Sceloporus undulatus (fence lizard): 121936688
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Entry
121936688 CDS
T07740
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund04140
Autophagy - animal
sund04148
Efferocytosis
sund05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121936688 (VPS39)
04148 Efferocytosis
121936688 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121936688 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sund04131
]
121936688 (VPS39)
Membrane trafficking [BR:
sund04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
121936688 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
SAM_CEP-1_C
Motif
Other DBs
NCBI-GeneID:
121936688
NCBI-ProteinID:
XP_042335096
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All DBs
Position
1:318207486..318246018
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AA seq
884 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKETGEVTASENGCCNRF
EVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVPKAKGATLFTC
DLKHSDTGEEVLRMCVAVRKKLQLYYWKDRDFYELQGDFSVPDVPKSMAWCEDSICVGFK
RDYYLIRVDGRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALN
WTDIPIAMDFQPPYIVAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGANIVYVASNHF
VWRLIPVSIATQIQQLLQDKQFELALQLADMKDDSDSEKKQQIHHIKNLYAFNLFCQKRF
DESMQVFAKLGTDPTHVMGLYPELLPSDYKKQLQYPNPVPVLSPAELEKAHLALIDYLTQ
KRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRL
ENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQY
LQHLGTENLNLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRKRVLNFLIENFKSLAIP
YLEHIIHIWEEAGSEFHNCLIQLYCEKVQGLMKEYLSSFPLDKTPMPAGEEEGELGEYRQ
KLLFFLETSTCYNADQLISDFPFDGLLEERALLLGRMGNHEQALFIYVHILKDTKMAENY
CHKHYDRSKDGNKDVYLSLLRMYLSPPSVHCLGPIKMELLEPQANLQAALQVLELHHSKL
DTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQV
KCIITEEKLCSVCKKKIGNSAFARYPNAIVVHYFCSKEVGAADT
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccggtgcccatcttggagaagctgcccctccagatcgactgc
ctggccgcctgggaggaatggctcctcgttgggaccaaacaaggacaccttctactttac
cgaattcgaaaagaaactggagaggttacggcatcagaaaatggatgttgcaatcggttt
gaagtgacattggagaaatcaaacaagaacttctccaagaagattcagcagatccatgtt
gtatcccagttcaaaattttggtcagtttattagaaaacaacatttatgttcatgacctg
ttgacatttcaacaaatcacaacagttcccaaggcaaaaggtgcaactctcttcacctgt
gatctaaagcactctgatacaggggaagaggtgctgaggatgtgtgtggcagtaagaaag
aagctacagttgtattactggaaggacagagacttctacgagctgcagggggacttcagt
gtaccggatgtacccaaatctatggcatggtgtgaagattcaatttgtgtcggtttcaag
agggactattacctgataagagtagatgggagaggatccatcaaagaactcttccccact
ggaaagcagcttgaaccactggtagctcctttggcagatggaaaagttgctgtaggccaa
gatgatctaactgttgtgctaaatgaagaagggatctgtacacagaaatgtgccttgaac
tggactgacatcccaatagccatggattttcagcctccatatattgtagcagtgctgcca
agatacgtagagattcgtacatttgagccccgtctcctagtgcagagcattgagctacag
aggccacgcttcattacttcaggaggtgcaaatattgtgtatgtggccagcaatcatttt
gtttggcgtctcattccggtttctattgcaacccagatccaacagcttctccaggataaa
caatttgaattggctctgcagttggcagatatgaaagatgattctgacagtgaaaagaaa
caacagatccatcatattaagaatctctatgccttcaatcttttctgccaaaaacggttt
gatgaatccatgcaggtttttgccaagcttgggacagatcctactcatgtgatgggtctc
tatcctgaactgttgcccagtgattacaagaaacagctccagtatcccaatccagtacca
gttctctctcctgcagagctggagaaagcacacctggcacttatagattatctaacacaa
aaaagaagtcagttagtgaagaaactgaatgactcagaccatcagtccagtacctctcct
ctcatggaaggaactcccaccatcaaatccaagaagaagttgctgcagatcatagatact
accctcttgaaatgctacctccataccaatgtagcactagtggcaccactgttacgattg
gaaaacaatcactgccacattgaagaaagtgagcatgtgttgaagaaagctcacaaatac
agtgagctgatcatactatatgagaagaaaggtctacatgaaaaagcattgcaggtgcta
gtggatcagtcaaaaaaagctaactcgcctttgaagggccacgagaggactgtgcaatat
ttacaacatttgggcaccgaaaacctgaatttaatattttcatattctgtgtgggtgctc
agagactttcctgaggatggattaaagatctttacagaagatcttcctgaggtggaatcc
ctcccacggaaaagggttctcaatttcttaatagagaactttaaaagcttggcaattccc
tatttggaacatataatccacatctgggaggaggctggttcagagttccacaactgcctg
attcagctctactgtgagaaagtccaaggtttaatgaaggaatatctcagctcttttcct
ctagataaaacaccgatgccagctggagaggaagagggagaactgggagagtaccggcaa
aaacttcttttctttcttgagacatccacttgctataatgctgaccagctcatcagtgac
tttccctttgatggtctcttagaagaacgtgctctgctgttgggacggatggggaatcat
gaacaagcactttttatatatgttcacatcttgaaggacaccaaaatggctgaaaattat
tgtcacaaacactatgacagaagcaaagatggcaacaaagatgtatatttgtctctgctc
cggatgtatctctcaccacctagtgttcattgcttgggaccaatcaagatggaactacta
gagcctcaagccaatctccaggctgccttgcaagttttggaacttcaccatagcaagttg
gacactaccaaagcaataaaccttcttccagcaaatactcaaataagtgaaatcagaatt
ttcttagaaaaagtccttgaagaaaatgcccagaagaagcgattcaatcaagtacttaaa
aaccttctccatgctgaattcttgagagtacaagaggaacgaattttacaccagcaagtg
aaatgtataatcacagaggaaaagctttgcagtgtatgtaaaaagaagattggaaatagt
gcctttgcccgctatcccaatgcaatagttgtgcattatttttgttccaaagaagttggc
gcagcagacacctga
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