Superficieibacter sp. HKU1: P0H77_01810
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Entry
P0H77_01810 CDS
T08896
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
supe
Superficieibacter sp. HKU1
Pathway
supe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
supe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P0H77_01810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
supe03019
]
P0H77_01810
03400 DNA repair and recombination proteins [BR:
supe03400
]
P0H77_01810
Enzymes [BR:
supe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P0H77_01810
Messenger RNA biogenesis [BR:
supe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P0H77_01810
DNA repair and recombination proteins [BR:
supe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
P0H77_01810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
AAA_30
MarR_2
Motif
Other DBs
NCBI-ProteinID:
WES68775
LinkDB
All DBs
Position
382232..384325
Genome browser
AA seq
697 aa
AA seq
DB search
MHKRDAEQLLQHMLNNPLAQFRKGQWEAIDSVVNQRRKLLVVQRTGWGKSAVYFISCKIF
RQRGMGPTIIISPLLALMRNQIAAAARLGIKAQTLNSTNKDEWQAIVRQIRTNDIDCLLV
SPERFANDEFRDAVLAPIAASIALLVVDEAHCISDWGHDFRPDYRRILNTLRQLPPGTPV
LGTTATANNRVITDIRQQLGDIIIQRGTLARESLALDALRLPDRSSRLAWLASVIPVLPG
SGIVYTLTTRDADWVAAWLQQNHIEAYAYYSDATHPDFTDSNAWRIYLEEALQTNSIKVL
VATTALGMGYDKSDLSFVIHYQMPASIVGYYQQVGRAGRGIEHAVGILLAGAEDRAIHDF
FRESAFPSLAHVQEILNVLENNDGLTISEIEVQSNLRRGQIEKTLKLLSVEFPSPVLYDN
KRWRRTAVPFVLDQKRIDHLTRQRERELAEVQEYIDTQGCKMAFLRSSLDEENPTFCGKC
SACTQMSLFDPSRNDELIHHANLFLQRSEIPLHLNKQVAAGAFNTYPFRGNFPATLRAQE
GRILSRWGEAGLGQLVAQDKHAGYFSDALVSAAAGMILQRWQPSPEWVCCVPSLHHPDLV
SSFAKRLAEKLELPFVDVVAKVIDNQPQKLQQNRYHQCRNLDGVFNIITPLPSGNVLLVD
DVIDSGWTLTILTALLRQAGSGEIFPLALATTSVKNG
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgcacaagcgagacgctgaacaactgttgcaacatatgctcaataatcctttggctcaa
tttcgtaaagggcaatgggaagcgattgactccgttgttaaccaacgacgcaaattactg
gttgtacagcgaaccggctggggtaaaagcgccgtctattttattagctgcaaaattttt
cgacagcggggaatggggccaaccatcattatttcgcctctgctggcactgatgcgtaac
caaatcgctgccgccgcacgattagggattaaagcgcaaacgctgaactctactaacaaa
gacgagtggcaggcgatcgtgcggcaaattcgaactaacgacattgattgcctcctggtt
tctccagagcgttttgccaatgatgaatttcgcgatgccgtacttgcgccgattgccgcc
agtatcgccctgctggtcgttgacgaggcacactgtatttctgactggggtcatgatttc
cgccccgactaccgacgtattctgaatacgcttcggcagttacctccgggcacaccagta
ttggggacaacggcaacggcgaataaccgggttattacagatatccggcagcaactgggc
gacattattattcaacgcggcacgctggcgcgtgagagtctggcgctggatgcgctgcgc
ttgcccgatcgatcctcaaggctggcatggcttgccagtgtaatccctgtgcttcctggt
tcaggtattgtctataccctgacgacacgcgatgctgactgggttgctgcatggctacag
cagaaccacattgaggcttatgcttattatagcgatgccactcatcctgattttactgac
agtaacgcctggcgcatttatcttgaggaggcattgcagacaaacagcattaaagtcctc
gtcgctacaacggcattaggtatggggtacgataaatcggatctgagctttgttatccat
tatcaaatgcccgcatctattgttggctattatcagcaagtagggcgtgcaggccgtggt
attgaacatgctgtgggcatattgcttgccggggctgaagatcgtgctattcatgatttt
ttccgggaaagcgcatttccatccctggcgcatgtacaggagatcctgaacgtactggaa
aacaatgatgggctgacgataagtgaaattgaggtgcaaagtaatttgcgtcggggccaa
atcgaaaaaacactcaagcttctaagcgtggagtttccttctcctgtactttatgacaat
aagcgctggcgcaggacagcggttccttttgtgttagatcagaaacgcatcgatcatttg
acccggcaacgtgagcgggagttagccgaagttcaggagtatatagatactcaaggatgt
aaaatggcttttttgcgttcttcgctggatgaagaaaaccctactttctgtggtaaatgc
agcgcatgtacacagatgtcattgtttgatccctcccgtaacgatgagctgattcaccac
gcaaatcttttcctacagcgttcagaaatccctttgcatttgaataaacaggtggcagca
ggtgcgtttaacacttatccctttcgtggcaactttcccgctaccctacgagcgcaggaa
ggacgaatattgtcgcgttggggggaggcaggtttgggacaactcgttgcgcaggataaa
catgccgggtactttagtgatgcgcttgtgagcgccgctgccgggatgattctacagcgc
tggcagccgtctccagaatgggtttgctgcgttccatcgttacaccacccggatcttgtg
tcatcgtttgccaaaaggttggctgagaaactggagttaccttttgttgatgttgtggca
aaggtcatagacaatcaaccgcagaaactacagcaaaatcgttatcaccagtgccgaaat
ctggacggtgttttcaacatcattacacctcttccgtcaggcaatgtcttgctggttgat
gatgttatcgattcaggctggaccttaacaatacttacagccctgctccgtcaggcgggc
agcggtgagattttcccgctcgcgctggcgacaacctcggtgaaaaatggatga
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