Sceloporus undulatus (fence lizard): 121936775
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Entry
121936775 CDS
T07740
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund04382
Cornified envelope formation
sund04510
Focal adhesion
sund04512
ECM-receptor interaction
sund04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121936775 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121936775 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121936775 (COL4A5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121936775 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sund04147
]
121936775 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
sund00536
]
121936775 (COL4A5)
Exosome [BR:
sund04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121936775 (COL4A5)
Glycosaminoglycan binding proteins [BR:
sund00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121936775 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121936775
NCBI-ProteinID:
XP_042335267
LinkDB
All DBs
Position
7:48129194..48218239
Genome browser
AA seq
1699 aa
AA seq
DB search
MQRMKGGPQGLPPLWLLLLLLLLRGAQDVGAAACHGCSSGSKCDCSGQKGEKGDRGFPGL
EGQPGLPGFPGPEGPPGPRGEKGDDGLPGPGGPKGIRGPPGLPGFPGTPGLPGLPGQDGP
PGPPGIPGCNGTKGERGFPGNVGFPGLQGPPGPPGLPGMKGEPGEIISSMLPGQKGDPGF
PGVPGIPGPPGPIGALGPIGPPGPPGLTGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQ
GPPGPPGQIGEQKRPNDVEFQKGDQGVPGDRGPPGPPGLPGPPGPPGGGKGEKGEQGEPG
KRGKPGKDGEPGQPGLFGLSGDRGVPGFPGRDGEKGQKGDAGPPGPPGRVIPRPDTGATV
GPKGSKGLPGFPGEKGERGYPGLEGPPGFPGPPGIPSIGPSGTPGLPGERGQKGDQGLPG
ISIPGPPGIDGRPGLPGPPGPPGPPGTAVSPVDGLCERGPPGLPGLPGEQGFMGETGQKG
DKGDTCFNCIGTGISGPPGEKGLPGLPGSPGSPGLPGPKGDKGFPGLVGLVGPQGLPGPQ
GPPGRPGAKGDPGDVRTFPGLKGDKGDPGFPGPAGLPGLDGTRGQDGSPGLPGPKGEPGG
INFKGSRGPSGDPGIPGLPGDRGPPGPPGFGPQGPPGEKGIQGVSGRPGSPGVPGPKGDP
GQTITESGSPGIPGPPGRDGEIGLPGDPGPPGPAGLPGFPGQKGDPGLPGIGLPGPPGPK
GFPGLPGLPGAPGTPGIAGLDGPPGPPGIAGQKGDRGFGVPGPAGPPGPPGFKGAQGSKG
EPGFPGTPGTPGRAGLNGTPGPKGDPGPRGQPGLVGPPGFPGIGGQGPPGAPGPPGPVGP
PGPPGLQGIAGEKGDPGPPGFDVPGPPGDRGSPGFPGSPGSPGPPGPTGPPGRDGSPGFP
GGKGEMGVMGAPGPPGSPGTPGRSGLPGPKGNDGLPGQLGRPGSPGQKGSKGETGLPGLP
GKVDLSQLGSKGEKGEPGTAGIPGLTGQKGYQGISGDPGPPGLVGQPGTPGLPGPKGDRG
LPGPPGPTGPPGQKGSGGEMGLPGSPGAKGSQGIGGRPGQPGSPGFPGLKGDKGDPGLSD
VGIPGPPGPKGDAGLPGYSGSPGIKGSSGNPGLPGLPGNPGAKGEPGLPGFPGTPGMPGP
KGIDGPPGNPGVPGTPGPPGDLGRPGPPGPSGEKGQPGQDGIPGPAGQKGEPGQPGFGLP
GNPGLPGLSGQKGDPGLPGPLGPPGPPGLKGESGAQGFPGLQGPPGSPGLPGPPSEGPKG
SPGPPGIPGRPGATGPPGLPGPEGVRGPPGTGGVKGEKGNPGPSGQPGLPGSKGDQGIPG
RPGDPGRPGLNGMKGDPGVPGVPGFPGMKGPLGPPGPAGFAGDPGPPGSPGPPGIPGPAG
QTIVVKGDPGPPGPPGQPGMKGLPGLPGPPGSPGPIGLPGDAGQDGLPGFDGPGGRKGER
GLPGQPGFRGSQGPPGPDGLQGPPGPPGMASVAHGFLITRHSQTTDTPFCPQGTTRIYDG
FSLLYVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMP
