctggctgcccagtccctgggtgagcctgccactcag
atgaccctgaacaccttccactatgccggtgtgtcagcgaagaacgtaacgctgggtgtg
cctcgactgaaagagctgatcaatatctcaaagaaacccaagaccccctcactgacagtt
ttcctgctgggccagtctgcgcgtgatgctgagagagccaaggacatcctttgccgcttg
gagcatacgaccctgcgaaaggtgacagccaacactgccatctactatgatcccaaccca
caaaatactgtggtggccgaggaccaggagtgggtgaatgtttactatgagatgcctgac
ttcgatgtcacccgcatctcgccttggctgcttcgggtggagctggaccgcaagcacatg
actgaccgcaagcttaccatggagcagattgcagagaagatcaatgctggttttggggat
gacctgaactgcatcttcaatgatgacaatgctgagaagctggtgctgcggatccgcatc
atgaacagtgatgagaacaaaatgcaagaggaggaagaggtggtggacaaaatggatgat
gacgtcttcctgcgttgtattgaatctaacatgctgactgatatgactcttcaaggcatc
gagcagatcagcaaggtatacatgcacctgccccagacagacaacaagaagaaaatcatc
attactgaagatggggaattcaaggccctgcaggagtggatcctagagacagatggcgtg
agcctcatgcgagtgctgagcgagaaggatgtggaccctgtccgcaccacatccaatgac
attgtggagatcttcacggtcctgggcattgaggcagtgaggaaggcgctggagagggag
ctgtaccatgtcatctcttttgatggttcctatgtcaactaccgccatctggcactgctc
tgtgacaccatgacttgccgtgggcacttgatggccatcactcgacatggtgtcaaccgt
caggacacagggcccctcatgaaatgctcctttgaggagacggttgatgtcttgatggaa
gcagccgctcatggtgaaagtgacccaatgaagggtgtctcagagaacatcatgttgggc
cagcttgctccggcaggcactggctgctttgacctcctgttagatgcagagaaatgcaaa
tatggcatggaaatccccaccaacatccctggattaggcgtcggtggacctactggcatg
ttctttggctctgctcccagccccatgggtggaatgtcgcctgccatgaccccgtggaac
caaggtgctacaccagcctatggagcctggtctcctagtgttgggagtggaatgactcct
ggggcagctggtttttcacccagtgctgcctccgatgccagcggcttcagccctggctat
tctccagcctggtcccccaccccaggttctcctggatctccgggaccttccagcccatac
atcccctcaccaggtggtgccatgtcacccagctattccccaacatctcccgcctacgaa
ccccgctcccctggagggtatacaccacagagccccagctacagccccacatcaccctcc
tacagcccaacctctccttcatactctcctactagccccaattacagccccaccagcccc
agctacagcccaacctcacccagttactctccaaccagccccagctatagcccaacctca
cctagctacagtcctaccagccccagctacagccccacgtcaccaagttactctccaacc
agtcctagctacagcccaacatcacccagctacagccccaccagcccaagctacagccca
acgtcacccagctatagccctactagcccaagctatagcccaacatcgcccagttacagc
cccaccagtcccagctacagtcccacatcgcccagctacagccctaccagccctagctac
agcccaacaagccccaattacagcccaacgtctccaaattataccccgacgtctcccagt
tacagccccacctctcccagttacagtccaacctctcctaattataccccaacatctcca
aactacagcccaacttcccccagctattctccaaccagtccttcctacagccctacctcg
cccagctattctccctccagcccccgctataccccacagtcccctacttacaccccctct
tctcccagttacagccccagttcacccagctacagcccaaccagccccaagtataccccc
accagcccatcctacagcccaagctccccagaatacaccccaacatcccccaagtacagc
ccaaccagccccaagtacagcccgacttctcccaagtacagcccgacttcgcctacctac
agccccaccacacccaagtacagcccgaccagccccacctactctcccacctcacccgtc
tacacccctacttctccgaagtacagtccgacaagtcccacctactcgccgacatccccc
aagtacagcccgacttctccgacctattcgccaacctctccgaaaggctccacctactcg
ccaacctccccaggttacagcccaacctcgccaacttacagcctcaccagcccagccatc
agcccagacgacagcgacgaagagaactga
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integrated database retrieval system
