Sceloporus undulatus (fence lizard): 121934814
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Entry
121934814 CDS
T07740
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121934814 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sund03032
]
121934814 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
sund03400
]
121934814 (TOPBP1)
DNA replication proteins [BR:
sund03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
121934814 (TOPBP1)
DNA repair and recombination proteins [BR:
sund03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
121934814 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Sacchrp_dh_C
Motif
Other DBs
NCBI-GeneID:
121934814
NCBI-ProteinID:
XP_042331626
LinkDB
All DBs
Position
6:complement(55272567..55319311)
Genome browser
AA seq
1513 aa
AA seq
DB search
MMKGSKEPYLVKFIKSSENSDFFHQALESIKEFQSEEYLEILENEAALRIQENDKSLYIC
DPFSGPVFNHLQKLGCRIVGPQVVIYCMQNQRCVPRADYPVFNMTMADVTISCTNLQKET
REEVHKYVQMMGGRIYRDLNVLVTHLIAGEVGSKKYLVAANLKKPILLPSWIQVLWNKSQ
HRMIRYTDINMDDFLCPLFLGCTVCVTGLSSVDRKEVQRLTTENGGQYTGQLKMNECTHL
IVKEPKDSLSRPTILYRSFRAAFPSIRQKYECARRWNVHCVSMQWFFDSIEKGFCQDESM
YSVIPKPKEANAPNTSTPTSQASNLDSRTLSDVSHISNINLTGINETSCSPPMNNRVDHP
SDELNNLDISSLQAPEDLLDGCRIYLCGFSGRKLDKIRRLINSGGGVRFNQLNEDVTHVI
VGDDDNELKQFMKKTVQRPYAVTVQWLLECFKKGYLLPEEQYIPENYQPVNSPVFEHPVF
LKKNSGLKKETVNIQQAPEADADLLSQYITQDSTVVVAGGCNDTDRTTFQEGNEFTALGE
TSTIVEGALLSGKRFLLQGFGREDESCMKALIEENAGKVLSPESKAVADYAVVPLLGYTV
EPTVGDVVTNTWLVMCVEQQTLLDPQSSPLFTPVPMKEGTTPLEQCVLSFSQFSGAERDS
LIYLANLLGARVQEFFVRKANPRKAMLVSTHLVVKEPEGSKYEAAKKWNLPAVTMAWLLE
CSRTGEKADESKFLIDSVVTKGNQLDEGLTDASPSNMPDQPNNLFETEKRTAVTPLDMNK
FQSKAFRTVISHHIGKKPSPPLGGNPLQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAA
LETPEGASQRNRTLSTPLSEVIGRNLKVALANSTRQAAALTASPQLKEAPQEIVEESKPL
ADVVICVSKKLSKKQSELNAIAASLGADYRWCFDETVTHFVYQGRQNDNNREYKSAKERG
IHIVSEHWLLESAQEYKRLPESLYPHTYNPKMSLNISGVQDDRFSDRLDSTGKMGKEHEN
ISLDDNAIEGQLKEAIPVEKEENTSKGVLTQTLEMRENFQRQLQEIMTATSLPKLQGQRT
SLSRNGFDSDPATPDGPRSVRNGRSKVLEALRQTRQIVTDVNTEPSQNEQIIWDDPTARE
ERARLASNMQWPNSPSQCSEQMQGNAVNLGDGSHRKSLSDTEIAQIGVDDPVKTDTVEVP
RSPVCRSPETPQNEDHLIPTPLAPTIAFPLANPPVAPQPKENAIKIDAKASEEPENQRKF
QLSSLNPQERIDYYHLIEELGGVVLEKQCFDPNCTHTIVGHPLRNEKFLASMAAGKWVLH
RSYLEASRAAQCFVEEEDYEWGSNSILSVLPGINVVQRKLAVAAMRWRKTIQRWRKENGI
AEGAFSGWKVILNVDPAKEAGFKRLLESGGAKVLPAHSPPHFREVTHLFADFNKLKPEDI
RIDVGEAAHQGVNCLRPEYIADYLIQELPPPMENYHLPEAAAYLQNGKEHRSGSSQKRKA
PEETHTVKRFRMH
NT seq
