Sceloporus undulatus (fence lizard): 121936332
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Entry
121936332 CDS
T07740
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund04382
Cornified envelope formation
sund04510
Focal adhesion
sund04512
ECM-receptor interaction
sund04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121936332 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121936332 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121936332 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121936332 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sund04147
]
121936332 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
sund00536
]
121936332 (COL4A6)
Exosome [BR:
sund04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121936332 (COL4A6)
Glycosaminoglycan binding proteins [BR:
sund00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121936332 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121936332
NCBI-ProteinID:
XP_042334435
LinkDB
All DBs
Position
7:complement(48009264..48127814)
Genome browser
AA seq
1713 aa
AA seq
DB search
MQGRVLLLLLALACLNADPVNGGGKKFYQGPCGGRDCSAGCRCFPEKGARGRPGPIGNQG
LMGAPGFTGPEGLRGQKGEKGSVGVSGPAGVKGDKGPMGVPGFQGIYGVPGHPGQAGSRG
LPGLDGCNGTIGSPGFPGTEGFPGIQGPPGRPGSKGPKGEPVFAQGVLKGMKGESGLPGL
DGAVGPKGFPGLLGPAGPVGLPGFPGPPGIPGPPGQLGNSGLVFQGEKGEKGDVGLPGPA
GPPPSTGILEFMEFPKGQRGAKGIPGPEGFPGPQGFPGPPGFFAFGEKGEKGVPGLPGPR
GDMGLKGFEGSPGGKGQPGDPGFPGRDGTPGGKGEFGDIGPPGPTVVVDAEGIVISGPPG
EPGTPGIPGPRGDEGPIGFPGLPGQAGYPAPFPGPPGQAGYPGASGAKGEQGVPGRSTTG
LPGPPGRDGVPGLPGPPGLPGPLRPGFRPDGILEGEAGETGVPGQRGPPGRFGPKGYKGE
GGDCACDGGLTGVGPRGEPGSPGQPGRPGEVGPKGPSGDLGIGEPGPRGPSGILGPPGLP
GFKGEKGEPVLATSRGIRGDPGDVGPRGPSGVPGIPGPDGSSGLPGLPGPPGDGGLGYPG
DKGSPGLPGAMGRRGESGLPGIGFPGSIGIRGPPGEPGIDGFPGQPGPPGPPGDCCCSEE
VGNGVLDAQGGITLPCVIPGAFGPPGLPGSPGFPGPKGSKGLPGIPGQPGFNGVKGQTGV
PGLIGLLGMPGFPGIRGDPGIQGPPGPEGTYGLPGNPGPPGFPGAKGPPGEVFGAESGAR
GEPGRPGLPGNKGFAGDPGLPGPKGLDGRSGLPGIKGSGGEPGLPGIPGLPGPPGPVGPL
GIKGKPGPVGVVGFPGSQGCQGLPGEKGKSGDPGPSGPAGMKGFPGLNGLPGRLGEQGFP
GSPGLLGSDGNPGFPGSKGEKGSAGVIGFPGMPGLPGITGVEGMKGFPGAPGRDGSVGFP
GLLGPKGDRGSPGPPGPVTVTPPELAVTLKGNKGESGSIGLGGFPGPRGDKGLPGPRGQP
GFPGIAGLPSREKGPAGDLGFPGPFGSPGLPGQKGASGILGFPGMPGESGALGISGSPGF
PGTMGLRGPKGDRGDSLGIPGGVGAKGERGNPGFPGARGYDGPKGDPGFPGSPGVKGQKG
VLGNIGQEGPPGVPGVGISRGNPGFPGTPGQRGSPGLPGLPGIQGLKGFPGFPGLNGLNG
LPGTKGSPGTPGPSEIGLPGPAGFPGAKGEQGVPGFQRGVPGFPGQKGPAGDMGRPGTLG
LPGLRGPPGISLPSKIPGRPGDAGRPGEDGIPGPQGPRGIQGPPGPASNQGDTGTPGFAG
LPGFPGPKGDMGISGLSGVPGASGFKGFRGEPGSMGMPGKDGPSGDPGFPGPKGETGRRG
FPGLQGAPGLTQKPEDIKVPPGFIGLPGIDGIPGLNGDPGFQGPVGQQGPKGVTGRPGQM
GINGLPGAPGMVGDPGSPGSPGPPGFEGQSGKTGPLGLPGMPGRSVGVGYTLVKHSQSEQ
IPPCPVGMNKLWEGYSLLYVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYASR
NDKSYWLSTTAPIPMMPVSSFQIAQYISRCSVCEAPSQAVAVHSQDITIPQCPEGWRSLW
IGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFSNKYSFWLTTVE
QTQQFIEPPISETLKAGQLLTRVGRCQVCMKNL
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atgcagggaagggtgctgcttcttcttctggccctcgcatgtctgaacgcggatcccgtg
aacgggggtgggaagaagttttaccagggaccttgcggaggtcgagactgcagcgcagga
tgcagatgctttccagagaaaggggctcggggtcgacccgggccaattggaaaccaagga
ctgatgggtgctccaggatttacaggaccagaaggcttgagaggacaaaaaggagagaaa
ggatcagtgggtgtttcaggaccagctggagtcaagggtgataaaggcccaatgggggtt
cctggatttcaaggcatctacggagttcctgggcaccctggccaagcagggtccagaggt
ctacctggtctggatggctgtaacggaacaattgggagccctggttttcctggaacagag
ggatttcctggcatccaagggccaccggggcgtcctggctccaaaggtccaaagggtgag
cctgtttttgcccagggagttttaaaaggaatgaagggagaaagtggacttccgggattg
gatggcgcggtgggtcctaaaggattcccaggtctactaggtcctgctggcccagttggg
ctacctggctttcccggaccaccaggtatacctggccctccaggccaattggggaacagt
ggcctagttttccagggagaaaaaggagaaaaaggagatgttggccttccaggtcctgct
ggacctccaccttccaccgggattttggaattcatggagttccctaagggacaacgaggg
gcaaagggcattccaggcccagaagggtttccaggtccgcaagggtttcctggtcctccg
ggcttttttgcttttggggagaaaggagaaaagggcgtacctggcttgccaggacccagg
ggagacatgggactgaagggatttgaagggagcccaggtggaaagggccaaccgggggac
ccaggatttccaggaagagatggaacaccaggaggaaagggcgagtttggtgatattggc
cccccaggtcctaccgtcgttgttgacgcagaaggcattgtgatctcaggtcctcctgga
gagcctgggaccccaggaatccctggtcctagaggtgacgaaggtcccattgggttccca
ggccttcctggccaagcagggtatcctgcaccatttccaggtcccccaggtcaggcagga
tacccaggagcttcaggagctaaaggtgaacaaggagttccaggtagatcaacaactgga
ttgcctggtccacctggcagagatggagttcctggtttgccaggaccaccaggactacct
gggccattgcgtcctggttttagaccagatggaatccttgaaggagaagccggagaaaca
ggagtccctgggcagagagggccaccagggaggttcggtccaaaagggtacaaaggtgaa
ggaggcgactgtgcttgcgatggagggctgaccggagttggccccaggggagagccaggt
tcacctggtcagcctggaaggccaggagaagttggcccaaaaggtccttcaggagatcta
ggcattggtgaaccaggcccacgtgggccatcgggtatcctcggtccccctggccttcca
ggtttcaaaggagagaaaggagaaccagtgttagcaaccagcagagggatccgaggagat
cctggggatgttggccccagaggtccttcaggtgtccctggaattcctggtccagatggt
tcctcaggtttgccaggtctccctggacctccaggtgatggtggccttggctacccaggg
gacaaaggctcaccaggattgcccggagcaatgggccggcgtggtgagagcggtcttcct
ggcattggtttcccaggctccattggaatccgtgggcctccgggtgagccaggaattgat
ggctttccgggacaacctggtcctccaggtcctccaggtgattgctgctgcagtgaggag
gttggtaatggagtcttagacgctcagggaggtataaccttgccctgcgtaattcctgga
gcattcggtccacctgggctcccaggttctccgggatttccaggacccaagggtagcaaa
ggacttccaggcattccagggcagccgggattcaatggtgtaaaaggacagacaggtgta
ccagggttgatcggcctcttaggcatgccaggttttccagggattcgtggtgacccaggg
atacaaggacctcctgggccagaggggacctatggtttgcctggaaatccaggtcctcct
ggttttcctggtgcaaagggtcctcctggtgaagtgtttggggctgaaagtggagctcga
ggtgaacccgggagacccggattgccaggaaataaagggtttgctggggatcctggactt
cccggaccaaaaggtttagatgggaggtcaggcctgccaggcataaaagggagcggtggc
gaaccaggtcttccaggtattcctggacttccaggacctccagggcctgttggcccactt
