Streptococcus suis SS12 (serotype 1/2): SSU12_1518
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Entry
SSU12_1518 CDS
T02025
Name
(GenBank) superfamily II DNA/RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
suo
Streptococcus suis SS12 (serotype 1/2)
Pathway
suo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
suo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSU12_1518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
suo03019
]
SSU12_1518
03009 Ribosome biogenesis [BR:
suo03009
]
SSU12_1518
Enzymes [BR:
suo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SSU12_1518
Messenger RNA biogenesis [BR:
suo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SSU12_1518
Ribosome biogenesis [BR:
suo03009
]
Prokaryotic type
rRNA helicases
SSU12_1518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AER15697
LinkDB
All DBs
Position
complement(1510479..1512023)
Genome browser
AA seq
514 aa
AA seq
DB search
MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
NKIDTNNQAIQSLIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGA
HIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQTLLF
SATMPEPIKRIGVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLMDVDQPE
LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAIIEDLTKK
RMKGLKPATAEEAFEAKKKVALKKIEREMADETIRNNFDKFKKDAIQLAAEFTPEELALY
VLTLTVQDPESLPEVEIAREKPLPFKFAPGQAKGKGGRGGRDRDRGGRRGDRNDRNRRDD
KFKRDNRRQDNKKPHQRTSSEKKTGFVIRNKGER
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagatttacaattatcagaagatattttgcttgccgttgagaaggctggt
tttgaaacgccgtcaccaatccaggagcagaccattccgcttgctctggaaggaaaagat
gtgattggtcaagcgcagacggggacagggaaaactgcagcctttggtttgccaaccctc
aacaagattgatacaaacaatcaagcaattcaatccttgattatcgccccaacgcgtgag
ttggcggtgcagagtcaggaagagcttttcaaatttggtcgtgaaaaaggagtaaaagtt
cgctctgtttacggtggttctagcattgaaaaacaaatcaaggcccttcgttctggtgct
cacattgttgttggtacacctggtcgtctcttggacttgatcaaacgtaaagctctcaag
cttgacggtgttgaaacccttattcttgatgaggctgatgaaatgctcaacatgggcttc
ttggatgatattgaagccatcatcgaacgtgtgccagaaagccgtcaaactcttctgttt
tctgcaaccatgccagagccaatcaagcgtattggtgtcaaattcatgaaagagcctgag
cacgttaagattgcagcaaaggaattgactaatgtcaatgttgaccaatattatcttcgt
gtcaaagaacatgaaaaattcgacaccatgacacgcctcatggacgttgaccagccagaa
ttgtctatcgtcttcggtcgtactaagcgccgtgttgatgaattgactcgtggtttgaaa
ctgcgtggcttccgtgcagagggtatccacggagatttggatcagaataagcgtcttcgt
gttattcgtgactttaaaaatgaccagattgatgtcctcgttgcgacggacgttgcggcg
cgtggtttggatatttctggtgtaacgcatgtctataactacgatattccacaggatcca
gaaagctatgttcaccgtatcggtcgtacaggtcgtgcgggtcaatcaggtcagtctatt
acctttgtttcgccaaacgagatgggctacttggctattatcgaagatttgaccaagaaa
cgcatgaaagggctcaagccagcgacagctgaagaggcctttgaagccaagaaaaaagtt
gctttgaagaagattgagcgtgaaatggcggatgaaaccatccgtaacaattttgataag
ttcaagaaagatgctattcagttagcggctgaatttacccctgaagagttagcgctttat
gtattgaccttgactgttcaggatccagaaagtctgccagaggtagaaattgcgcgagaa
aaaccattaccattcaagtttgcacctggtcaagccaagggtaaaggtggacgtggaggt
cgcgaccgtgatcgcggaggacgccgtggtgatcgtaacgaccgcaaccgtcgcgatgac
aagttcaagcgcgataaccgccgtcaagacaacaaaaaaccacaccaacgcacatcaagt
gaaaagaaaacaggctttgtgattcgcaataaaggggagagataa
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