4542 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaaggtagcaaggaaccatatcttgtgaaatttatcaagtcttcagagaactca
gattttttccaccaggcccttgagtccattaaagaatttcagtcagaagaatatcttgag
attcttgaaaatgaagctgcactgagaatacaggagaatgacaaatctctttatatatgt
gatccattcagtggccctgtttttaatcaccttcaaaagcttggttgtaggattgttgga
ccacaggttgttatctattgtatgcagaaccagcgatgtgtcccaagagctgactatcca
gtatttaatatgacaatggctgatgtaacaatatcatgtacaaatcttcaaaaggaaacc
agggaagaggtccataagtatgtacaaatgatgggtggccgcatatacagagatcttaat
gtattagtaactcatcttatagctggagaagttggaagcaagaaatacttagttgctgct
aatttgaaaaaacccattttgcttccctcttggatacaagtattatggaataaatcacaa
catagaatgatcagatacacagacataaatatggatgacttcttatgccctttgtttctt
ggctgtacagtatgtgtaactggtttgagcagcgtggaccgaaaagaggttcagcgtctc
accacggaaaatggtggtcagtacacagggcaactcaagatgaatgaatgtacccacctt
attgttaaagagccaaaagacagtctttccagacctaccattctttatagaagctttcga
gcggcttttccttcaataagacagaaatatgagtgcgcaagaaggtggaacgtccattgt
gtatctatgcagtggttttttgatagcattgaaaagggattttgccaggacgaatcaatg
tattcagtaatccctaaaccaaaggaagcaaatgcaccaaatacgtcaactcctactagc
caagctagcaaccttgacagtcgaaccctctcagatgtcagccacatttcaaacatcaat
ttaacaggcattaatgaaacatcttgtagccctcctatgaataacagagtggaccatcct
tctgatgaactgaacaacttggatattagttctttacaagcacctgaagatttacttgat
ggatgccgaatttacctttgtggtttcagtggcaggaaattagataaaattagaaggctt
atcaactctggaggtggtgtccgttttaatcaactcaatgaggatgtgacacatgtcatt
gtgggtgatgatgataatgaactaaaacagttcatgaagaagacagtgcagagaccatat
gctgtgacagtacagtggcttttggaatgctttaaaaaaggttatctactgcctgaggag
caatatatccctgaaaactaccaaccagtgaacagtccagtttttgagcatcctgtcttc
ctcaaaaaaaatagcggcttgaagaaagaaactgtgaatattcaacaggctccagaagca
gatgctgatctgttgtctcagtatataactcaggattccacagtagtcgttgctggtggc
tgtaatgatactgatcgcactacctttcaagaaggaaatgagtttactgccttgggtgag
acatctaccattgttgaaggtgccttgctcagtgggaaaagatttctgcttcagggcttt
ggtagagaagatgaatcttgcatgaaggctttgattgaagagaatgctgggaaggttctg
tctccagaaagtaaagcagttgctgactatgcagtggttcccctccttggatacactgta
gagccaactgtaggagatgtggttacaaatacatggctggtgatgtgtgtagaacagcag
accctgctagatcctcagtcaagtccgcttttcacaccagtaccaatgaaagaaggaact
accccattagaacagtgtgtactgtctttcagccaatttagtggggcagaaagagattct
ttaatatacctagcaaatctgcttggtgcaagagttcaagaattctttgtgaggaaagcc
aatccaaggaaggcaatgcttgtcagtactcacctggtagtgaaagagccagagggctcc
aaatatgaagctgcaaagaagtggaatctcccagctgttactatggcttggctgttggag
tgttcaaggacaggagaaaaggccgacgaaagcaagttcctaattgacagtgtagtcact
aaagggaatcagctagatgaaggactgacagatgcttcaccctcaaatatgccggatcaa
