Streptococcus suis SS12 (serotype 1/2): SSU12_0158
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Entry
SSU12_0158 CDS
T02025
Name
(GenBank) metallo-beta-lactamase superfamily hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
suo
Streptococcus suis SS12 (serotype 1/2)
Pathway
suo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
suo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSU12_0158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
suo03019
]
SSU12_0158
Messenger RNA biogenesis [BR:
suo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SSU12_0158
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
pre-PUA_NIP7
DUF4453
SocB
Motif
Other DBs
NCBI-ProteinID:
AER14355
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Position
complement(148902..150581)
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AA seq
559 aa
AA seq
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MSSVNLKPHEVGVFAIGGLGEIGKNTYGIEYKDEILIVDAGIKFPEDDLLGIDYVIPDYS
YIVENLDRVKGLVITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRDAT
LHEINHNTELTFKHLKVSFFRTTHSIPEPLGIVVDTPQGKIVCTGDFKFDFTPVGEPADL
HRMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKLIEGIHGRIIFASFASNIFRL
QQAADAAVKTGRKIAVFGRSMEKAIVNGIELGYIKVPKDTFIEPNEIKEYPASEIMILCT
GSQGEPMAALSRIAHGTHRQVQLQPGDTVIFSSSPIPGNTTGVNKLINILIEAGVDVIHG
KINNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMQKIHASLAVDTGVPKDNIFIMEN
GDVLALTKDSARLAGQFNAQDIYVDGNRIGEIGAAVLKDRRDLSEDGVVLAVATVDFNSK
MILAGPDILSRGFIYMRESGELIRESQRVLFNAIRIAMRNKDANIQTVNGAIVNALRPFL
YEKTEREPIIIPMILTPDR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagtcaatctaaaacctcatgaagttggcgttttcgccatcggtggtttggga
gaaatcgggaaaaacacctacggtatcgagtataaggatgaaattctcatcgtcgatgcc
ggtatcaagttcccagaagatgacctattgggtatcgactacgttatcccagactactcc
tacatcgttgaaaacctagaccgcgttaaaggtctggttattacccacgggcacgaagac
cacatcggaggcattcccttcttactcaagcaggccaatgtcccaatctatgctggacct
ttagccctcgcccttattcgaggcaaattggaagaacacggtctgctccgtgatgcgact
ttgcatgaaatcaatcataatacagagttgaccttcaagcacctcaaagtcagcttcttc
cgtaccacccactccattccagaacctctcggtatcgtcgttgatacacctcaagggaaa
atcgtctgtaccggtgacttcaagttcgacttcactcctgttggtgagccagcagacctt
caccgcatggccgccctgggtgaagaaggcgttctctgcctcctttccgactcgacaaat
gctgaagtcccaaccttcaccaactcggaaaaagtggtcggtcagtccattatgaagctg
attgaaggcattcacggacgcatcatctttgcttcctttgcctccaacatcttccgtctc
caacaggcggctgatgcagcggttaagaccggacgcaagatcgctgtctttggacgttcc
atggaaaaagccattgttaacggtatcgagctcggctacatcaaggtgcctaaggatacc
ttcatcgagccaaacgagatcaaagaataccctgccagcgagatcatgattctctgtaca
ggtagccagggtgagcctatggccgcactctctcgcatcgcccacggtacccaccgtcag
gtgcaactccagccaggcgacacggttatcttctcgtccagtcctattccgggaaatacc
acaggtgtcaacaagctcatcaatatcttgattgaagccggtgtcgatgttattcacggc
aagatcaacaacatccatacctctggacacggtggtcaacaagagcaaaaactcatgctc
cgcttgatcaaacccaaatacttcatgcctgtccatggtgaataccgcatgcaaaaaatc
catgccagcctagctgttgatacaggcgttcccaaagataatatcttcatcatggaaaac
ggagatgtccttgctctgacaaaagattctgcacgtctcgcaggtcaattcaacgcccaa
gacatctatgttgatggaaaccgcatcggtgaaatcggcgcagctgttctaaaagaccgc
cgcgatctttcagaagatggtgttgtccttgcagtagccactgtcgattttaattctaag
atgatattagcaggaccagacatcctcagccgtggctttatctatatgagagaatctggc
gagctcattcgcgaaagccaacgcgtccttttcaacgctatccgcatcgccatgcgcaac
aaagacgcaaatatccaaacagtcaacggcgccattgttaacgccctacgaccattccta
tacgaaaaaacagagcgtgaaccaatcattatcccaatgattctgacgcctgaccgataa
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