Sceloporus undulatus (fence lizard): 121935668
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Entry
121935668 CDS
T07740
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund04510
Focal adhesion
sund04512
ECM-receptor interaction
sund04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121935668
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121935668
09142 Cell motility
04820 Cytoskeleton in muscle cells
121935668
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sund04147
]
121935668
00536 Glycosaminoglycan binding proteins [BR:
sund00536
]
121935668
Exosome [BR:
sund04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121935668
Glycosaminoglycan binding proteins [BR:
sund00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121935668
Hyaluronan
Extracellular matrix or blood plasma proteins
121935668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
DUF1194
DJ-1_PfpI
Motif
Other DBs
NCBI-GeneID:
121935668
NCBI-ProteinID:
XP_042333375
LinkDB
All DBs
Position
6:53766619..53827231
Genome browser
AA seq
2201 aa
AA seq
DB search
MKMLLTFILIITEIYISTAQKPALKSADLVFLVASSNASSRYVKTFISKTISSLSLGTNE
YRVALAQFSDQVYNEFHLDTYKGKNPMLNHIKSKLVFRSGPLQTGSALQKIQETFDWKPT
TGKDRSKILIVMTSQPSEDDVKEAAQMLQKAGVKIVALGMENASHDELLLIATKPFSFFF
PRIEELNLFSQNISEIIVDAISIDSNNPDPSNTTSVNKVNNGTALEACNADAVADVVFIV
DVGSSQTELEKIQIFLEKLVLSLDVKEKCVRTGLVTYSTKSQVASLLRMATDNTHVLQNI
RSLSSKPGEANTGSVIRFTRQKVFSEIAGSRKSQGVEQIAIVITHRSSEDDVSDAATALR
RAGVTIFAVGIEGANATQLAQIAAYPPEKYITNLKKFSHLPHKTSVFHKKIMNQIQQKLY
MDTQKADLLKRGCVDTEEADIYFLAGGSSSLDYFDFLDLKRFLKEVVKFFMIGPNRVRFG
VVQYAEVSELEFGPEEYGKTSDILKAIDNIRQIGGSLHTGKALTFIQPLLRKSQGQRSRS
VPCHVVVLTDQKSEDPVKEPAERLRNKMINMYAIGVRHANESQIYEIAESQDRAYFVNDF
ASLKHIKNEVVRDICAVEACKEKKSDILFLVDSSSKIGPENFVKMKNFMSELVNKSDIGL
DRVHFGAVQFSSRNREEFRLNQYTTKSDIISAIGRMSLMGQNALTGGALQFVLDYFRPTK
GSRPYVKKILILLTDAEAQDEVKTPAEALREEGIIVYSVGVFNANKTQLVEISGKPEMVF
YVEDFDFLKHLENEILFGICSPYDECRRIERLDIVFVIDGSGSIDPKEYDIMKDFMISLV
KKSDVSHDRVQFGAVKYSAEPETFFYLNDYTTKSAIIKAIQNDKSIGETTYTAKALRHSE
ALFSEKHGSRKHRSVPQVLIVITDGDSHDAAELDEVSKRLRENGIIIYAIGIERARPDEL
LTMAGSEDKYFYVNTFEGLKSLYPKISDKICSVSKPECGIPADLVFLIDGSNSISDSDFT
KMKNFLQDVVHPFDTGRNVQVGIAQYSDRYREEFSLSMFPHKSELETQIGRIRQMEGLQT
YIGAALERARHFFTPEGGSRINEKIQQILLVITDGRSHDKVIKASEDLRKKGVDIYAIGV
GRIDHLQLSQIAGFSDRKYTVDNFSELKVIKKRLVDDICEEENKTTCFMDVVVGIDVSSQ
KQGDRVFHGQYQLESYLPHIINALTSLTGVSCNVGSQSQTSVALKVENTDPPVASKFQID
SEKLLNSLVGTTIKNASHLNAEFLNSLWETFQIKSANRRKVLLIFSDGLDDSVEILEEKS
EELRKKGLDALITVVLEGASNFKDLQYIEFGKGFEYKTQLNIGMRNIDSQLFKYMTNIAE
RTCCCVFCKCIGEEGEAGNEGRHGMEGLRGFKGSPGHAGNEGEAGPRGLPGPDGDRGYMG