MSMEPLTGKSIQPFISRCTVCEAPAMVIAVHSQTIQIPSCPLGWSSLWIGYSFMMHTSAG
AEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEVAEMFSKPQSETL
KAGDLRTRISRCQVCMKRT
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaggatgaaggggggccctcaggggctcccccctctttggcttctccttctcctg
cttcttcttcggggggctcaggacgtcggagccgcggcttgccatggatgttcttcagga
tccaaatgcgactgtagtggacaaaaaggagaaaagggcgacagaggattcccggggtta
gaagggcaaccaggtttacccggatttccaggaccagaaggaccacctgggccaagaggc
gaaaaaggagatgatggacttccaggaccaggtggacccaaaggaattagaggacctcca
ggtctacctggctttccaggaacaccaggacttcctggtctgccaggtcaagatgggcct
ccagggcctccaggaatcccaggatgcaacggaacaaagggtgaacgtggctttcctggc
aatgtaggttttcccggtctgcaagggccccccggtcctcctggcttaccaggaatgaag
ggagagccaggtgaaattatatcgtctatgcttccaggacagaaaggcgacccaggattc
ccaggcgttccagggataccaggcccgccaggtcccattggcgcactaggtcccatcggt
cctcctgggccaccaggtttgacgggtcctcctggcccaccaggattaccaggccctaag
ggcaacatgggcttgaacttccaagggcccaaaggagaaaagggtgaacagggactccaa
ggacctccagggccaccagggcagattggcgaacagaagagaccaaacgatgtagaattt
cagaagggagatcagggtgttccaggtgaccgtgggcccccaggacctcctgggttacca
ggtcctcctggccctcctggtggtggaaaaggtgaaaaaggtgagcaaggagaaccaggc
aaaagaggaaaacctggcaaggatggagaacctgggcagcctggcttgtttggcttgtct
ggtgatcgtggcgtccctggctttccgggaagagatggggaaaagggtcagaaaggcgac
gctggtccacctggtcctcctggtcgtgtaattcctaggccagatactggtgcaacggtg
ggacccaaaggtagcaaaggtttgccaggatttcctggagagaagggcgagcgcggctat
cctggtctagaaggtcctcccggctttccaggtcccccaggaattccaagcataggtcct
tctggcacacctggtctccctggagaaagaggacagaagggggatcaaggtctccctggg
atttccatccctggcccacctggaattgatggacgaccaggacttcccggtcccccgggt
cccccaggaccaccaggaacagcagtttcaccagtggacgggttatgtgaacgagggcct
cccggcctcccaggcctcccaggtgaacaaggatttatgggagagacaggccagaaagga
gataaaggggacacatgtttcaactgtataggaactggcatttctggccctcctggggag
aagggactgcctggattacctggaagcccaggttcacctggtttacctggaccaaaaggt
gataaaggatttcctggcctagttggccttgttgggccccaaggtcttcctggccctcaa
ggtcctcccggacgacccggtgccaaaggcgatccaggcgatgtccgtactttccctggg
ttgaaaggcgataaaggagaccctggcttcccaggccctgcagggctgcctggtttagat
gggacccgtggacaagatggaagcccgggacttcctggaccaaaaggagagccaggaggc
atcaatttcaaaggaagcaggggcccctctggtgatccagggatccctggacttccgggg
gaccgagggccaccggggcctcctggatttggtccacagggtcctccaggagagaaaggc
attcagggtgtttcaggtcgcccaggatctcctggagtcccaggacccaaaggagaccct
ggtcaaacgatcacagaatcggggtctccaggaatacctggtcctccaggcagggatggc
gaaattggtctcccaggtgacccaggcccaccagggccagctggattgccagggttccct
gggcagaaaggtgacccaggactacctggcatcggtcttccaggcccaccaggaccgaaa
ggtttccctggattgccaggtctccccggagcaccaggaacccctggaatagcaggtcta
gatggacctcccggaccacctggaatagcaggacagaagggggatcgtggatttggtgtt
ccaggaccagctgggccacctgggccaccaggttttaaaggggcacagggttcgaaaggt
gaacctggctttccaggaactcctggtactccaggacgcgcaggtttaaatggaactcca
ggacctaaaggtgaccctgggccacgcggccagcctgggttagtaggacctccagggttt
