Superficieibacter sp. HKU1: P0H77_04420
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Entry
P0H77_04420 CDS
T08896
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
supe
Superficieibacter sp. HKU1
Brite
KEGG Orthology (KO) [BR:
supe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
supe03021
]
P0H77_04420 (rapA)
Transcription machinery [BR:
supe03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
P0H77_04420 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
GT_PLOD
Cas3-like_C_2
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
WES69260
LinkDB
All DBs
Position
complement(904355..907261)
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AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAMDARTVTLLFPATGENRLYARSDSPVTRVMFNPGDT
VTSHEGWQLHIDDVKEENGLLAYTGTRLDTDEKDVLLREVFLDSKLVFSKPQDRLFAGQI
DRMDRFSLRYRARKYQSEQYRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG
LGKTIEAGMILHQQLLSGAAERVLVVVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH
DADNPFETEQLVICSLDFVRRNKQRLEHLCDAEWDLLVVDEAHHLVWSEDAPSREYSAIE
ELAGHVPGVLLLTATPEQLGMESHFARLRLLDPDRFHDFAQFVEEQNNYRPVADAVALLL
AGNKLSDSELNMLGELIGEQDIEPLLQTANSDRDGAQSARQELVSMLMDRHGTSRVLFRN
TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPEQIYQEFEGD
TGTWWNFDPRVEWLMGYLTSHRSQKVLVICAQATTALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFGEEDSGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLERTAQSVLVRWYHEGLDAFEHTCPTGRAIYDTVYNDLITYLAAPENT
DGFDDLIKSCRAQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFAM
NLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDIALSREDAQFITWE
HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPPTP
VRMLLDKNGTNLAAQVEFETFNRQLSAVNRHTGSKLVNAVQQEVHAILQQGEAQIEKAAR
QLIDAARSEADEKLSAELSRLEALKAVNPNIREDELEAIDSNRQQVMESLNQAGWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgacaccgaaagcgaactaggacttggt
actgttgtcgcgatggacgcgcgaactgtcacgctattatttccggctaccggagaaaac
cgcctgtatgcgcgcagcgattctcccgtgacccgcgttatgttcaatccgggcgatacc
gtaacaagtcatgaaggctggcagctgcacattgatgacgtaaaagaagaaaatggcctg
ctcgcctataccggtacgcgcctggatactgacgaaaaagacgttctgctgcgcgaagtg
tttctcgacagcaaactggtgttcagcaaaccgcaggatcgcctgttcgccgggcaaatc
gaccgtatggatcgcttttcactgcgttatcgggcgcgtaaataccagagcgaacagtac
cgcatgccgtacagcggcctgcgcggccagcgtaccagcctgatcccccatcagctcaac
attgcccatgacgttggccgccgccacgcaccgcgcgtgctgctggcagatgaagttggt
ttgggtaaaaccattgaagccgggatgatcctgcatcagcaactgctgtccggcgcggct
gagcgtgtcctggtggtggtgccggaaacgttgcagcatcagtggctggtagaaatgctg
cgtcgcttcaacctgcgctttgcgctgttcgacgatgagcgttatgccgaagcgcagcac
gatgccgacaatccgtttgaaaccgaacaactggtgatctgctcgctggacttcgtgcgt
cgtaataaacagcgccttgaacatctgtgtgatgccgagtgggatctgctggtagtcgat
gaagcgcaccatctggtgtggagtgaagacgcaccgagccgcgaatatagcgccattgaa
gaactggccggtcacgtaccgggcgtcctgctgctgaccgccacgccggaacagctcgga
atggaaagccactttgcgcgcctgcgcctgctggatccggatcgcttccacgacttcgcg
cagtttgtggaagaacaaaataactaccgtccggtcgccgacgcggtcgccctgctgctg
gcgggtaataagctcagcgacagcgaactgaatatgctcggtgaactcatcggcgaacag
gatattgaaccgctgctgcaaacggcgaacagcgaccgcgacggcgcacagtccgcccgt
caggaactggtctctatgctgatggaccgtcatggcaccagccgcgtgctgttccgcaac
acccgtaacggagtgaaaggctttccgaagcgcgaactgcataccatcaaactgccgttg
ccaacgcagtaccagaccgcaattaaagtctccggcatcatgggcgcgcgcaaaagcgcg
gaagaccgggcgcgggacatgctctacccggagcaaatttatcaggaatttgaaggtgat
actggtacctggtggaacttcgatccgcgcgtcgaatggctgatgggctatctgaccagc
caccgctcgcagaaagtgctggtgatttgtgcccaggccaccacggcgctgcagctggag
caggtgctgcgcgagcgcgaaggcatccgcgccgcggtcttccacgaaggtatgtcgatc
atcgaacgtgaccgcgccgccgcgtggtttggcgaagaagacagcggcgcgcaggtgctg
ctgtgctcggaaatcggctctgaagggcgtaacttccagtttgccagcaaccttgtgatg
tttgacctgccgtttaacccggacctgctggagcagcgtatcggtcgtctggaccgtatc
ggtcaggcgcacgatattcagatccacgttccttacctggagagaaccgcgcagtcggta
ctggttcgctggtatcacgaaggccttgatgcgtttgagcatacctgcccgaccggccgc
gcgatttatgacacggtgtataacgacctgattacgtatctggcagcaccggaaaacacc
gatggttttgacgatctgatcaaatcctgccgcgcgcagcacgacgcgctgaaagcccag
cttgaacaggggcgtgaccgtctgctggaaatccactccaacggcggggagaaagcgcag
gcgctggcagagagtattgaagaacaggatgatgataccagcctgatcgccttcgccatg
aacctgtttgacatcgtcggcattaaccaggatgaccgcggtgaaaacctgattgtcctg
acgccatccgatcacatgctggtgccggatttccccggtctgccggaagatggctgcacc
attacgtttgagcgtgatattgcgctgtcgcgtgaagatgcgcagtttattacctgggag
cacccgctgatccgtaatggtctggatctgatcttgtccggtgataccggcagcagcacc
atttcactgctgaaaaacaaggcgctgccggtgggcacgctgctgctggaactgatctac
gttgtcgaagcacaggccccgaaacagctccagcttaaccgcttcctgccgccgacgccg
gtgcgcatgctactggacaaaaacggcaccaatctggcggcgcaggtcgaatttgagacc
tttaaccgccagctcagcgcggttaaccgtcataccggtagcaagctggttaacgccgta
cagcaggaggttcacgccattctgcaacagggcgaagcgcagattgaaaaagccgcccgc
cagcttattgatgcagcgcgcagcgaggccgacgagaaattgtctgctgaactgtcgcgc
ctggaagcactgaaagcggtcaatccgaacatccgtgaggatgagctggaggccatcgac
agcaaccgccagcaggtgatggaaagcctgaaccaggcgggctggcgtctggacgcgctg
cgtctgattgtcgtcacgcatcagtaa
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