ggcatcaaaggaaaaccaggtccagtgggagtcgtcggcttcccaggatcccaaggctgt
caaggacttcccggagaaaaaggcaaaagtggggatcccggtccatcaggccctgctggt
atgaagggtttcccaggtcttaatggtcttccaggacgtcttggagagcaaggatttccc
ggatcgcctggccttttgggctcagatggaaatccaggtttccctggatctaaaggagaa
aagggttctgcgggtgtcattggcttccctggcatgccaggcctacctggaatcactggg
gttgaggggatgaaaggatttcctggagcaccaggaagagatggaagcgttgggtttcct
ggactccttggtccgaaaggggacagaggtagtcctggcccccctggtcctgtcaccgtc
acacccccagaactggccgtcaccctcaaaggaaacaaaggagagtccggctctattggg
cttggaggatttccaggacctagaggagacaagggtcttcctgggccgcgggggcagcct
ggctttccaggaatagccggattgccgagcagagagaaaggaccagctggagacttgggt
ttcccaggaccatttggctctcctggcttgccagggcagaagggcgcttctggcatttta
gggttcccagggatgcctggagaaagtggtgctttgggtatatcaggctcaccaggattc
ccagggacaatgggattacgaggtccaaagggtgaccgaggagactctcttggaatccca
ggcggtgtaggagctaaaggagaacgcggaaaccctggatttccaggtgcgagaggctat
gatggaccaaagggtgacccaggattccccggaagcccaggggtcaaagggcagaaaggt
gtgctcggtaacatcggccaagaaggaccgccaggtgtccctggagttggtatctcaagg
ggcaacccaggatttccagggaccccaggacagcgtggttccccaggacttccaggactt
cccggcatccaaggactaaaagggtttccaggctttccaggtctgaatggtctaaatggc
ttaccgggcaccaaaggttctcctgggacaccaggtccaagtgaaattggacttccaggt
cctgcggggtttccaggtgccaaaggagagcagggagtcccaggttttcagcgtggagtc
ccggggtttcctgggcagaaaggacctgcaggagatatgggtcgtcctggaaccctgggt
ctgcctggtttgcgtggccctcctggcatttcccttccatctaagattcctgggagacct
ggagatgctggacgtcctggagaggatggtataccaggcccacaaggaccccgtggtatt
caaggacccccgggtccagcttctaaccaaggggacacagggaccccaggattcgctggt
cttcctggtttcccaggccccaaaggagatatggggatttctggactcagtggtgttcca
ggagcatccggattcaaaggcttcagaggtgaaccaggctccatgggaatgccaggcaaa
gatggcccttcaggcgatccaggtttcccaggtccaaaaggtgaaaccgggcgtcgaggt
tttcctggtctccagggagctccaggcttgacacagaaacccgaagacatcaaggttcct
cctgggttcattggacttccagggattgatggcatcccaggtttaaatggagatccggga
ttccagggaccagtcggccagcaaggccccaaaggggtgacaggtagacctggccagatg
gggatcaatggtctgcctggagcacctggtatggtgggcgatccaggctctccaggtagc
cctggaccaccaggatttgaaggtcagtctgggaagacggggccgctgggtttgcctggc
atgccggggcgcagcgttggcgtcggctacaccttggtgaagcacagccagtcagagcag
atcccaccctgccctgtagggatgaacaagctctgggaaggctacagcttgttgtatgtg
gagggccaggagaaggcacacaaccaagacctcggttttgctggttcctgtctgcctcgc
ttcagcacgatgccctttatttattgcaacatcaatgaggtgtgctactatgccagccgc
aacgataagtcttactggctctccaccactgcgcccatccccatgatgcccgtcagcagc
ttccagatcgctcagtacatcagtcgctgctctgtgtgtgaagctccttcccaagcagtg
gctgtccacagtcaggacatcaccatcccacagtgtccagagggctggcgaagcctctgg
attggatactccttccttatgcacactgcggccggagccgaagggggcggacaatccctt
gtctccccagggtcctgcctggaggatttccgtgccacccctttcatcgagtgcaatggt
gcccgggggacctgccactacttttccaacaagtacagcttctggctgacaacggtggag
cagacccagcaatttattgaacctcccatctccgagacgttgaaagcagggcagctcctg
acgcgggtaggccggtgccaagtctgcatgaagaatttgtag
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