CRGNKGPKGQRGIIGRKGNSGEKGMDGINGEPGSHGLPGIKGEKGESGNQGSPGSKGVSG
VRGEKGFRGDHGSSGVDNNIVGPRGLEGERGIEGERGPRGLTGFPGSKGTRGRQGQRGPE
GPPGIKGSQGLNGFPGQQGFKGPQGERGIRGVKGRKGDQGRKGFPGQPGVAGPSGVPGNW
GTKGNKGEPGDPGLKGEKGLPGSYGMRGDDGSVGYGGTGNKGVKGQKGFPGAVGQKGNVG
NTGIPGEHGPKGIHGRMGPAGATGQKGTPGDRGPPGHRGIKGAKGVASFSPCELIAYIQE
HSSCYQGRRECPVYPTELVFALDVSQDTTPQLFQRMKKIVIEVVNNIKIRESNCPVGARV
AVVSYSSETHHLIRFSDFHSKSQLLRKLGALSYQRSANKGDLGGSMRYVARNIFKRVLPG
ANVRKVAVFFSNDLSVNPDSISTAVLEFSALDLVLAVITFNNITEVNHALTIDDSEHFQV
ITIPSKENYTPFLHRLQLCTLCYDKCKPNAACEHTRKEHPPWAYVDIAFILDSSWKMNPS
EFAKLRTFLSRVLDNFEVSSEPVISLVGDRVAIVSHALPSFQPQTQKNPVKKEFDLMTYS
ETQLMKKHIQESLQHLGGDPAVGHAIQWTLNHIFSSTPSLRKHKAIVVISAGETSSWDKE
LLKKVSLRAKCQGYALLVLSLGPTYNSTELEELASLPLEQHLIQLGRTHKPELDYALQFL
KAFLRFLRNGINSYPPAELRTKCNKINIQKTRYTPRSLSLM
NT seq
6606 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgttgttgacatttattctaataattactgagatatacatttctacggctcag
aaaccagctctcaagtctgcggatcttgtttttttggttgctagcagtaatgcatcatcc
cgttatgtcaaaacatttattagcaaaacaataagtagtttatctctaggcacaaatgag
tatcgtgtagcacttgcccaattcagtgatcaggtatacaatgaattccacctggatacc
tacaaagggaagaatccaatgttgaaccacatcaaaagtaaattggtgtttaggagtggc
cccttgcaaactggcagtgctctccagaagattcaggagacttttgactggaaaccaacc
acaggaaaagacaggtccaagattttgatagttatgacatctcaaccatctgaggatgat
gtgaaagaagctgcccagatgttgcaaaaggctggagtgaagattgttgcactggggatg
gagaatgcttcacatgatgaactacttctcatagccacaaaaccattttctttctttttc
cctagaatagaagaactcaatttattttctcagaacatttctgagatcattgttgatgct
atttccattgacagtaacaacccagatccatcaaatactacttctgtgaacaaagtgaat
aatggaacagcactggaagcttgcaatgctgacgcagttgctgatgtggtcttcatagtt
gatgtgggttcttcacaaacagaacttgagaagatccaaatatttttagaaaagcttgtg
ttgtctttggatgtgaaggaaaaatgtgtgaggactggtttagtgacttacagcaccaaa
tcccaggtggcatctttactgagaatggcaacagataatactcatgttctgcagaacata
cgaagcctttcttccaagccaggagaggccaacacgggttccgtcattcgtttcacaagg
caaaaagtcttctctgaaattgcaggaagcaggaagtctcaaggggtagaacaaatagcc
atcgtgatcacccataggtcttcagaagatgatgtgagtgatgcagcaactgctctgagg
agggctggtgtgactatatttgccgttggcattgaaggagccaatgccacccagttagcc
caaatagctgcttacccaccagaaaaatatattactaatctaaaaaagttttcccatttg
ccacataagacttcggtttttcataagaagatcatgaatcaaatacagcaaaagctctac
atggacactcaaaaagcagatcttctcaaaagaggatgtgtggatacagaagaagctgat
atttattttctcgctggtggttcatcaagtctggattattttgactttttggatctaaaa
cggtttttgaaagaagtggtcaaattttttatgattggaccaaacagggttcggtttgga
gttgtacagtatgctgaagtcagtgagctggaatttggacctgaggaatatggtaaaaca
agtgatatcttgaaagccattgataacatccgccaaataggtggaagccttcacacagga
aaagctctgacatttattcaacctttgttaaggaagtcacaaggtcagcgttccagaagt
gtgccctgccatgtggtggtgttgacagaccagaaatcagaggatcctgtgaaggaacct