ccaggaattggtggtcaaggtcccccaggcgcaccggggcctccaggacctgtcggcccc
ccaggcccaccaggactgcaaggtatagctggtgaaaaaggagaccctggcccgccagga
ttcgacgttcccggtcctccaggtgaccgaggcagtccaggtttcccaggatcccctggt
tccccaggaccaccgggtccaactgggccacctggccgagacggaagtccaggattccca
ggtggcaaaggtgagatgggagtgatgggcgcacctggaccaccaggttcacctggaacc
cctggcagaagtggccttcctggccccaaaggcaatgatggtttacctggccagttggga
cgtccaggatctccgggacaaaaaggcagcaagggcgagacaggtctgcctggacttcca
ggaaaagtggatctaagccagttgggctcaaaaggagaaaaaggagagccaggaactgca
ggtattcctggtctaactgggcagaagggttaccaaggcatctcaggtgacccagggcct
cctggactagttgggcagccaggcacacctggacttccaggtcccaaaggcgatcgagga
ttacctggcccccctggaccaactggaccccctggacagaaaggttctggtggtgaaatg
ggtcttccaggttccccgggtgcgaaaggttcgcaaggcataggagggcgccctggacag
cctggttctcctgggtttcctgggctgaaaggagacaagggtgatcctggactttcggac
gtcggtatcccaggtccccctggccctaagggcgatgcaggattgcctggctactcaggg
agtcctggtatcaaagggtcttctggcaatcctggcttgcctggtttgcccggtaatcca
ggtgcaaaaggtgaacctggcctccccgggttcccagggacaccaggtatgccaggacca
aaaggtatcgatggacccccaggtaatccaggcgtaccaggaacacctggacctccaggt
gaccttggtcgccctggtcctccaggtccttcaggagaaaaaggacaacctgggcaagac
ggcattcctggaccggcaggacagaagggagaaccaggtcaaccagggtttggtcttccc
ggaaatccaggactcccaggactatcaggtcaaaagggtgacccaggtttaccggggccc
cttggtccaccaggcccccctggtctgaagggagagtccggggcccagggttttcctggc
ctccaaggcccaccaggctccccaggactcccagggccaccatcagaaggaccgaagggt
agccctggtccaccaggcataccaggaaggccaggtgccacaggtcctccaggtctacct
ggtccagaaggtgtccgtggaccccccggaactggaggagtcaaaggtgaaaaggggaac
ccaggtccatcaggtcaacctggactgcctggctcaaaaggagatcaaggaatacctgga
cgcccgggtgatccagggcgtcccggtctgaatggaatgaaaggtgatcccggtgtccca
ggagtcccaggatttccagggatgaagggcccccttggacccccaggaccagccggcttt
gcaggagaccccggacctccaggttccccaggtcctccagggatacctggcccagctgga
caaaccattgtggtaaaaggtgaccctggtccaccaggcccaccagggcaacctggaatg
aaaggcctacctggactaccaggccctccaggttcgccaggtccgattggtcttcctggt
gatgctggacaagatgggctgcctggatttgatggtccaggaggacgtaaaggggagcga
ggacttccaggtcaaccaggttttcggggttcgcaaggccctcctggtccggatggtttg
cagggaccccccggtcctcctggaatggcgtcagtcgctcatgggttcctgatcactcgc
cacagccaaacgacagatacaccattctgcccacaaggaaccactcggatatatgatggc
ttttctcttttgtatgtccaggggaacgaaagagcccacgggcaggacttgggcaccgct
ggcagctgcctccgccgtttcagcaccatgcctttcatgttctgcaacatcaacaatgtc
tgtaattttgcatctagaaatgactattcctattggctctccactcccgagccgatgccc
atgagcatggagccattaactggaaagagcatccaaccttttattagccggtgcacggtc
tgtgaagctccagccatggttatagcagtccacagccagaccatccaaatcccatcatgt
ccactaggctggagctccttatggatcggctattctttcatgatgcacaccagtgccggt
gcagaaggatctgggcaggcattggcttctcctggttcctgccttgaagaattccgctca
gctcctttcattgagtgccatggccgagggacctgcaactattatgccaactcctacagc
ttctggctggcgacggtggaggtggcagaaatgtttagtaaacctcagtctgagaccctc
aaggccggagacctgaggacgcgtattagtcgatgccaagtatgtatgaagaggacgtaa
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