Sceloporus undulatus (fence lizard): 121936775
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Entry
121936775 CDS
T07740
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund04510
Focal adhesion
sund04512
ECM-receptor interaction
sund04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121936775 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121936775 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121936775 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sund04147
]
121936775 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
sund00536
]
121936775 (COL4A5)
Exosome [BR:
sund04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121936775 (COL4A5)
Glycosaminoglycan binding proteins [BR:
sund00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121936775 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121936775
NCBI-ProteinID:
XP_042335267
LinkDB
All DBs
Position
7:48129194..48218239
Genome browser
AA seq
1699 aa
AA seq
DB search
MQRMKGGPQGLPPLWLLLLLLLLRGAQDVGAAACHGCSSGSKCDCSGQKGEKGDRGFPGL
EGQPGLPGFPGPEGPPGPRGEKGDDGLPGPGGPKGIRGPPGLPGFPGTPGLPGLPGQDGP
PGPPGIPGCNGTKGERGFPGNVGFPGLQGPPGPPGLPGMKGEPGEIISSMLPGQKGDPGF
PGVPGIPGPPGPIGALGPIGPPGPPGLTGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQ
GPPGPPGQIGEQKRPNDVEFQKGDQGVPGDRGPPGPPGLPGPPGPPGGGKGEKGEQGEPG
KRGKPGKDGEPGQPGLFGLSGDRGVPGFPGRDGEKGQKGDAGPPGPPGRVIPRPDTGATV
GPKGSKGLPGFPGEKGERGYPGLEGPPGFPGPPGIPSIGPSGTPGLPGERGQKGDQGLPG
ISIPGPPGIDGRPGLPGPPGPPGPPGTAVSPVDGLCERGPPGLPGLPGEQGFMGETGQKG
DKGDTCFNCIGTGISGPPGEKGLPGLPGSPGSPGLPGPKGDKGFPGLVGLVGPQGLPGPQ
GPPGRPGAKGDPGDVRTFPGLKGDKGDPGFPGPAGLPGLDGTRGQDGSPGLPGPKGEPGG
INFKGSRGPSGDPGIPGLPGDRGPPGPPGFGPQGPPGEKGIQGVSGRPGSPGVPGPKGDP
GQTITESGSPGIPGPPGRDGEIGLPGDPGPPGPAGLPGFPGQKGDPGLPGIGLPGPPGPK
GFPGLPGLPGAPGTPGIAGLDGPPGPPGIAGQKGDRGFGVPGPAGPPGPPGFKGAQGSKG
EPGFPGTPGTPGRAGLNGTPGPKGDPGPRGQPGLVGPPGFPGIGGQGPPGAPGPPGPVGP
PGPPGLQGIAGEKGDPGPPGFDVPGPPGDRGSPGFPGSPGSPGPPGPTGPPGRDGSPGFP
GGKGEMGVMGAPGPPGSPGTPGRSGLPGPKGNDGLPGQLGRPGSPGQKGSKGETGLPGLP
GKVDLSQLGSKGEKGEPGTAGIPGLTGQKGYQGISGDPGPPGLVGQPGTPGLPGPKGDRG
LPGPPGPTGPPGQKGSGGEMGLPGSPGAKGSQGIGGRPGQPGSPGFPGLKGDKGDPGLSD
VGIPGPPGPKGDAGLPGYSGSPGIKGSSGNPGLPGLPGNPGAKGEPGLPGFPGTPGMPGP
KGIDGPPGNPGVPGTPGPPGDLGRPGPPGPSGEKGQPGQDGIPGPAGQKGEPGQPGFGLP
GNPGLPGLSGQKGDPGLPGPLGPPGPPGLKGESGAQGFPGLQGPPGSPGLPGPPSEGPKG
SPGPPGIPGRPGATGPPGLPGPEGVRGPPGTGGVKGEKGNPGPSGQPGLPGSKGDQGIPG
RPGDPGRPGLNGMKGDPGVPGVPGFPGMKGPLGPPGPAGFAGDPGPPGSPGPPGIPGPAG
QTIVVKGDPGPPGPPGQPGMKGLPGLPGPPGSPGPIGLPGDAGQDGLPGFDGPGGRKGER
GLPGQPGFRGSQGPPGPDGLQGPPGPPGMASVAHGFLITRHSQTTDTPFCPQGTTRIYDG
FSLLYVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMP
MSMEPLTGKSIQPFISRCTVCEAPAMVIAVHSQTIQIPSCPLGWSSLWIGYSFMMHTSAG
AEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEVAEMFSKPQSETL
KAGDLRTRISRCQVCMKRT
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaggatgaaggggggccctcaggggctcccccctctttggcttctccttctcctg
cttcttcttcggggggctcaggacgtcggagccgcggcttgccatggatgttcttcagga
tccaaatgcgactgtagtggacaaaaaggagaaaagggcgacagaggattcccggggtta
gaagggcaaccaggtttacccggatttccaggaccagaaggaccacctgggccaagaggc
gaaaaaggagatgatggacttccaggaccaggtggacccaaaggaattagaggacctcca
ggtctacctggctttccaggaacaccaggacttcctggtctgccaggtcaagatgggcct
ccagggcctccaggaatcccaggatgcaacggaacaaagggtgaacgtggctttcctggc
aatgtaggttttcccggtctgcaagggccccccggtcctcctggcttaccaggaatgaag
ggagagccaggtgaaattatatcgtctatgcttccaggacagaaaggcgacccaggattc
ccaggcgttccagggataccaggcccgccaggtcccattggcgcactaggtcccatcggt
cctcctgggccaccaggtttgacgggtcctcctggcccaccaggattaccaggccctaag
ggcaacatgggcttgaacttccaagggcccaaaggagaaaagggtgaacagggactccaa
ggacctccagggccaccagggcagattggcgaacagaagagaccaaacgatgtagaattt
cagaagggagatcagggtgttccaggtgaccgtgggcccccaggacctcctgggttacca
ggtcctcctggccctcctggtggtggaaaaggtgaaaaaggtgagcaaggagaaccaggc
aaaagaggaaaacctggcaaggatggagaacctgggcagcctggcttgtttggcttgtct
ggtgatcgtggcgtccctggctttccgggaagagatggggaaaagggtcagaaaggcgac
gctggtccacctggtcctcctggtcgtgtaattcctaggccagatactggtgcaacggtg
ggacccaaaggtagcaaaggtttgccaggatttcctggagagaagggcgagcgcggctat
cctggtctagaaggtcctcccggctttccaggtcccccaggaattccaagcataggtcct
tctggcacacctggtctccctggagaaagaggacagaagggggatcaaggtctccctggg
atttccatccctggcccacctggaattgatggacgaccaggacttcccggtcccccgggt
cccccaggaccaccaggaacagcagtttcaccagtggacgggttatgtgaacgagggcct
cccggcctcccaggcctcccaggtgaacaaggatttatgggagagacaggccagaaagga
gataaaggggacacatgtttcaactgtataggaactggcatttctggccctcctggggag
aagggactgcctggattacctggaagcccaggttcacctggtttacctggaccaaaaggt
gataaaggatttcctggcctagttggccttgttgggccccaaggtcttcctggccctcaa
ggtcctcccggacgacccggtgccaaaggcgatccaggcgatgtccgtactttccctggg
ttgaaaggcgataaaggagaccctggcttcccaggccctgcagggctgcctggtttagat
gggacccgtggacaagatggaagcccgggacttcctggaccaaaaggagagccaggaggc
atcaatttcaaaggaagcaggggcccctctggtgatccagggatccctggacttccgggg
gaccgagggccaccggggcctcctggatttggtccacagggtcctccaggagagaaaggc
attcagggtgtttcaggtcgcccaggatctcctggagtcccaggacccaaaggagaccct
ggtcaaacgatcacagaatcggggtctccaggaatacctggtcctccaggcagggatggc
gaaattggtctcccaggtgacccaggcccaccagggccagctggattgccagggttccct
gggcagaaaggtgacccaggactacctggcatcggtcttccaggcccaccaggaccgaaa
ggtttccctggattgccaggtctccccggagcaccaggaacccctggaatagcaggtcta
gatggacctcccggaccacctggaatagcaggacagaagggggatcgtggatttggtgtt
ccaggaccagctgggccacctgggccaccaggttttaaaggggcacagggttcgaaaggt
gaacctggctttccaggaactcctggtactccaggacgcgcaggtttaaatggaactcca
ggacctaaaggtgaccctgggccacgcggccagcctgggttagtaggacctccagggttt
ccaggaattggtggtcaaggtcccccaggcgcaccggggcctccaggacctgtcggcccc