gccgagaggttgaggaataagatgatcaacatgtatgccattggtgttagacatgccaat
gagtcacagatttatgagattgcagagtcccaagacagagcttattttgtgaatgatttt
gcctctttgaagcatataaagaatgaagtagtccgagatatctgtgctgtagaagcctgc
aaggaaaagaaaagtgacattctctttctggtggatagctctagtaagataggaccagag
aactttgtgaaaatgaagaactttatgagtgaactggtgaacaaatctgacattggatta
gatcgtgtccattttggtgctgtccagttcagcagcagaaacagagaagaatttcggctc
aaccagtacaccacgaaaagtgacattatcagtgctattgggagaatgtctcttatggga
cagaacgcacttactggaggagcgttgcaatttgtgttggattatttcaggcctacaaaa
ggctcccggccctatgtgaagaaaattctaattcttctcacagatgcggaagcacaggat
gaggtgaaaactccggcagaagctttgcgagaggaaggcatcattgtctattctgtgggg
gtatttaatgcaaataaaacacaactggtggaaataagcgggaagcctgagatggtgttt
tatgtggaggattttgactttctgaagcacttagaaaatgaaatcctctttggaatatgt
agcccatatgatgagtgcaggaggatagaacgcctagatattgtttttgtcattgatggt
tctggaagtatagaccctaaagaatatgatattatgaaagacttcatgatttccctggtg
aaaaaatctgatgttagccatgatcgagttcagtttggagctgtaaaatattctgctgag
ccagaaacgttcttctatcttaatgactacactacaaaatcagcaattataaaggctatt
cagaatgataaatctattggggaaacgacatacacagccaaggcattgagacactcagaa
gctcttttctccgagaagcatgggagccgcaaacacaggagtgtcccccaagttctgata
gtgataactgatggggactcccatgatgcagcagaacttgatgaagtatcaaagaggctc
agagaaaatggcattattatctatgccattgggatagaaagagccaggccagatgagctt
ctgaccatggcaggatcggaagataaatacttttatgtaaatacatttgaagggctaaaa
agcctgtatcccaaaatatctgataagatctgcagtgtttcaaaaccagaatgcgggatt
ccagctgatttggtatttcttattgatggatctaacagtataagtgacagtgactttacc
aagatgaagaattttttgcaagatgtggttcatccatttgacactggtcgcaatgtacaa
gttggtattgctcagtacagtgacaggtaccgggaagaattcagcctgagcatgttccca
cacaaatcagagctagaaactcaaattggacgaattagacagatggaaggacttcagact
tacattggtgcagctcttgagagagcgaggcacttcttcacaccagaaggtggcagcaga
ataaatgaaaaaattcaacagattttgcttgtgataactgatggacgatcacatgataaa
gtgataaaagcatccgaagatctgagaaagaaaggtgttgatatatatgccataggagta
gggagaattgaccatttgcagcttagtcagatagctggcttctcagacaggaaatacaca
gttgataatttcagcgaactgaaggtaattaaaaaaagactagttgatgatatttgtgag
gaagaaaataaaacaacatgcttcatggatgttgttgtgggaatagatgtctcctcacaa
aagcaaggtgaccgtgtatttcatggacagtaccagctggaatcctaccttcctcacatt
ataaatgccctcacgtccttaactggtgtgagctgtaatgtaggatcacagtcacaaact
agtgtggcactgaaagtggaaaacacagacccacctgtggcttcaaagttccaaatcgac
agtgagaagcttctgaacagtcttgtgggcaccaccatcaagaatgcatctcatctgaat
gcggagttcttgaattctctttgggaaacattccaaatcaaatctgcaaatcgaagaaag
gtgctgctcatattttcggatggcttggatgacagtgtagaaatcctggaagagaaatca
gaagaacttaggaaaaagggactggatgcattgataactgttgttctggaaggagcttca
aattttaaggaccttcagtacattgaatttggaaaaggatttgaatacaagacacagttg
aacattggcatgagaaatattgacagtcagttattcaagtatatgaccaacattgcagaa
