Sceloporus undulatus (fence lizard): 121936215
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Entry
121936215 CDS
T07740
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03013
Nucleocytoplasmic transport
sund03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121936215 (UPF3B)
03015 mRNA surveillance pathway
121936215 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sund03019
]
121936215 (UPF3B)
Messenger RNA biogenesis [BR:
sund03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121936215 (UPF3B)
mRNA cycle factors
P-body specific factors
121936215 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
121936215
NCBI-ProteinID:
XP_042334116
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All DBs
Position
7:complement(37686843..37697086)
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AA seq
527 aa
AA seq
DB search
MPGKGVSRQRSRPSRRRRPGSRERRAANGRAGPSLSGTETGLLLTMKEDKENARPKEKRG
GTTPGPGGAAMAGADAKAGGEPDRLERPKDKKETLSKVVIRRLPPSLTKEQLEEHLQPLP
EHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRDRFDGYVFVDHKGLEYPAIVEFAP
FQKAAKKKSKKKDAKAGTIEDDPEYKKFLESYSADDEKLTSTPETLLEEIEARNKELIAK
KTTPLLNFLKNKQRLREEKREERRRRELERKRQREEERRKWKEEERRKRKEAEKTKKVER
CPEKERDRSKDEPKIKLLKKPEKDERDFEKKEKVKKLEKENLREDKAASTIGSMPAKRSD
GDVKEEKAKKSLPHRLEDDCGKDYREREREYDRDREYERIQRDKLRRQEEERRRQKERFE
KEKVFRRKEEDVKKERDSLREKGKRTELADYMGNTEKPEKATKEDKKEDMSKRDRIRNKD
RPAMQLYQPGARSRSRLSAYDESSAKSPDQGADKKQECETNNTKEVE
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgccgggaaagggagtctctaggcaacggtcgcggcctagtcgtcgtcgtcgtcctggt
tcccgcgagaggagggcggccaatgggcgagcggggccgagcctgagtgggacggagacg
ggcttgttgttgacgatgaaggaggacaaggagaacgccaggcccaaagagaagcgggga
gggacgacgccggggccgggaggagccgccatggccggggcggacgccaaagccgggggg
gaaccggacaggctcgagcggcccaaggataagaaggagacgctcagcaaggtagtgatt
cgccgccttcctcccagcttaaccaaggaacagcttgaagagcatctccagcctttgccc
gaacatgactattttgaattctttgcgaatgattccagtttgtaccctcacatgttttcc
agagcatacatcaactttaaaaaccaagaggacatagttctgttcagggatcgctttgat
ggttatgtttttgttgatcacaaaggtctagaatatcctgccatagtggaatttgcacca
tttcaaaaggctgccaaaaaaaagagtaagaaaaaagatgccaaagctgggaccattgaa
gatgatccagaatacaagaagtttttagaaagctacagtgcggatgatgaaaaattaaca
tccactcctgagaccttactagaggaaatagaggcaagaaacaaagaattaatagcgaaa
aagacaactcctctgctgaacttcttaaagaataaacagaggcttagagaagaaaaacgc
gaggagaggaggagaagagaactagagaggaaacgacaaagggaagaagaaaggaggaaa
tggaaagaagaagaaagaaggaaaagaaaggaagctgaaaaaacaaaaaaagtggaaagg
tgtccagagaaagagagggacagatctaaggatgaaccaaaaattaagctacttaagaag
ccagagaaagatgaaagagactttgaaaaaaaggaaaaggtcaagaaactggagaaagag
aatctgagggaggacaaggctgctagcacaatcggcagtatgccagccaagcgctctgat
ggggatgtgaaagaagaaaaggccaaaaaatctcttccacacagactggaagatgactgt
ggaaaagactacagggagagagagagagaatatgaccgagacagagaatatgagagaatc
cagcgagataaacttcgacgccaagaagaagagcgacggaggcagaaggagcgctttgag
aaagagaaagttttcaggagaaaagaagaagatgtgaagaaggagagagattcattacgg
gagaaaggaaaaagaactgaattggcagactatatgggcaatacagagaaaccagagaaa
gcaaccaaagaggataaaaaagaagacatgagcaagagggatcgcattagaaacaaggat
cggccagccatgcagctatatcagccaggagctcggagtcgaagtcgtttgtctgcatat
gacgaaagctctgccaagtcccctgaccaaggagcagataaaaagcaagagtgtgaaacc
aataacacaaaagaggtagagtga
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