cctaacaacttgtttgaaactgagaagagaacagctgtaacacctctggatatgaacaag
tttcagagtaaagctttccggactgttatctcacaccatattggtaaaaagccaagtcct
ccactgggtggaaacccattacagaaagaaccttctctgcacctggacacgccatctaaa
tttttatctaaagacaagctcttcaagccttcttttgatgttaaggatgctctagcagct
ttggaaactccagaaggtgccagccagcgaaacagaacactgagcactcctctttcagaa
gtcattgggaggaacctaaaagtggctttagcaaatagcacccggcaagcagctgctctt
actgctagtcctcagttgaaagaggcacctcaagaaattgtggaagagtctaaacctcta
gcggatgttgtcatatgtgtgagtaagaagctcagtaaaaagcagagcgagttgaatgct
attgctgcatcccttggagcagattataggtggtgttttgatgaaactgtgacccatttc
gtttaccagggaaggcaaaatgataataaccgggaatacaaatctgctaaagaaaggggc
atacacatcgtttcggaacattggcttttggagagtgcacaagaatataaacgactacct
gaatctctgtatcctcatacctataatcctaaaatgagtctgaatattagtggtgtccaa
gatgacagattctctgataggcttgactcaactggaaaaatggggaaggaacatgagaat
atttcattggatgataatgctatagaaggacaactaaaagaggcaattcctgttgaaaaa
gaagaaaatacatcaaaaggagtgttaacacagacactggaaatgagggaaaactttcaa
aggcagctacaagaaatcatgactgcaacatccctaccaaagttgcaaggacaaaggacc
tctttatctaggaatggatttgacagtgatccagcaactccggatggacctcgttctgtg
cgtaatggccgcagcaaagtcttggaagccctaaggcagactcgccagatagtgactgat
gtcaatacagagccatcccagaacgaacagattatttgggatgatcccactgcaagggaa
gagagggcgaggcttgccagcaatatgcagtggcccaatagcccttcacaatgttccgag
caaatgcaaggaaatgcagtaaatttgggtgacggttcacatagaaaatccttgagtgat
acagaaattgcacaaataggtgttgatgatcctgtgaaaacagatacagttgaggttcca
agatccccagtgtgcagaagtccagaaaccccccaaaatgaagatcatctgatcccaact
ccattggcacccaccattgcctttccactggcaaaccctcctgttgctccccagccaaaa
gaaaatgccattaaaatagatgcaaaggcctccgaagaaccagaaaatcagcgtaaattt
cagctgtcttcccttaaccctcaggaacgaattgattattaccatctgattgaggaacta
ggtggagtggtacttgagaagcagtgctttgacccaaattgtacacatacaattgtggga
caccctcttcgcaatgagaaattcttggcatcgatggcagctggaaagtgggtgctgcat
cgttcctacctagaagcatccagagcagcacagtgctttgtagaggaggaagattatgaa
tggggaagtaactccatactcagtgttctgcctggaatcaatgtagtccagaggaaatta
gcagttgcagcaatgaggtggcggaaaacaattcagagatggagaaaggaaaatggaatt
gctgagggagcatttagtggttggaaggtaattttgaatgttgacccagccaaggaagca
ggcttcaaacgtcttctagagtcaggaggagcaaaggtgcttcctgctcattctcctcct
cactttagagaagtgactcatctttttgctgatttcaataaactgaagccagaggatata
agaattgatgttggagaagcagctcatcaaggcgtgaactgccttaggccagaatacatt
gctgattaccttatacaggagttaccaccgccaatggaaaactatcatttgccagaagct
gctgcctatcttcagaatggaaaagaacacagaagtggatcatctcaaaagcggaaagct
cctgaagaaacacacacagtaaagcgattcagaatgcactga
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integrated database retrieval system