cgaacctgctgctgtgtgttttgcaagtgcattggtgaagagggagaagctggcaatgaa
ggaagacatggaatggaaggtcttcgaggttttaaaggaagtccaggacatgcaggaaat
gaaggagaagctggtccaagagggttgccaggaccagatggagacagaggttacatggga
tgcagaggtaacaaaggtcctaaggggcagagaggaataattggtcgaaagggaaacagt
ggggagaaaggaatggatggcattaacggagagccaggctctcatgggcttccaggaatt
aaaggtgaaaagggtgaatcaggcaatcagggaagcccaggatcaaagggagtctctgga
gtacggggtgaaaagggttttcgaggagatcatggttcctctggggtagataacaacata
gtaggaccaagaggtttagaaggggaaagaggaatagagggtgagaggggaccaagaggc
cttacaggatttccaggctccaaaggaaccagaggacgccaaggtcaaagaggtcctgaa
ggccccccaggtataaaaggatcccaaggactcaatggttttcctggacagcaaggattt
aaaggtccacagggtgaaagaggaattcggggagtgaagggaaggaaaggagatcaagga
agaaaagggtttccaggccaaccaggagtagcaggtccatcaggtgttcctgggaactgg
ggaaccaaaggaaataagggagagcctggtgatcctgggttgaaaggagagaaaggacta
cctggatcttatgggatgaggggagatgatggttctgttggctatggtgggacaggaaat
aaaggtgtaaagggccaaaagggatttcctggagctgtaggacagaagggcaatgttggt
aacaccggaattccaggagaacatgggccaaaagggatccacggacgaatgggtcctgct
ggtgctactggtcagaaggggacaccaggggatcgtggccctcctggacacaggggtatt
aaaggcgccaagggtgttgcttccttttcaccttgtgagctcattgcctacattcaggag
cacagctcttgttaccaaggaagacgggaatgcccagtgtatcccactgagttggtattt
gccttggatgtctcccaagacaccacaccccagctatttcaacgtatgaaaaagattgtg
atagaggttgtgaacaacatcaaaatccgggaaagcaactgcccagttggagccagggtg
gctgtcgtatcctacagctctgaaacccaccatctcatccgcttctcagatttccacagc
aagagtcagttgcttcgaaaactcggtgctctttcttatcagagatcagcaaataaaggt
gaccttggtgggtctatgagatatgttgccagaaatatcttcaagagagttctcccaggt
gctaatgtgaggaaggttgctgtgtttttcagcaacgatctgtctgttaatccagattct
attagcacagcagttctggaattcagtgcgttggatcttgtcctggcagttatcactttt
aataacatcactgaggtcaatcatgctttgacgattgatgattccgaacactttcaagtc
attaccattcccagcaaggaaaactataccccatttttacatagactgcaactatgtact
ctatgctacgataaatgtaaaccaaatgctgcttgtgaacataccagaaaagaacaccca
ccgtgggcatatgtggatattgctttcattttggatagctcatggaaaatgaatcccagt
gaatttgcgaagctgaggaccttcttaagcagagtacttgacaattttgaggtgtcctct
gagcctgtcatttctttggtaggtgacagggtggctatagtgagccatgctctaccatct
ttccaaccccaaacacagaaaaatccagtaaagaaagagtttgacttaatgacttatagt
gagacacagttgatgaagaagcatatccaggaatcacttcagcatctgggtggagatcct
gctgttggccatgccatccagtggactcttaaccacattttctcatcaactcccagcctc
aggaaacacaaggctattgtagttatatctgctggggagacaagctcctgggataaagaa
ttattaaagaaagtgtctctcagagccaagtgccaaggctatgccctgctggtactttct
ttgggacctacctacaatagcactgaacttgaggagctggcaagtttacctttggagcag
cacttaattcagcttggcagaacccacaagcctgaattggattatgcacttcagttcctg
aaagcattcctacgcttccttcggaatggaatcaacagctacccaccagcagaactcaga
acaaaatgtaacaagatcaacattcagaaaaccagatacactccaaggagccttagtctc
atgtaa
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