ccaggcccaccaggactgcaaggtatagctggtgaaaaaggagaccctggcccgccagga
ttcgacgttcccggtcctccaggtgaccgaggcagtccaggtttcccaggatcccctggt
tccccaggaccaccgggtccaactgggccacctggccgagacggaagtccaggattccca
ggtggcaaaggtgagatgggagtgatgggcgcacctggaccaccaggttcacctggaacc
cctggcagaagtggccttcctggccccaaaggcaatgatggtttacctggccagttggga
cgtccaggatctccgggacaaaaaggcagcaagggcgagacaggtctgcctggacttcca
ggaaaagtggatctaagccagttgggctcaaaaggagaaaaaggagagccaggaactgca
ggtattcctggtctaactgggcagaagggttaccaaggcatctcaggtgacccagggcct
cctggactagttgggcagccaggcacacctggacttccaggtcccaaaggcgatcgagga
ttacctggcccccctggaccaactggaccccctggacagaaaggttctggtggtgaaatg
ggtcttccaggttccccgggtgcgaaaggttcgcaaggcataggagggcgccctggacag
cctggttctcctgggtttcctgggctgaaaggagacaagggtgatcctggactttcggac
gtcggtatcccaggtccccctggccctaagggcgatgcaggattgcctggctactcaggg
agtcctggtatcaaagggtcttctggcaatcctggcttgcctggtttgcccggtaatcca
ggtgcaaaaggtgaacctggcctccccgggttcccagggacaccaggtatgccaggacca
aaaggtatcgatggacccccaggtaatccaggcgtaccaggaacacctggacctccaggt
gaccttggtcgccctggtcctccaggtccttcaggagaaaaaggacaacctgggcaagac
ggcattcctggaccggcaggacagaagggagaaccaggtcaaccagggtttggtcttccc
ggaaatccaggactcccaggactatcaggtcaaaagggtgacccaggtttaccggggccc
cttggtccaccaggcccccctggtctgaagggagagtccggggcccagggttttcctggc
ctccaaggcccaccaggctccccaggactcccagggccaccatcagaaggaccgaagggt
agccctggtccaccaggcataccaggaaggccaggtgccacaggtcctccaggtctacct
ggtccagaaggtgtccgtggaccccccggaactggaggagtcaaaggtgaaaaggggaac
ccaggtccatcaggtcaacctggactgcctggctcaaaaggagatcaaggaatacctgga
cgcccgggtgatccagggcgtcccggtctgaatggaatgaaaggtgatcccggtgtccca
ggagtcccaggatttccagggatgaagggcccccttggacccccaggaccagccggcttt
gcaggagaccccggacctccaggttccccaggtcctccagggatacctggcccagctgga
caaaccattgtggtaaaaggtgaccctggtccaccaggcccaccagggcaacctggaatg
aaaggcctacctggactaccaggccctccaggttcgccaggtccgattggtcttcctggt
gatgctggacaagatgggctgcctggatttgatggtccaggaggacgtaaaggggagcga
ggacttccaggtcaaccaggttttcggggttcgcaaggccctcctggtccggatggtttg
cagggaccccccggtcctcctggaatggcgtcagtcgctcatgggttcctgatcactcgc
cacagccaaacgacagatacaccattctgcccacaaggaaccactcggatatatgatggc
ttttctcttttgtatgtccaggggaacgaaagagcccacgggcaggacttgggcaccgct
ggcagctgcctccgccgtttcagcaccatgcctttcatgttctgcaacatcaacaatgtc
tgtaattttgcatctagaaatgactattcctattggctctccactcccgagccgatgccc
atgagcatggagccattaactggaaagagcatccaaccttttattagccggtgcacggtc
tgtgaagctccagccatggttatagcagtccacagccagaccatccaaatcccatcatgt
ccactaggctggagctccttatggatcggctattctttcatgatgcacaccagtgccggt
gcagaaggatctgggcaggcattggcttctcctggttcctgccttgaagaattccgctca
gctcctttcattgagtgccatggccgagggacctgcaactattatgccaactcctacagc
ttctggctggcgacggtggaggtggcagaaatgtttagtaaacctcagtctgagaccctc
aaggccggagacctgaggacgcgtattagtcgatgccaagtatgtatgaagaggacgtaa
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